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#
# dgg added new readseq formats, 29 dec 92
#
item:Export Foreign Format
itemmethod:readseq in1 -pipe -all -form=$FORMAT > $OUTPUTFILE
itemhelp:readseq.help
arg:FORMAT
argtype:choice_menu
argchoice:GenBank:genbank
argchoice:IG/Stanford:ig
argchoice:NBRF:nbrf
argchoice:EMBL:embl
argchoice:GCG:gcg
argchoice:DNA Strider:strider
argchoice:Fitch:fitch
argchoice:Pearson/Fasta:pearson
argchoice:Zuker:zuker
argchoice:Olsen:olsen
argchoice:Phylip:phylip
#argchoice:Phylip v3.2:phylip3.2
argchoice:Plain text:raw
argchoice:ASN.1:asn
argchoice:PIR:pir
argchoice:MSF:msf
argchoice:PAUP:paup
argchoice:Pretty:pretty -nametop -nameleft=3 -numright -nameright -numtop
arg:OUTPUTFILE
argtype:text
arglabel:Save as?
in:in1
informat:genbank
#
#dgg addition for new readseq, 24 dec 92
#
item:Pretty Print
itemmethod:readseq in1 -p -a -f=pretty $NAMELEFT $NAMERIGHT $NUMTOP $NUMBOT $NUMLEFT $NUMRIGHT -col=$COLS -width=$WIDTH $MATCH $GAPC > in1.pretty; (textedit in1.pretty; /bin/rm -f in1 in1.pretty)&
itemhelp:readseq.help
#nametop is bad !?
in:in1
informat:genbank
arg:NAMETOP
argtype:chooser
arglabel:Names at top ?
argchoice:No:
argchoice:Yes:-nametop
arg:NAMELEFT
argtype:chooser
arglabel:Names at left ?
argchoice:No:
argchoice:Yes:-nameleft
arg:NAMERIGHT
argtype:chooser
arglabel:Names at right?
argchoice:Yes:-nameright
argchoice:No:
arg:NUMTOP
argtype:chooser
arglabel:Numbers at top ?
argchoice:Yes:-numtop
argchoice:No:
arg:NUMBOT
argtype:chooser
arglabel:Numbers at tail ?
argchoice:No:
argchoice:Yes:-numbot
arg:NUMLEFT
argtype:chooser
arglabel:Numbers at left ?
argchoice:Yes:-numleft
argchoice:No:
arg:NUMRIGHT
argtype:chooser
arglabel:Numbers at right?
argchoice:Yes:-numright
argchoice:No:
arg:MATCH
argtype:chooser
arglabel:Use match '.' for 2..n species?
argchoice:No:
argchoice:Yes:-match
arg:GAPC
argtype:chooser
arglabel:Count gap symbols?
argchoice:No:
argchoice:Yes:-gap
arg:WIDTH
argtype:slider
arglabel:Sequence width?
argmin:10
argmax:200
argvalue:50
arg:COLS
argtype:slider
arglabel:Column spacers?
argmin:0
argmax:50
argvalue:10
### pretty print insert end
#
|
