File: reapr-seqrename.1.adoc

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# reapr-seqrename(1)

## NAME

reapr-seqrename - renames all sequences in a BAM file

## SYNOPSIS

*reapr seqrename* <renamefile> <in.bam> <out.bam>

## DESCRIPTION

<renamefile> is the file .info made by *facheck*, which contains the mapping of old name to new name.

## SEE ALSO

reapr(1)