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#!/bin/bash
#
# Copyright (c) 2011, Novartis Institutes for BioMedical Research Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# * Redistributions in binary form must reproduce the above
# copyright notice, this list of conditions and the following
# disclaimer in the documentation and/or other materials provided
# with the distribution.
# * Neither the name of Novartis Institutes for BioMedical Research Inc.
# nor the names of its contributors may be used to endorse or promote
# products derived from this software without specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
# OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
# DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
# THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# This script will download InChI software distribution version 1.04 and
# places it (temporarily) in a /tmp directory. This directory will
# automatically dissappear after you reboot the machine.
if ! which wget > /dev/null
then
echo "**Error: wget not found!"
exit 1
fi
DIR=`pwd`
TEMPDIR=`mktemp -d -t rdkit-avalontoolkit-XXX`
if [[ $DIR =~ External/AvalonTools$ ]]
then
mkdir -p src
echo "================================================================"
echo "Downloading AvalonTools software distribution version 1.04"
echo " http://sourceforge.net/projects/avalontoolkit/files/AvalonToolkit_1.2/AvalonToolkit_1.2.0.source.tar"
echo " ====>"
echo " $TEMPDIR"
echo "================================================================"
cd $TEMPDIR
wget http://sourceforge.net/projects/avalontoolkit/files/AvalonToolkit_1.2/AvalonToolkit_1.2.0.source.tar
echo "================================================================"
echo "Unarchiving"
echo "================================================================"
tar xvf AvalonToolkit_1.2.0.source.tar
echo "================================================================"
echo "Applying AvalonToolkit_1.2_patch.txt"
echo "================================================================"
patch -p0 < $DIR/AvalonToolkit_1.2_patch.txt
echo "================================================================"
echo "Copying files"
echo "================================================================"
cp -R SourceDistribution "$DIR"
echo "================================================================"
echo "Removing temporary files"
echo "================================================================"
cd $DIR
rm -rf $TEMPDIR
echo "================================================================"
echo "Done!"
echo "Make sure you (re)run cmake before running make"
echo "================================================================"
else
echo '**Error: you must invoke this script from within the directory'
echo ' $RDKIT_SOURCE_ROOT/External/AvalonTools'
exit 1
fi
|
