File: bench.cpp

package info (click to toggle)
rdkit 201809.1%2Bdfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 123,688 kB
  • sloc: cpp: 230,509; python: 70,501; java: 6,329; ansic: 5,427; sql: 1,899; yacc: 1,739; lex: 1,243; makefile: 445; xml: 229; fortran: 183; sh: 123; cs: 93
file content (52 lines) | stat: -rw-r--r-- 1,354 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
//
//  Copyright (C) 2001,2003 Greg Landrum and Rational Discovery LLC
//
//   @@ All Rights Reserved @@
//  This file is part of the RDKit.
//  The contents are covered by the terms of the BSD license
//  which is included in the file license.txt, found at the root
//  of the RDKit source tree.
//
#ifdef WIN32
#pragma warning(disable : 4786)  // warning: long & complicated stl warning
#pragma warning(disable : 4788)  // warning: long & complicated stl warning
#endif

// std bits
#include <iostream>

// RD bits
#include <GraphMol/RDKitBase.h>
#include <GraphMol/RDKitQueries.h>
#include <GraphMol/SmilesParse/SmilesParse.h>
#include <GraphMol/FileParsers/MolSupplier.h>
#include "SubstructMatch.h"
#include "SubstructUtils.h"
#include <cstdlib>

using namespace RDKit;

void test1(int stopAfter = 1000) {
  std::cout << " ----------------- Test 1" << std::endl;
  MatchVectType matchV;
  std::vector<MatchVectType> matches;
  std::string fName = getenv("RDBASE");
  fName += "/Data/NCI/first_5K.smi";
  int n;
  SmilesMolSupplier suppl(fName);
  RWMol *q = SmartsToMol("C1[C;X4][D3]1");
  TEST_ASSERT(q);

  for (int i = 0; i < stopAfter; i++) {
    ROMol *mol = suppl[i];
    if (mol) {
      n = SubstructMatch(mol, q, matches, true);
    }
  }
  std::cout << "Done\n" << std::endl;
}

int main(int argc, char *argv[]) {
  test1();
  return 0;
}