File: run-unit-test

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readucks 0.0.3-8
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#!/bin/bash
set -e

pkg=readucks

cd Test
mkdir -p demuxed
readucks -i FAL30025_9ca83a95a0f3e84fbdef0227415f8d7698c49aac_0.fastq -o demuxed/ -b --native_barcodes --verbosity 1
cd demuxed

for f in *.fastq
do
	if [ "$f" = "FAL30025_9ca83a95a0f3e84fbdef0227415f8d7698c49aac_0.fastq" ]
	then
		continue
	fi
	echo "Comparing $f"
	diff -u $f ../../debian/tests/expected/$f
	echo "Done."
done
cd ..
rm -rf demuxed