File: TorsionPreferences.h

package info (click to toggle)
rdkit 202009.4-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 129,624 kB
  • sloc: cpp: 288,030; python: 75,571; java: 6,999; ansic: 5,481; sql: 1,968; yacc: 1,842; lex: 1,254; makefile: 572; javascript: 461; xml: 229; fortran: 183; sh: 134; cs: 93
file content (41 lines) | stat: -rw-r--r-- 1,246 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
//
//  Copyright (C) 2017 Sereina Riniker
//
//   @@ All Rights Reserved @@
//  This file is part of the RDKit.
//  The contents are covered by the terms of the BSD license
//  which is included in the file license.txt, found at the root
//  of the RDKit source tree.
//
#include <RDGeneral/export.h>
#ifndef _RD_TORSIONPREFERENCES_H_
#define _RD_TORSIONPREFERENCES_H_
#include <vector>

namespace RDKit {
class ROMol;
}  // namespace RDKit

namespace ForceFields {
namespace CrystalFF {
struct CrystalFFDetails {
  std::vector<std::vector<int>> expTorsionAtoms;
  std::vector<std::pair<std::vector<int>, std::vector<double>>>
      expTorsionAngles;
  std::vector<std::vector<int>> improperAtoms;
  std::vector<std::pair<int, int>> bonds;
  std::vector<std::vector<int>> angles;
  std::vector<int> atomNums;
};

//! Get the experimental torsional angles in a molecule
RDKIT_FORCEFIELDHELPERS_EXPORT void getExperimentalTorsions(
    const RDKit::ROMol &mol, CrystalFFDetails &details,
    bool useExpTorsions = false, 
    bool useSmallRingTorsions = false, bool useMacrocycleTorsions = false,
    bool useBasicKnowledge = false,
    unsigned int version = 1, bool verbose = false);
}  // namespace CrystalFF
}  // namespace ForceFields

#endif