File: DnaTest.mol

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  -INDIGO-01162517422D

  0  0  0  0  0  0  0  0  0  0  0 V3000
M  V30 BEGIN CTAB
M  V30 COUNTS 34 38 0 0 0
M  V30 BEGIN ATOM
M  V30 1 R 1.25 -1.25 0.0 0 CLASS=SUGAR SEQID=1 ATTCHORD=(4 2 Cx 5 Br)
M  V30 2 A 1.25 -2.75 0.0 0 CLASS=BASE SEQID=1 ATTCHORD=(2 1 Al)
M  V30 3 R 4.25 -1.25 0.0 0 CLASS=SUGAR SEQID=2 ATTCHORD=(6 4 Cx 5 Al 8 Br)
M  V30 4 G 4.25 -2.75 0.0 0 CLASS=BASE SEQID=2 ATTCHORD=(2 3 Al)
M  V30 5 P 2.75 -1.25 0.0 0 CLASS=PHOSPHATE SEQID=1 ATTCHORD=(4 1 Al 3 Br)
M  V30 6 R 7.25 -1.25 0.0 0 CLASS=SUGAR SEQID=3 ATTCHORD=(6 7 Cx 8 Al 11 Br)
M  V30 7 C 7.25 -2.75 0.0 0 CLASS=BASE SEQID=3 ATTCHORD=(2 6 Al)
M  V30 8 P 5.75 -1.25 0.0 0 CLASS=PHOSPHATE SEQID=2 ATTCHORD=(4 3 Al 6 Br)
M  V30 9 R 10.25 -1.25 0.0 0 CLASS=SUGAR SEQID=4 ATTCHORD=(6 10 Cx 11 Al 14 B-
M  V30 r)
M  V30 10 T 10.25 -2.75 0.0 0 CLASS=BASE SEQID=4 ATTCHORD=(2 9 Al)
M  V30 11 P 8.75 -1.25 0.0 0 CLASS=PHOSPHATE SEQID=3 ATTCHORD=(4 6 Al 9 Br)
M  V30 12 R 13.25 -1.25 0.0 0 CLASS=SUGAR SEQID=5 ATTCHORD=(6 13 Cx 14 Al 17 -
M  V30 Br)
M  V30 13 A 13.25 -2.75 0.0 0 CLASS=BASE SEQID=5 ATTCHORD=(2 12 Al)
M  V30 14 P 11.75 -1.25 0.0 0 CLASS=PHOSPHATE SEQID=4 ATTCHORD=(4 9 Al 12 Br)
M  V30 15 R 16.25 -1.25 0.0 0 CLASS=SUGAR SEQID=6 ATTCHORD=(4 16 Cx 17 Al)
M  V30 16 G 16.25 -2.75 0.0 0 CLASS=BASE SEQID=6 ATTCHORD=(2 15 Al)
M  V30 17 P 14.75 -1.25 0.0 0 CLASS=PHOSPHATE SEQID=5 ATTCHORD=(4 12 Al 15 Br-
M  V30 )
M  V30 18 U 1.25 -4.25 0.0 0 CLASS=BASE SEQID=1 ATTCHORD=(2 19 Al)
M  V30 19 R 1.25 -5.75 0.0 0 CLASS=SUGAR SEQID=1 ATTCHORD=(4 18 Cx 20 Br)
M  V30 20 P 2.75 -5.75 0.0 0 CLASS=PHOSPHATE SEQID=1 ATTCHORD=(4 19 Al 22 Br)
M  V30 21 C 4.25 -4.25 0.0 0 CLASS=BASE SEQID=2 ATTCHORD=(2 22 Al)
M  V30 22 R 4.25 -5.75 0.0 0 CLASS=SUGAR SEQID=2 ATTCHORD=(6 21 Cx 23 Br 20 A-
M  V30 l)
M  V30 23 P 5.75 -5.75 0.0 0 CLASS=PHOSPHATE SEQID=2 ATTCHORD=(4 22 Al 25 Br)
M  V30 24 G 7.25 -4.25 0.0 0 CLASS=BASE SEQID=3 ATTCHORD=(2 25 Al)
M  V30 25 R 7.25 -5.75 0.0 0 CLASS=SUGAR SEQID=3 ATTCHORD=(6 24 Cx 26 Br 23 A-
M  V30 l)
M  V30 26 P 8.75 -5.75 0.0 0 CLASS=PHOSPHATE SEQID=3 ATTCHORD=(4 25 Al 28 Br)
M  V30 27 A 10.25 -4.25 0.0 0 CLASS=BASE SEQID=4 ATTCHORD=(2 28 Al)
M  V30 28 R 10.25 -5.75 0.0 0 CLASS=SUGAR SEQID=4 ATTCHORD=(6 27 Cx 29 Br 26 -
M  V30 Al)
