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/*
* $Id: BasicMoleculeTests.java 131 2011-01-20 22:01:29Z ebakke $
*
* Copyright (c) 2010, Novartis Institutes for BioMedical Research Inc.
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are
* met:
*
* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* * Redistributions in binary form must reproduce the above
* copyright notice, this list of conditions and the following
* disclaimer in the documentation and/or other materials provided
* with the distribution.
* * Neither the name of Novartis Institutes for BioMedical Research Inc.
* nor the names of its contributors may be used to endorse or promote
* products derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
* A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
* OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
* LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
package org.RDKit;
import static org.junit.Assert.*;
import org.junit.*;
public class MolQueryTests extends GraphMolTest {
private ROMol qmol_sma,qmol_smi;
@Before public void setUp() {
String smiles="C1CCC1*";
qmol_sma = RWMol.MolFromSmarts(smiles);
qmol_smi = RWMol.MolFromSmiles(smiles);
}
@Test public void testBasicsSma() {
ROMol m1,m2;
m1 = RWMol.MolFromSmiles("C1CCC1C");
m2 = RWMol.MolFromSmiles("C1CC(C)C1C");
assertTrue(m1.hasSubstructMatch(qmol_sma));
assertTrue(m2.hasSubstructMatch(qmol_sma));
ROMol aqmol = RDKFuncs.adjustQueryProperties(qmol_sma);
assertTrue(m1.hasSubstructMatch(aqmol));
assertFalse(m2.hasSubstructMatch(aqmol));
}
@Test public void testBasicsSmi() {
ROMol m1,m2;
m1 = RWMol.MolFromSmiles("C1CCC1C");
m2 = RWMol.MolFromSmiles("C1CC(C)C1C");
assertFalse(m1.hasSubstructMatch(qmol_smi));
assertFalse(m2.hasSubstructMatch(qmol_smi));
ROMol aqmol = RDKFuncs.adjustQueryProperties(qmol_smi);
assertTrue(m1.hasSubstructMatch(aqmol));
assertFalse(m2.hasSubstructMatch(aqmol));
}
public static void main(String args[]) {
org.junit.runner.JUnitCore.main("org.RDKit.BasicMoleculeTests");
}
}
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