File: 21U.cif

package info (click to toggle)
refmac-dictionary 5.41-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 217,852 kB
file content (382 lines) | stat: -rw-r--r-- 17,375 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
21U      21U 'D-leucyl-N-(3-chlorobenzyl)-L-prolin' non-polymer        50  24 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_21U
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 21U           CL21   CL   CL        0.000      0.000    0.000    0.000
 21U           C29    C    CR6       0.000     -1.366    0.994    0.403
 21U           C30    C    CR16      0.000     -2.582    0.786   -0.226
 21U           H30    H    H         0.000     -2.681    0.005   -0.969
 21U           C28    C    CR16      0.000     -1.240    1.992    1.351
 21U           H28    H    H         0.000     -0.288    2.156    1.843
 21U           C27    C    CR16      0.000     -2.328    2.782    1.672
 21U           H27    H    H         0.000     -2.231    3.562    2.418
 21U           C26    C    CR16      0.000     -3.541    2.578    1.041
 21U           H26    H    H         0.000     -4.391    3.202    1.286
 21U           C25    C    CR6       0.000     -3.668    1.576    0.096
 21U           C24    C    CH2       0.000     -4.993    1.352   -0.589
 21U           H24    H    H         0.000     -4.821    0.966   -1.596
 21U           H24A   H    H         0.000     -5.536    2.297   -0.650
 21U           N23    N    NH1       0.000     -5.780    0.383    0.179
 21U           HN23   H    H         0.000     -5.403   -0.016    1.027
 21U           C7     C    C         0.000     -7.008    0.026   -0.246
 21U           O22    O    O         0.000     -7.461    0.505   -1.264
 21U           C1     C    CH1       0.000     -7.818   -0.970    0.544
 21U           H1     H    H         0.000     -7.979   -0.595    1.564
 21U           C2     C    CH2       0.000     -7.085   -2.327    0.591
 21U           H2     H    H         0.000     -6.562   -2.488    1.537
 21U           H2A    H    H         0.000     -6.384   -2.454   -0.236
 21U           C3     C    CH2       0.000     -8.240   -3.354    0.455
 21U           H3     H    H         0.000     -8.751   -3.554    1.399
 21U           H3A    H    H         0.000     -7.926   -4.298    0.006
 21U           C4     C    CH2       0.000     -9.201   -2.616   -0.508
 21U           H4A    H    H         0.000    -10.231   -2.962   -0.395
 21U           H4     H    H         0.000     -8.894   -2.727   -1.550
 21U           N1     N    N         0.000     -9.112   -1.197   -0.117
 21U           C14    C    C         0.000    -10.059   -0.261   -0.333
 21U           O32    O    O         0.000     -9.877    0.880    0.034
 21U           C15    C    CH1       0.000    -11.342   -0.635   -1.030
 21U           H15    H    H         0.000    -11.123   -1.330   -1.852
 21U           N2     N    NH2       0.000    -11.976    0.576   -1.568
 21U           HN2A   H    H         0.000    -12.146    0.664   -2.563
 21U           HN2    H    H         0.000    -12.247    1.330   -0.948
 21U           C16    C    CH2       0.000    -12.288   -1.306   -0.033
 21U           H16    H    H         0.000    -12.574   -0.586    0.737
 21U           H16A   H    H         0.000    -11.781   -2.153    0.434
 21U           C12    C    CH1       0.000    -13.538   -1.796   -0.766
 21U           H12    H    H         0.000    -13.996   -0.958   -1.309
 21U           C18    C    CH3       0.000    -14.537   -2.355    0.248
 21U           H18B   H    H         0.000    -15.403   -2.695   -0.259
 21U           H18A   H    H         0.000    -14.096   -3.163    0.772
 21U           H18    H    H         0.000    -14.806   -1.595    0.935
 21U           C13    C    CH3       0.000    -13.149   -2.895   -1.758
 21U           H13B   H    H         0.000    -14.014   -3.235   -2.266
 21U           H13A   H    H         0.000    -12.457   -2.509   -2.461
 21U           H13    H    H         0.000    -12.707   -3.704   -1.236
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 21U      CL21   n/a    C29    START
 21U      C29    CL21   C28    .
 21U      C30    C29    H30    .