M  V30 29 P 11.75 -5.75 0.0 0 CLASS=PHOSPHATE SEQID=4 ATTCHORD=(4 28 Al 31 Br-
M  V30 )
M  V30 30 U 13.25 -4.25 0.0 0 CLASS=BASE SEQID=5 ATTCHORD=(2 31 Al)
M  V30 31 R 13.25 -5.75 0.0 0 CLASS=SUGAR SEQID=5 ATTCHORD=(6 30 Cx 32 Br 29 -
M  V30 Al)
M  V30 32 P 14.75 -5.75 0.0 0 CLASS=PHOSPHATE SEQID=5 ATTCHORD=(4 31 Al 33 Br-
M  V30 )
M  V30 33 R 16.25 -5.75 0.0 0 CLASS=SUGAR SEQID=6 ATTCHORD=(4 34 Cx 32 Al)
M  V30 34 C 16.25 -4.25 0.0 0 CLASS=BASE SEQID=6 ATTCHORD=(2 33 Al)
M  V30 END ATOM
M  V30 BEGIN BOND
M  V30 1 1 1 2
M  V30 2 1 3 4
M  V30 3 1 1 5
M  V30 4 1 5 3
M  V30 5 1 6 7
M  V30 6 1 3 8
M  V30 7 1 8 6
M  V30 8 1 9 10
M  V30 9 1 6 11
M  V30 10 1 11 9
M  V30 11 1 12 13
M  V30 12 1 9 14
M  V30 13 1 14 12
M  V30 14 1 15 16
M  V30 15 1 12 17
M  V30 16 1 17 15
M  V30 17 1 18 19
M  V30 18 1 19 20
M  V30 19 10 2 18
M  V30 20 1 21 22
M  V30 21 1 22 23
M  V30 22 1 20 22
M  V30 23 10 4 21
M  V30 24 1 24 25
M  V30 25 1 25 26
M  V30 26 1 23 25
M  V30 27 10 7 24
M  V30 28 1 27 28
M  V30 29 1 28 29
M  V30 30 1 26 28
M  V30 31 10 10 27
M  V30 32 1 30 31
M  V30 33 1 31 32
M  V30 34 1 29 31
M  V30 35 10 13 30
M  V30 36 1 33 34
M  V30 37 1 32 33
M  V30 38 10 16 34
M  V30 END BOND
M  V30 END CTAB
M  V30 BEGIN TEMPLATE
M  V30 TEMPLATE 1 SUGAR/Rib/R NATREPLACE=SUGAR/R
M  V30 BEGIN CTAB
M  V30 COUNTS 12 12 4 0 0
M  V30 BEGIN ATOM
M  V30 1 O -1.1017 -1.0663 0.0 0
M  V30 2 C -0.5897 0.3436 0.0 0 CFG=1
M  V30 3 C 0.0809 -1.9889 0.0 0 CFG=2
M  V30 4 C 0.9095 0.2924 0.0 0 CFG=2
M  V30 5 C 1.3239 -1.1493 0.0 0 CFG=1
M  V30 6 O 1.8285 1.4755 0.0 0
M  V30 7 O 2.4518 -1.5589 0.0 0
M  V30 8 C -1.431 1.5834 0.0 0
M  V30 9 O 0.0399 -3.1881 0.0 0
M  V30 10 O -2.9279 1.4755 0.0 0
M  V30 11 H -3.6017 2.4684 0.0 0
M  V30 12 H 3.0174 1.3125 0.0 0
M  V30 END ATOM
M  V30 BEGIN BOND
M  V30 1 1 1 2
M  V30 2 1 1 3
M  V30 3 1 2 4
M  V30 4 1 2 8 CFG=3
M  V30 5 1 3 5
M  V30 6 1 3 9 CFG=3
M  V30 7 1 4 5
M  V30 8 1 4 6 CFG=1
M  V30 9 1 5 7 CFG=1
M  V30 10 1 6 12
M  V30 11 1 8 10
M  V30 12 1 10 11
M  V30 END BOND
M  V30 BEGIN COLLECTION
M  V30 MDLV30/STEABS ATOMS=(4 2 3 4 5)
M  V30 END COLLECTION
M  V30 BEGIN SGROUP
M  V30 1 SUP 1 ATOMS=(1 11) XBONDS=(1 12) BRKXYZ=(9 0.336900 -0.496450 0.0000-
M  V30 00 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=H CLAS-
M  V30 S=LGRP
M  V30 2 SUP 2 ATOMS=(1 12) XBONDS=(1 10) BRKXYZ=(9 -0.594450 0.081500 0.0000-
