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/*
* $Id$
*
* Copyright (c) 2010, Novartis Institutes for BioMedical Research Inc.
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are
* met:
*
* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* * Redistributions in binary form must reproduce the above
* copyright notice, this list of conditions and the following
* disclaimer in the documentation and/or other materials provided
* with the distribution.
* * Neither the name of Novartis Institutes for BioMedical Research Inc.
* nor the names of its contributors may be used to endorse or promote
* products derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
* A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
* OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
* LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
%typemap(javaimports) RDKit::SDMolSupplier "
/** A molecule supplier deriving its molecules from an SD file */"
%javamethodmodifiers RDKit::SDMolSupplier::SDMolSupplier ( const std::string & fileName, bool sanitize = true, bool removeHs = true ) "
/**
<p>
<p>
@param
fileName - the name of the SD file
sanitize - if true sanitize the molecule before returning it
removeHs - if true remove Hs from the molecule before returning it (triggers sanitization)
*/
public";
%javamethodmodifiers RDKit::SDMolSupplier::getItemText ( unsigned int idx ) "
/**
<p>
<p>
@return
the text block for a particular item
<p>
@param
idx - which item to return
*/
public";
%javamethodmodifiers RDKit::SDMolSupplier::setStreamIndices ( const std::vector< std::streampos > & locs ) "
/**
<p>
Resets our internal state and sets the indices of molecules in the stream. The client should be *very* careful about calling this method, as it's trivial to end up with a completely useless supplier.
<p>
<p>
@param
locs - the vector of stream positions.
<p>
@notes
*/
public";
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