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//
// Copyright (C) 2016 Novartis Institutes for BioMedical Research
//
// @@ All Rights Reserved @@
// This file is part of the RDKit.
// The contents are covered by the terms of the BSD license
// which is included in the file license.txt, found at the root
// of the RDKit source tree.
//
#include <RDGeneral/export.h>
#pragma once
#include "StructChecker.h"
#include "Utilites.h"
namespace RDKit {
namespace StructureCheck {
RDKIT_STRUCTCHECKER_EXPORT RDKit::Bond::BondType convertBondType(AABondType bt);
RDKIT_STRUCTCHECKER_EXPORT AABondType
convertBondType(RDKit::Bond::BondType rdbt);
RDKIT_STRUCTCHECKER_EXPORT unsigned getAtomicNumber(const std::string symbol);
RDKIT_STRUCTCHECKER_EXPORT bool AtomSymbolMatch(const std::string symbol,
const std::string pattern);
RDKIT_STRUCTCHECKER_EXPORT bool LigandMatches(const Atom &a, const Bond &b,
const Ligand &l,
bool use_charge = false);
RDKIT_STRUCTCHECKER_EXPORT bool isBondTypeMatch(const RDKit::Bond &b,
AABondType lbt);
RDKIT_STRUCTCHECKER_EXPORT bool RecMatch(const ROMol &mol, unsigned atomIdx,
const AugmentedAtom &aa,
const std::vector<Neighbourhood> &nbp,
bool verbose);
RDKIT_STRUCTCHECKER_EXPORT bool AAMatch(
const ROMol &mol, unsigned i, const AugmentedAtom &aa,
const std::vector<unsigned> &atom_ring_status,
const std::vector<Neighbourhood> &nbp, bool verbose);
RDKIT_STRUCTCHECKER_EXPORT bool TransformAugmentedAtoms(
RWMol &mol,
const std::vector<std::pair<AugmentedAtom, AugmentedAtom>> &aapair,
bool verbose);
RDKIT_STRUCTCHECKER_EXPORT bool CheckAtoms(
const ROMol &mol, const std::vector<AugmentedAtom> &good_atoms,
bool verbose);
} // namespace StructureCheck
} // namespace RDKit
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