M  V30 00 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=H CLAS-
M  V30 S=LGRP
M  V30 3 SUP 3 ATOMS=(1 9) XBONDS=(1 6) BRKXYZ=(9 0.020500 0.599600 0.000000 -
M  V30 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=OH CLASS=-
M  V30 LGRP
M  V30 4 SUP 4 ATOMS=(9 1 2 3 4 5 6 7 8 10) XBONDS=(3 6 10 12) BRKXYZ=(9 -0.0-
M  V30 20500 -0.599600 0.000000 0.594450 -0.081500 0.000000 0.000000 0.000000-
M  V30  0.000000) BRKXYZ=(9 -0.336900 0.496450 0.000000 0.000000 0.000000 0.0-
M  V30 00000 0.000000 0.000000 0.000000) LABEL=R CLASS=SUGAR SAP=(3 10 11 Al)-
M  V30  SAP=(3 6 12 Br) SAP=(3 3 9 Cx) NATREPLACE=SUGAR/R
M  V30 END SGROUP
M  V30 END CTAB
M  V30 TEMPLATE 2 BASE/Ade/A NATREPLACE=BASE/A
M  V30 BEGIN CTAB
M  V30 COUNTS 11 12 2 0 0
M  V30 BEGIN ATOM
M  V30 1 C 1.0354 0.2498 0.0 0
M  V30 2 C -0.0792 -0.754 0.0 0
M  V30 3 C -1.5057 -0.2906 0.0 0
M  V30 4 N -1.8177 1.1766 0.0 0
M  V30 5 C -0.7031 2.1804 0.0 0
M  V30 6 N 0.7235 1.717 0.0 0
M  V30 7 N -2.3871 -1.5034 0.0 0
M  V30 8 C -1.5053 -2.7168 0.0 0
M  V30 9 N -0.0787 -2.2532 0.0 0
M  V30 10 N 2.1768 -0.1209 0.0 0
M  V30 11 H -3.5871 -1.5034 0.0 0
M  V30 END ATOM
M  V30 BEGIN BOND
M  V30 1 1 1 10
M  V30 2 2 1 6
M  V30 3 1 1 2
M  V30 4 1 9 2
M  V30 5 2 2 3
M  V30 6 1 7 3
M  V30 7 1 3 4
M  V30 8 2 4 5
M  V30 9 1 5 6
M  V30 10 1 7 8
M  V30 11 1 7 11
M  V30 12 2 8 9
M  V30 END BOND
M  V30 BEGIN SGROUP
M  V30 1 SUP 1 ATOMS=(1 11) XBONDS=(1 11) BRKXYZ=(9 0.600000 0.000000 0.00000-
M  V30 0 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=H CLASS-
M  V30 =LGRP
M  V30 2 SUP 2 ATOMS=(10 1 2 3 4 5 6 7 8 9 10) XBONDS=(1 11) BRKXYZ=(9 -0.600-
M  V30 000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.0-
M  V30 00000) LABEL=A CLASS=BASE SAP=(3 7 11 Al) NATREPLACE=BASE/A
M  V30 END SGROUP
M  V30 END CTAB
M  V30 TEMPLATE 3 BASE/Gua/G NATREPLACE=BASE/G
M  V30 BEGIN CTAB
M  V30 COUNTS 12 13 2 0 0
M  V30 BEGIN ATOM
M  V30 1 C 1.0354 0.2498 0.0 0
M  V30 2 C -0.0792 -0.754 0.0 0
M  V30 3 C -1.5057 -0.2906 0.0 0
M  V30 4 N -1.8177 1.1766 0.0 0
M  V30 5 C -0.7031 2.1804 0.0 0
M  V30 6 N 0.7235 1.717 0.0 0
M  V30 7 N -2.3871 -1.5034 0.0 0
M  V30 8 C -1.5053 -2.7168 0.0 0
M  V30 9 N -0.0787 -2.2532 0.0 0
M  V30 10 O 2.1768 -0.1209 0.0 0
M  V30 11 N -0.9527 3.3542 0.0 0
M  V30 12 H -3.5871 -1.5034 0.0 0
M  V30 END ATOM
M  V30 BEGIN BOND
M  V30 1 2 1 10
M  V30 2 1 1 6