 21U      H30    C30    .      .
 21U      C28    C29    C27    .
 21U      H28    C28    .      .
 21U      C27    C28    C26    .
 21U      H27    C27    .      .
 21U      C26    C27    C25    .
 21U      H26    C26    .      .
 21U      C25    C26    C24    .
 21U      C24    C25    N23    .
 21U      H24    C24    .      .
 21U      H24A   C24    .      .
 21U      N23    C24    C7     .
 21U      HN23   N23    .      .
 21U      C7     N23    C1     .
 21U      O22    C7     .      .
 21U      C1     C7     N1     .
 21U      H1     C1     .      .
 21U      C2     C1     C3     .
 21U      H2     C2     .      .
 21U      H2A    C2     .      .
 21U      C3     C2     C4     .
 21U      H3     C3     .      .
 21U      H3A    C3     .      .
 21U      C4     C3     H4     .
 21U      H4A    C4     .      .
 21U      H4     C4     .      .
 21U      N1     C1     C14    .
 21U      C14    N1     C15    .
 21U      O32    C14    .      .
 21U      C15    C14    C16    .
 21U      H15    C15    .      .
 21U      N2     C15    HN2    .
 21U      HN2A   N2     .      .
 21U      HN2    N2     .      .
 21U      C16    C15    C12    .
 21U      H16    C16    .      .
 21U      H16A   C16    .      .
 21U      C12    C16    C13    .
 21U      H12    C12    .      .
 21U      C18    C12    H18    .
 21U      H18B   C18    .      .
 21U      H18A   C18    .      .
 21U      H18    C18    .      .
 21U      C13    C12    H13    .
 21U      H13B   C13    .      .
 21U      H13A   C13    .      .
 21U      H13    C13    .      END
 21U      N1     C4     .    ADD
 21U      C25    C30    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 21U      C16    C15       single      1.524    0.020
 21U      C12    C16       single      1.524    0.020
 21U      N2     C15       single      1.450    0.020
 21U      C15    C14       single      1.500    0.020
 21U      O32    C14       double      1.220    0.020
 21U      C14    N1        single      1.330    0.020
 21U      N1     C4        single      1.455    0.020
 21U      N1     C1        single      1.455    0.020
 21U      C4     C3        single      1.524    0.020
 21U      C3     C2        single      1.524    0.020
 21U      C2     C1        single      1.524    0.020
 21U      C1     C7        single      1.500    0.020
 21U      C7     N23       single      1.330    0.020
 21U      O22    C7        double      1.220    0.020
 21U      N23    C24       single      1.450    0.020
 21U      C24    C25       single      1.511    0.020
 21U      C25    C30       double      1.390    0.020
 21U      C25    C26       single      1.390    0.020
 21U      C30    C29       single      1.390    0.020
 21U      C28    C29       double      1.390    0.020
 21U      C29    CL21      single      1.795    0.020
 21U      C27    C28       single      1.390    0.020
 21U      C26    C27       double      1.390    0.020
 21U      C13    C12       single      1.524    0.020
 21U      C18    C12       single      1.524    0.020
 21U      H16    C16       single      1.092    0.020
 21U      H16A   C16       single      1.092    0.020
 21U      HN2    N2        single      1.010    0.020
 21U      HN2A   N2        single      1.010    0.020
 21U      H15    C15       single      1.099    0.020
 21U      H4     C4        single      1.092    0.020
 21U      H4A    C4        single      1.092    0.020
 21U      H3     C3        single      1.092    0.020
 21U      H3A    C3        single      1.092    0.020
 21U      H2     C2        single      1.092    0.020
 21U      H2A    C2        single      1.092    0.020
 21U      H1     C1        single      1.099    0.020
 21U      HN23   N23       single      1.010    0.020
 21U      H24    C24       single      1.092    0.020
 21U      H24A   C24       single      1.092    0.020
 21U      H30    C30       single      1.083    0.020
 21U      H28    C28       single      1.083    0.020
 21U      H27    C27       single      1.083    0.020
 21U      H26    C26       single      1.083    0.020
