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//
// Copyright (C) 2005-2019 Greg Landrumm and Rational Discovery LLC
//
// @@ All Rights Reserved @@
// This file is part of the RDKit.
// The contents are covered by the terms of the BSD license
// which is included in the file license.txt, found at the root
// of the RDKit source tree.
//
#include <RDGeneral/export.h>
#ifndef RD_WRAP_MOLSUPPLIER_H
#define RD_WRAP_MOLSUPPLIER_H
//! Template functions for wrapping suppliers as python iterators.
#include <RDBoost/python.h>
#include <GraphMol/RDKitBase.h>
#include <RDGeneral/FileParseException.h>
namespace RDKit {
// Note that this returns a pointer to the supplier itself, so be careful
// that it doesn't get deleted by python!
template <typename T>
T *MolSupplIter(T *suppl) {
suppl->reset();
return suppl;
}
template <typename T>
ROMol *MolForwardSupplNext(T *suppl) {
ROMol *res = nullptr;
if (!suppl->atEnd()) {
try {
res = suppl->next();
} catch (const FileParseException&) {
throw;
} catch (...) {
res = nullptr;
}
} else {
PyErr_SetString(PyExc_StopIteration, "End of supplier hit");
throw boost::python::error_already_set();
}
if (suppl->atEnd() && suppl->getEOFHitOnRead()) {
PyErr_SetString(PyExc_StopIteration, "End of supplier hit");
throw boost::python::error_already_set();
}
return res;
}
template <typename T>
ROMol *MolSupplNext(T *suppl) {
ROMol *res = nullptr;
if (!suppl->atEnd()) {
try {
res = suppl->next();
} catch (const FileParseException&) {
throw;
} catch (...) {
res = nullptr;
}
} else {
PyErr_SetString(PyExc_StopIteration, "End of supplier hit");
throw boost::python::error_already_set();
}
return res;
} // namespace RDKit
template <typename T>
ROMol *MolSupplNextAcceptNullLastMolecule(T *suppl) {
ROMol *res = nullptr;
if (!suppl->atEnd()) {
try {
res = suppl->next();
} catch (const FileParseException&) {
throw;
} catch (...) {
res = nullptr;
}
} else {
PyErr_SetString(PyExc_StopIteration, "End of supplier hit");
throw boost::python::error_already_set();
}
return res;
}
template <typename T>
ROMol *MolSupplGetItem(T *suppl, int idx) {
ROMol *res = nullptr;
if (idx < 0) {
idx = suppl->length() + idx;
}
try {
res = (*suppl)[idx];
} catch (...) {
// it's kind of doofy that we can't just catch the FileParseException
// that is thrown when we run off the end of the supplier, but it seems
// that the cross-shared library exception handling thing is just too
// hard for me as of boost 1.35.0 (also 1.34.1) and g++ 4.1.x on linux
// this approach works as well:
if (suppl->atEnd()) {
PyErr_SetString(PyExc_IndexError, "invalid index");
throw boost::python::error_already_set();
} else {
res = nullptr;
}
}
return res;
}
} // namespace RDKit
#endif
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