M  V30 3 1 1 2
M  V30 4 1 9 2
M  V30 5 2 2 3
M  V30 6 1 7 3
M  V30 7 1 3 4
M  V30 8 2 4 5
M  V30 9 1 5 6
M  V30 10 1 5 11
M  V30 11 1 7 8
M  V30 12 1 7 12
M  V30 13 2 8 9
M  V30 END BOND
M  V30 BEGIN SGROUP
M  V30 1 SUP 1 ATOMS=(1 12) XBONDS=(1 12) BRKXYZ=(9 0.600000 0.000000 0.00000-
M  V30 0 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=H CLASS-
M  V30 =LGRP
M  V30 2 SUP 2 ATOMS=(11 1 2 3 4 5 6 7 8 9 10 11) XBONDS=(1 12) BRKXYZ=(9 -0.-
M  V30 600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 -
M  V30 0.000000) LABEL=G CLASS=BASE SAP=(3 7 12 Al) NATREPLACE=BASE/G
M  V30 END SGROUP
M  V30 END CTAB
M  V30 TEMPLATE 4 PHOSPHATE/P/P NATREPLACE=PHOSPHATE/P
M  V30 BEGIN CTAB
M  V30 COUNTS 5 4 3 0 0
M  V30 BEGIN ATOM
M  V30 1 P -0.2399 0.0 0.0 0
M  V30 2 O -1.4399 0.0 0.0 0
M  V30 3 O 0.3598 -1.0394 0.0 0
M  V30 4 O 0.9601 0.0 0.0 0
M  V30 5 O 0.3598 1.0394 0.0 0
M  V30 END ATOM
M  V30 BEGIN BOND
M  V30 1 1 1 2
M  V30 2 2 1 3
M  V30 3 1 1 4
M  V30 4 1 1 5
M  V30 END BOND
M  V30 BEGIN SGROUP
M  V30 1 SUP 1 ATOMS=(1 2) XBONDS=(1 1) BRKXYZ=(9 0.600000 0.000000 0.000000 -
M  V30 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=OH CLASS=-
M  V30 LGRP
M  V30 2 SUP 2 ATOMS=(1 4) XBONDS=(1 3) BRKXYZ=(9 -0.600000 0.000000 0.000000-
M  V30  0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=OH CLASS-
M  V30 =LGRP
M  V30 3 SUP 3 ATOMS=(3 1 3 5) XBONDS=(2 1 3) BRKXYZ=(9 -0.600000 0.000000 0.-
M  V30 000000 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=P -
M  V30 CLASS=PHOSPHATE SAP=(3 1 2 Al) SAP=(3 1 4 Br) NATREPLACE=PHOSPHATE/P
M  V30 END SGROUP
M  V30 END CTAB
M  V30 TEMPLATE 5 BASE/Cyt/C NATREPLACE=BASE/C
M  V30 BEGIN CTAB
M  V30 COUNTS 9 9 2 0 0
M  V30 BEGIN ATOM
M  V30 1 C 1.8617 1.3499 0.0 0
M  V30 2 C 1.1117 2.6489 0.0 0
M  V30 3 C -0.3882 2.649 0.0 0
M  V30 4 N -1.1382 1.35 0.0 0
M  V30 5 C -0.3883 0.0509 0.0 0
M  V30 6 N 1.1117 0.0509 0.0 0
M  V30 7 N 3.0618 1.3499 0.0 0
M  V30 8 O -0.9884 -0.9883 0.0 0
M  V30 9 H -2.3383 1.35 0.0 0
M  V30 END ATOM
M  V30 BEGIN BOND
M  V30 1 1 1 2
M  V30 2 2 1 6
M  V30 3 1 1 7
M  V30 4 2 2 3
M  V30 5 1 3 4
M  V30 6 1 4 5
M  V30 7 1 4 9
M  V30 8 1 5 6
M  V30 9 2 5 8
M  V30 END BOND
M  V30 BEGIN SGROUP
M  V30 1 SUP 1 ATOMS=(1 9) XBONDS=(1 7) BRKXYZ=(9 0.600050 0.000000 0.000000 -
M  V30 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=H CLASS=L-