 21U      H12    C12       single      1.099    0.020
 21U      H13    C13       single      1.059    0.020
 21U      H13A   C13       single      1.059    0.020
 21U      H13B   C13       single      1.059    0.020
 21U      H18    C18       single      1.059    0.020
 21U      H18A   C18       single      1.059    0.020
 21U      H18B   C18       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 21U      CL21   C29    C30     120.000    3.000
 21U      CL21   C29    C28     120.000    3.000
 21U      C30    C29    C28     120.000    3.000
 21U      C29    C30    H30     120.000    3.000
 21U      C29    C30    C25     120.000    3.000
 21U      H30    C30    C25     120.000    3.000
 21U      C29    C28    H28     120.000    3.000
 21U      C29    C28    C27     120.000    3.000
 21U      H28    C28    C27     120.000    3.000
 21U      C28    C27    H27     120.000    3.000
 21U      C28    C27    C26     120.000    3.000
 21U      H27    C27    C26     120.000    3.000
 21U      C27    C26    H26     120.000    3.000
 21U      C27    C26    C25     120.000    3.000
 21U      H26    C26    C25     120.000    3.000
 21U      C26    C25    C24     120.000    3.000
 21U      C26    C25    C30     120.000    3.000
 21U      C24    C25    C30     120.000    3.000
 21U      C25    C24    H24     109.470    3.000
 21U      C25    C24    H24A    109.470    3.000
 21U      C25    C24    N23     109.500    3.000
 21U      H24    C24    H24A    107.900    3.000
 21U      H24    C24    N23     109.470    3.000
 21U      H24A   C24    N23     109.470    3.000
 21U      C24    N23    HN23    118.500    3.000
 21U      C24    N23    C7      121.500    3.000
 21U      HN23   N23    C7      120.000    3.000
 21U      N23    C7     O22     123.000    3.000
 21U      N23    C7     C1      116.500    3.000
 21U      O22    C7     C1      120.500    3.000
 21U      C7     C1     H1      108.810    3.000
 21U      C7     C1     C2      109.470    3.000
 21U      C7     C1     N1      111.600    3.000
 21U      H1     C1     C2      108.340    3.000
 21U      H1     C1     N1      109.470    3.000
 21U      C2     C1     N1      105.000    3.000
 21U      C1     C2     H2      109.470    3.000
 21U      C1     C2     H2A     109.470    3.000
 21U      C1     C2     C3      111.000    3.000
 21U      H2     C2     H2A     107.900    3.000
 21U      H2     C2     C3      109.470    3.000
 21U      H2A    C2     C3      109.470    3.000
 21U      C2     C3     H3      109.470    3.000
 21U      C2     C3     H3A     109.470    3.000
 21U      C2     C3     C4      111.000    3.000
 21U      H3     C3     H3A     107.900    3.000
 21U      H3     C3     C4      109.470    3.000
 21U      H3A    C3     C4      109.470    3.000
 21U      C3     C4     H4A     109.470    3.000
 21U      C3     C4     H4      109.470    3.000
 21U      C3     C4     N1      105.000    3.000
 21U      H4A    C4     H4      107.900    3.000
 21U      H4A    C4     N1      109.470    3.000
 21U      H4     C4     N1      109.470    3.000
 21U      C1     N1     C14     121.000    3.000
 21U      C1     N1     C4      112.000    3.000
 21U      C14    N1     C4      127.000    3.000
 21U      N1     C14    O32     123.000    3.000
 21U      N1     C14    C15     116.500    3.000
 21U      O32    C14    C15     120.500    3.000
 21U      C14    C15    H15     108.810    3.000
 21U      C14    C15    N2      109.470    3.000
 21U      C14    C15    C16     109.470    3.000
 21U      H15    C15    N2      109.470    3.000
 21U      H15    C15    C16     108.340    3.000
 21U      N2     C15    C16     109.470    3.000
 21U      C15    N2     HN2A    120.000    3.000
 21U      C15    N2     HN2     120.000    3.000
 21U      HN2A   N2     HN2     120.000    3.000
 21U      C15    C16    H16     109.470    3.000
 21U      C15    C16    H16A    109.470    3.000
 21U      C15    C16    C12     111.000    3.000
 21U      H16    C16    H16A    107.900    3.000
 21U      H16    C16    C12     109.470    3.000
