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#ifndef COVERAGEPLOT_H
#define COVERAGEPLOT_H
#include <deque>
using namespace std;
class CoveragePlot
{
public:
// construct a coverage plot, with max read length n and position pos
CoveragePlot();
CoveragePlot(unsigned long n, unsigned long pos);
// move the coord of the plot 1 base to the right
void increment();
// returns the coverage at the current base
unsigned long depth();
// return the zero element depth
unsigned long front();
// add a read that ends at position n
void add(unsigned long n);
// returns the position of the plot
unsigned long position();
private:
unsigned long coord_;
unsigned long depth_;
deque<unsigned long> depthDiff_;
};
#endif // COVERAGEPLOT
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