M  V30 GRP
M  V30 2 SUP 2 ATOMS=(8 1 2 3 4 5 6 7 8) XBONDS=(1 7) BRKXYZ=(9 -0.600050 0.0-
M  V30 00000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) -
M  V30 LABEL=C CLASS=BASE SAP=(3 4 9 Al) NATREPLACE=BASE/C
M  V30 END SGROUP
M  V30 END CTAB
M  V30 TEMPLATE 6 BASE/Thy/T NATREPLACE=BASE/T
M  V30 BEGIN CTAB
M  V30 COUNTS 10 10 2 0 0
M  V30 BEGIN ATOM
M  V30 1 C 1.8617 1.3499 0.0 0
M  V30 2 C 1.1117 0.0509 0.0 0
M  V30 3 C -0.3883 0.0509 0.0 0
M  V30 4 N -1.1382 1.35 0.0 0
M  V30 5 C -0.3882 2.649 0.0 0
M  V30 6 N 1.1117 2.6489 0.0 0
M  V30 7 O 3.0618 1.3499 0.0 0
M  V30 8 O -0.9882 3.6882 0.0 0
M  V30 9 H -2.3383 1.35 0.0 0
M  V30 10 C 1.7117 -0.9884 0.0 0
M  V30 END ATOM
M  V30 BEGIN BOND
M  V30 1 2 1 7
M  V30 2 1 1 6
M  V30 3 1 1 2
M  V30 4 2 2 3
M  V30 5 1 3 4
M  V30 6 1 4 5
M  V30 7 1 4 9
M  V30 8 2 5 8
M  V30 9 1 5 6
M  V30 10 1 2 10
M  V30 END BOND
M  V30 BEGIN SGROUP
M  V30 1 SUP 1 ATOMS=(1 9) XBONDS=(1 7) BRKXYZ=(9 0.600050 0.000000 0.000000 -
M  V30 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=H CLASS=L-
M  V30 GRP
M  V30 2 SUP 2 ATOMS=(9 1 2 3 4 5 6 7 8 10) XBONDS=(1 7) BRKXYZ=(9 -0.600050 -
M  V30 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.00000-
M  V30 0) LABEL=T CLASS=BASE SAP=(3 4 9 Al) NATREPLACE=BASE/T
M  V30 END SGROUP
M  V30 END CTAB
M  V30 TEMPLATE 7 BASE/Ura/U NATREPLACE=BASE/U
M  V30 BEGIN CTAB
M  V30 COUNTS 9 9 2 0 0
M  V30 BEGIN ATOM
M  V30 1 C 1.8617 1.3499 0.0 0
M  V30 2 C 1.1117 0.0509 0.0 0
M  V30 3 C -0.3883 0.0509 0.0 0
M  V30 4 N -1.1382 1.35 0.0 0
M  V30 5 C -0.3882 2.649 0.0 0
M  V30 6 N 1.1117 2.6489 0.0 0
M  V30 7 O 3.0618 1.3499 0.0 0
M  V30 8 O -0.9882 3.6882 0.0 0
M  V30 9 H -2.3383 1.35 0.0 0
M  V30 END ATOM
M  V30 BEGIN BOND
M  V30 1 2 1 7
M  V30 2 1 1 6
M  V30 3 1 1 2
M  V30 4 2 2 3
M  V30 5 1 3 4
M  V30 6 1 4 5
M  V30 7 1 4 9
M  V30 8 2 5 8
M  V30 9 1 5 6
M  V30 END BOND
M  V30 BEGIN SGROUP
M  V30 1 SUP 1 ATOMS=(1 9) XBONDS=(1 7) BRKXYZ=(9 0.600050 0.000000 0.000000 -
M  V30 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) LABEL=H CLASS=L-
M  V30 GRP
M  V30 2 SUP 2 ATOMS=(8 1 2 3 4 5 6 7 8) XBONDS=(1 7) BRKXYZ=(9 -0.600050 0.0-
M  V30 00000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000) -
M  V30 LABEL=U CLASS=BASE SAP=(3 4 9 Al) NATREPLACE=BASE/U
M  V30 END SGROUP
M  V30 END CTAB
M  V30 END TEMPLATE
M  END