 21U      H16A   C16    C12     109.470    3.000
 21U      C16    C12    H12     108.340    3.000
 21U      C16    C12    C18     111.000    3.000
 21U      C16    C12    C13     111.000    3.000
 21U      H12    C12    C18     108.340    3.000
 21U      H12    C12    C13     108.340    3.000
 21U      C18    C12    C13     111.000    3.000
 21U      C12    C18    H18B    109.470    3.000
 21U      C12    C18    H18A    109.470    3.000
 21U      C12    C18    H18     109.470    3.000
 21U      H18B   C18    H18A    109.470    3.000
 21U      H18B   C18    H18     109.470    3.000
 21U      H18A   C18    H18     109.470    3.000
 21U      C12    C13    H13B    109.470    3.000
 21U      C12    C13    H13A    109.470    3.000
 21U      C12    C13    H13     109.470    3.000
 21U      H13B   C13    H13A    109.470    3.000
 21U      H13B   C13    H13     109.470    3.000
 21U      H13A   C13    H13     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 21U      CONST_1  CL21   C29    C30    C25      180.000    0.000   0
 21U      CONST_2  CL21   C29    C28    C27      180.000    0.000   0
 21U      CONST_3  C29    C28    C27    C26        0.000    0.000   0
 21U      CONST_4  C28    C27    C26    C25        0.000    0.000   0
 21U      CONST_5  C27    C26    C25    C24      180.000    0.000   0
 21U      CONST_6  C26    C25    C30    C29        0.000    0.000   0
 21U      var_1    C26    C25    C24    N23      -90.290   20.000   2
 21U      var_2    C25    C24    N23    C7      -179.992   20.000   3
 21U      CONST_7  C24    N23    C7     C1       180.000    0.000   0
 21U      var_3    N23    C7     C1     N1      -179.948   20.000   3
 21U      var_4    C7     C1     C2     C3      -150.000   20.000   3
 21U      var_5    C1     C2     C3     C4        30.000   20.000   3
 21U      var_6    C2     C3     C4     N1       -30.000   20.000   3
 21U      var_7    C7     C1     N1     C14      -60.000   20.000   3
 21U      var_8    C1     N1     C4     C3        30.000   20.000   1
 21U      CONST_8  C1     N1     C14    C15      180.000    0.000   0
 21U      var_9    N1     C14    C15    C16       79.980   20.000   3
 21U      var_10   C14    C15    N2     HN2      -60.006   20.000   1
 21U      var_11   C14    C15    C16    C12     -174.980   20.000   3
 21U      var_12   C15    C16    C12    C13       64.983   20.000   3
 21U      var_13   C16    C12    C18    H18       59.974   20.000   3
 21U      var_14   C16    C12    C13    H13       59.998   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 21U      chir_01  C15    C16    N2     C14       negativ
 21U      chir_02  C1     N1     C2     C7        negativ
 21U      chir_03  C12    C16    C13    C18       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 21U      plan-1    N2        0.020
 21U      plan-1    C15       0.020
 21U      plan-1    HN2       0.020
 21U      plan-1    HN2A      0.020
 21U      plan-2    C14       0.020
 21U      plan-2    C15       0.020
 21U      plan-2    O32       0.020
 21U      plan-2    N1        0.020
 21U      plan-3    N1        0.020
 21U      plan-3    C14       0.020
 21U      plan-3    C4        0.020
 21U      plan-3    C1        0.020
 21U      plan-4    C7        0.020
 21U      plan-4    C1        0.020
 21U      plan-4    N23       0.020
 21U      plan-4    O22       0.020
 21U      plan-4    HN23      0.020
 21U      plan-5    N23       0.020
 21U      plan-5    C7        0.020
 21U      plan-5    C24       0.020
 21U      plan-5    HN23      0.020
 21U      plan-6    C25       0.020
 21U      plan-6    C24       0.020
 21U      plan-6    C30       0.020
 21U      plan-6    C26       0.020
 21U      plan-6    C29       0.020
 21U      plan-6    C28       0.020
 21U      plan-6    C27       0.020
 21U      plan-6    H30       0.020
 21U      plan-6    CL21      0.020
 21U      plan-6    H28       0.020
 21U      plan-6    H27       0.020
 21U      plan-6    H26       0.020
# ------------------------------------------------------