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//
// Copyright (C) 2020 Gareth Jones, Glysade LLC
//
// @@ All Rights Reserved @@
// This file is part of the RDKit.
// The contents are covered by the terms of the BSD license
// which is included in the file license.txt, found at the root
// of the RDKit source tree.
//
#ifndef BINARYSTRINGCHROMOSOME_H_
#define BINARYSTRINGCHROMOSOME_H_
#include "StringChromosomeBase.h"
#include "BinaryStringChromosomePolicy.h"
#include "IntegerStringChromosomePolicy.h"
#include "../util/export.h"
namespace GapeGa {
template <typename T, typename ChromosomePolicy>
class StringChromosome : public StringChromosomeBase<T, ChromosomePolicy> {
private:
// we should never use the default implementation
StringChromosome() = delete;
};
template <>
class GA_EXPORT StringChromosome<bool, BinaryStringChromosomePolicy>
: public StringChromosomeBase<bool, BinaryStringChromosomePolicy> {
private:
StringChromosome(const StringChromosome &other) = delete;
StringChromosome &operator=(const StringChromosome &other) = delete;
public:
StringChromosome(int length_, GarethUtil::RandomUtil &rng_,
BinaryStringChromosomePolicy &chromosomePolicy_)
: StringChromosomeBase(length_, rng_, chromosomePolicy_) {
;
}
int decodeToInt(int start, int nBits) const;
int decodeByte(int byteNo) const { return decodeToInt(byteNo * 8, 8); }
};
using IntegerStringChromosome =
StringChromosome<int, IntegerStringChromosomePolicy>;
template <>
class GA_EXPORT StringChromosome<int, IntegerStringChromosomePolicy>
: public StringChromosomeBase<int, IntegerStringChromosomePolicy> {
private:
StringChromosome(const StringChromosome &other) = delete;
StringChromosome &operator=(const StringChromosome &other) = delete;
public:
StringChromosome(int length_, GarethUtil::RandomUtil &rng_,
IntegerStringChromosomePolicy &chromosomePolicy_)
: StringChromosomeBase(length_, rng_, chromosomePolicy_) {
;
}
void fullMixing(const IntegerStringChromosome &parent2,
IntegerStringChromosome &child1,
IntegerStringChromosome &child2) const;
void fullMixingAndCrossover(const IntegerStringChromosome &parent2,
IntegerStringChromosome &child1,
IntegerStringChromosome &child2) const;
};
using BinaryStringChromosome =
StringChromosome<bool, BinaryStringChromosomePolicy>;
} // namespace GapeGa
#endif /* BINARYSTRINGCHROMOSOME_H_ */
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