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#
# Makefile for testing readseq
# to use, command me:
# % make test
#
test:
@echo ""
@echo "Test for general read/write of all chars:"
/usr/bin/readseq -p alphabet.std -otest.alpha
-diff test.alpha alphabet.std
@echo ""
@echo "Test for valid format conversions:"
/usr/bin/readseq -v -p -f=ig nucleic.std -otest.ig
/usr/bin/readseq -v -p -f=gb test.ig -otest.gb
/usr/bin/readseq -v -p -f=nbrf test.gb -otest.nbrf
/usr/bin/readseq -v -p -f=embl test.nbrf -otest.embl
/usr/bin/readseq -v -p -f=gcg test.embl -otest.gcg
/usr/bin/readseq -v -p -f=strider test.gcg -otest.strider
/usr/bin/readseq -v -p -f=fitch test.strider -otest.fitch
/usr/bin/readseq -v -p -f=fasta test.fitch -otest.fasta
/usr/bin/readseq -v -p -f=pir test.fasta -otest.pir
/usr/bin/readseq -v -p -f=ig test.pir -otest.ig-b
-diff test.ig test.ig-b
@echo ""
@echo "Test for multiple-sequence format conversions:"
/usr/bin/readseq -p -f=ig multi.std -otest.m-ig
/usr/bin/readseq -p -f=gb test.m-ig -otest.m-gb
/usr/bin/readseq -p -f=nbrf test.m-gb -otest.m-nbrf
/usr/bin/readseq -p -f=embl test.m-nbrf -otest.m-embl
/usr/bin/readseq -p -f=fasta test.m-embl -otest.m-fasta
/usr/bin/readseq -p -f=pir test.m-fasta -otest.m-pir
/usr/bin/readseq -p -f=msf test.m-pir -otest.m-msf
/usr/bin/readseq -p -f=paup test.m-msf -otest.m-paup
/usr/bin/readseq -p -f=ig test.m-paup -otest.m-ig-b
-diff test.m-ig test.m-ig-b
#
# if using NCBI, uncomment these lines
@echo ""
@echo "Test of NCBI ASN.1 conversions:"
/usr/bin/readseq -p -f=asn test.m-ig -otest.m-asn
/usr/bin/readseq -p -f=ig test.m-asn -otest.m-ig-c
-diff test.m-ig test.m-ig-c
#
@echo ""
@echo "Expect differences in the header lines due to"
@echo "different format headers. If any sequence lines"
@echo "differ, or if the checksums differ, there is a problem."
@echo "----------------------"
@echo ""
@echo "To clean up test files, command me:"
@echo " make clean"
clean:
rm -f test.*
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