File: drawmol.js

package info (click to toggle)
rdkit 201809.1%2Bdfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 123,688 kB
  • sloc: cpp: 230,509; python: 70,501; java: 6,329; ansic: 5,427; sql: 1,899; yacc: 1,739; lex: 1,243; makefile: 445; xml: 229; fortran: 183; sh: 123; cs: 93
file content (170 lines) | stat: -rw-r--r-- 3,843 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
// $Id$
//
//  Copyright (C) 2009 Greg Landrum
//
//   @@ All Rights Reserved  @@
//
var LINE=1;
var WEDGE=2;
var ATOM=3;
var BOUNDS=4;
var RESOLUTION=5;
var END=-1;

var elemDict={
  6:"rgb(0,0,0)",
  7:"rgb(0,0,255)",
  8:"rgb(255,0,0)",
  9:"rgb(51,204,204)",
  15:"rgb(255,128,0)",
  16:"rgb(204,204,0)",
  17:"rgb(0,204,0)",
  35:"rgb(128,77,26)",
  0:"rgb(128,128,128)",
}

function DrawMol(canvasId,molData){
  if(molData.length<7){
    alert("data too short");
    return;
  }
  var canvas = document.getElementById(canvasId);
  var ctx = canvas.getContext('2d');
  ctx.restore();
  ctx.clearRect(0,0,canvas.width,canvas.height); // clear canvas

  if(molData[0]!=RESOLUTION || molData[1]<=0) {
    alert("no resolution data!")
    return;
  }
  var dotsPerAngstrom=molData[1];

  if(molData[2]!=BOUNDS ){
    alert("no bounds data!")
    return;
  }
  var minx=molData[3];
  var miny=molData[4];
  var maxx=molData[5];
  var maxy=molData[6];

  // we use the canvas to do our scaling and centering:
  var xscale = canvas.width/(maxx-minx);
  var yscale = canvas.height/(maxy-miny);
  var cx,cy;
  if(xscale>1){
    // the mol is too small in the x direction to fill the canvas
    var fraction = 1./xscale;
    var unused = canvas.width*(1-fraction);
    cx=unused/2-minx
    xscale=1;
  } else {
    cx=-minx;
  }
  if(yscale>1){
    // the mol is too small in the x direction to fill the canvas
    var fraction = 1./yscale;
    var unused = canvas.height*(1-fraction);
    cy=unused/2-miny
    yscale=1;
  } else {
    cy=-miny;
  }

  var scale;
  if(xscale<yscale){
    scale=xscale;
  } else {
    scale=yscale;
  }

  
  ctx.save();
  ctx.translate(cx,cy);
  ctx.scale(scale,scale);
  ctx.font = "2em 'arial'";

  var idx=7;
  while(idx<molData.length){
    var tag = molData[idx++];
    if(tag==LINE){
      var width=molData[idx++];
      ctx.lineWidth=width;
      var dashed=molData[idx++];
      var n1=molData[idx++];
      var c1 = elemDict[n1];
      if(!c1) c1=elemDict[6];
      var n2=molData[idx++];
      var c2 = elemDict[n2];
      if(!c2) c2=elemDict[6];
      var x1=molData[idx++];
      var y1=molData[idx++];
      var x2=molData[idx++];
      var y2=molData[idx++];
      if(c1==c2){
        ctx.beginPath();
        ctx.strokeStyle=c1;
        ctx.moveTo(x1,y1);
        ctx.lineTo(x2,y2);
        ctx.closePath();
        ctx.stroke()
      } else {
        var mpx=x1+(x2-x1)/2;
        var mpy=y1+(y2-y1)/2;

        ctx.beginPath();
        ctx.strokeStyle=c1;
        ctx.moveTo(x1,y1);
        ctx.lineTo(mpx,mpy);
        ctx.closePath();
        ctx.stroke()

        ctx.beginPath();
        ctx.strokeStyle=c2;
        ctx.moveTo(mpx,mpy);
        ctx.lineTo(x2,y2);
        ctx.closePath();
        ctx.stroke()

      }
    } else if(tag==WEDGE){
      
    } else if(tag==ATOM){
      var n1=molData[idx++];
      var x1=molData[idx++];
      var y1=molData[idx++];
      var nChars=molData[idx++];
      var symb="";
      for(j=0;j<nChars;++j){
          symb+=String.fromCharCode(molData[idx++]);
      }
      
      // not all canvas implementations have fillText
      if(ctx.fillText){
          if(symb!="C"){
              var c1 = elemDict[n1];
              if(!c1) c1=elemDict[6];
              ctx.textAlign='center';
              ctx.textBaseline='middle';
              measure = ctx.measureText(symb);
              ctx.beginPath();
              ctx.fillStyle="rgb(255,255,255)";
              ctx.arc(x1,y1,measure.width,0,6.3,0);
              ctx.closePath();
              ctx.fill();
              ctx.beginPath();
              ctx.fillStyle=c1;
              ctx.fillText(symb,x1,y1);
              ctx.closePath();
              ctx.fill();
          }
      }
    } else if(tag==END){
        break;
    } else {
      alert("bad tag!");
      return;
    }
  }

}