File: reapr-gapresize.1.adoc

package info (click to toggle)
reapr 1.0.18%2Bdfsg-5
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 1,088 kB
  • sloc: cpp: 4,816; perl: 1,467; sh: 160; makefile: 122
file content (18 lines) | stat: -rw-r--r-- 318 bytes parent folder | download | duplicates (4) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
 
# reapr-gapresize(1)

## NAME

reapr-gapresize - calculates gap sizes based on read mapping

## SYNOPSIS

*reapr gapresize* [options] <assembly.fasta> <in.bam> <avg-fragment-length> <max-fragment-length> <outfileprefix>

## OPTIONS

*-g* <int>::
  Only consider gaps of at least this length [1]

## SEE ALSO

reapr(1)