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reapr 1.0.18+dfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 1,092 kB
  • ctags: 733
  • sloc: cpp: 4,816; perl: 1,467; sh: 160; makefile: 116

Folder: src

d .. (parent)
- - rw-r--r-- 175 .gitignore
- - rw-r--r-- 4,518 Makefile
- - rw-r--r-- 5,976 bam2fcdEstimate.cpp
- - rw-r--r-- 6,027 bam2fragCov.cpp
- - rw-r--r-- 5,358 bam2insert.cpp
- - rw-r--r-- 6,697 bam2perfect.cpp
- l rwxrwxrwx 23 bamtools → ../third_party/bamtools
- - rw-r--r-- 650 coveragePlot.cpp
- - rw-r--r-- 755 coveragePlot.h
- - rw-r--r-- 1,329 errorWindow.cpp
- - rw-r--r-- 1,175 errorWindow.h
- - rw-r--r-- 947 fa2gaps.cpp
- - rw-r--r-- 5,749 fa2gc.cpp
- - rw-r--r-- 2,781 fasta.cpp
- - rw-r--r-- 1,371 fasta.h
- l rwxrwxrwx 38 findknownsnps → ../third_party/snpomatic/findknownsnps
- - rw-r--r-- 10,022 histogram.cpp
- - rw-r--r-- 3,129 histogram.h
- - rw-r--r-- 3,527 make_plots.cpp
- - rw-r--r-- 4,181 n50.cpp
- - rwxr-xr-x 3,509 reapr.pl
- l rwxrwxrwx 32 samtools → ../third_party/samtools/samtools
- - rwxr-xr-x 2,273 scaff2contig.cpp
- l rwxrwxrwx 27 smalt → ../third_party/smalt_x86_64
- l rwxrwxrwx 20 tabix → ../third_party/tabix
- - rw-r--r-- 15,889 task_break.cpp
- - rwxr-xr-x 2,461 task_facheck.pl
- - rw-r--r-- 11,588 task_fcdrate.cpp
- - rw-r--r-- 7,622 task_gapresize.cpp
- - rwxr-xr-x 6,011 task_perfectfrombam.pl
- - rwxr-xr-x 4,475 task_perfectmap.pl
- - rwxr-xr-x 4,064 task_pipeline.pl
- - rwxr-xr-x 3,047 task_plots.pl
- - rwxr-xr-x 14,805 task_preprocess.pl
- - rw-r--r-- 41,417 task_score.cpp
- - rwxr-xr-x 1,377 task_seqrename.pl
- - rwxr-xr-x 5,524 task_smaltmap.pl
- - rw-r--r-- 33,147 task_stats.cpp
- - rwxr-xr-x 8,928 task_summary.pl
- - rw-r--r-- 11,461 trianglePlot.cpp
- - rw-r--r-- 3,157 trianglePlot.h
- - rw-r--r-- 2,379 utils.cpp
- - rw-r--r-- 1,555 utils.h