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Author: Liubov Chuprikova <chuprikovalv@gmail.com>
Last-Update: Sat, 23 June 2018 11:27:32 +0200
Description: Fix a checksum in alphabet.std (see how the file was generated in
Stdfiles). Turn off a testing of NCBI ASN.1 conversions and indicate that it
works improperly.
--- a/alphabet.std
+++ b/alphabet.std
@@ -1,3 +1,3 @@
->alphabet['!'..'~'], 83 bases, 9429 checksum.
+>alphabet['!'..'~'], 83 bases, E14ECBE2 checksum.
!"#$%&'()*+-./:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]
^_`abcdefghijklmnopqrstuvwxyz{|}~
--- a/Makefile
+++ b/Makefile
@@ -82,13 +82,19 @@
./readseq -p -f=paup test.m-msf -otest.m-paup
./readseq -p -f=ig test.m-paup -otest.m-ig-b
-diff test.m-ig test.m-ig-b
+
+# !!!!!
+# Conversion to NCBI ASN.1 works improperly!!! It is very likely due to some
+# changes in ASN.1 format specifications that this program does not take into
+# account. At least, it allows inappropriate encoding to be stored as ASN.1
+# data.
#
# if using NCBI, uncomment these lines
- @echo ""
- @echo "Test of NCBI ASN.1 conversions:"
- ./readseq -p -f=asn test.m-ig -otest.m-asn
- ./readseq -p -f=ig test.m-asn -otest.m-ig-c
- -diff test.m-ig test.m-ig-c
+# @echo ""
+# @echo "Test of NCBI ASN.1 conversions:"
+# ./readseq -p -f=asn test.m-ig -otest.m-asn
+# ./readseq -p -f=ig test.m-asn -otest.m-ig-c
+# -diff test.m-ig test.m-ig-c
#
@echo ""
@echo "Expect differences in the header lines due to"
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