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//
// Copyright (C) 2003-2019 Greg Landrum and Rational Discovery LLC
//
// @@ All Rights Reserved @@
// This file is part of the RDKit.
// The contents are covered by the terms of the BSD license
// which is included in the file license.txt, found at the root
// of the RDKit source tree.
//
#include <RDGeneral/export.h>
#ifndef RD_SUBSTRUCT_UTILS_H
#define RD_SUBSTRUCT_UTILS_H
#include "SubstructMatch.h"
namespace RDKit {
class ROMol;
class Atom;
class Bond;
RDKIT_SUBSTRUCTMATCH_EXPORT double toPrime(const MatchVectType& v);
RDKIT_SUBSTRUCTMATCH_EXPORT void removeDuplicates(std::vector<MatchVectType>& v,
unsigned int nAtoms);
RDKIT_SUBSTRUCTMATCH_EXPORT bool atomCompat(const Atom* a1, const Atom* a2,
const SubstructMatchParameters& ps);
RDKIT_SUBSTRUCTMATCH_EXPORT bool chiralAtomCompat(const Atom* a1,
const Atom* a2);
RDKIT_SUBSTRUCTMATCH_EXPORT bool bondCompat(const Bond* b1, const Bond* b2,
const SubstructMatchParameters& ps);
//! This postprocesses the passed substruct matches and returns
//! the match that has the largest number of non-hydrogen atoms
//! in correspondence of terminal dummy atoms
RDKIT_SUBSTRUCTMATCH_EXPORT const MatchVectType& getMostSubstitutedCoreMatch(
const ROMol& mol, const ROMol& core,
const std::vector<MatchVectType>& matches);
//! This returns a copy of the passed substruct matches sorted by decreasing
//! number of non-hydrogen atoms in correspondence of terminal dummy atoms
RDKIT_SUBSTRUCTMATCH_EXPORT std::vector<MatchVectType>
sortMatchesByDegreeOfCoreSubstitution(
const ROMol& mol, const ROMol& core,
const std::vector<MatchVectType>& matches);
} // namespace RDKit
#endif
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