File: 227.cif

package info (click to toggle)
refmac-dictionary 5.41-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 217,852 kB
file content (465 lines) | stat: -rw-r--r-- 21,933 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
227      227 '6,7-DIMETHOXY-4-{8-[(4-METHYLPIPERAZ' non-polymer        63  34 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_227
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 227           O27    O    OS        0.000      0.000    0.000    0.000
 227           S22    S    ST        0.000      0.752    0.196    1.221
 227           O26    O    OS        0.000      1.352   -0.924    1.915
 227           N25    N    NT        0.000      1.946    1.394    0.954
 227           C30    C    CH2       0.000      1.448    2.682    0.394
 227           H302   H    H         0.000      0.585    3.020    0.972
 227           H301   H    H         0.000      1.152    2.535   -0.647
 227           C29    C    CH2       0.000      3.172    0.929    0.244
 227           H291   H    H         0.000      2.931    0.726   -0.802
 227           H292   H    H         0.000      3.541    0.016    0.715
 227           C31    C    CH2       0.000      4.246    2.013    0.319
 227           H311   H    H         0.000      5.123    1.678   -0.239
 227           H312   H    H         0.000      4.519    2.164    1.366
 227           N33    N    NT        0.000      3.756    3.277   -0.248
 227           C32    C    CH2       0.000      2.556    3.732    0.467
 227           H322   H    H         0.000      2.208    4.662    0.012
 227           H321   H    H         0.000      2.817    3.915    1.511
 227           C34    C    CH3       0.000      4.800    4.300   -0.204
 227           H343   H    H         0.000      5.715    3.883   -0.534
 227           H342   H    H         0.000      4.530    5.105   -0.836
 227           H341   H    H         0.000      4.907    4.649    0.789
 227           C19    C    CR6       0.000     -0.282    1.043    2.363
 227           C23    C    CR16      0.000     -1.343    1.780    1.838
 227           H23    H    H         0.000     -1.485    1.836    0.766
 227           C28    C    CR16      0.000     -2.222    2.444    2.692
 227           H28    H    H         0.000     -3.044    3.018    2.283
 227           C24    C    CR16      0.000     -2.044    2.369    4.073
 227           H24    H    H         0.000     -2.727    2.891    4.732
 227           C20    C    CR6       0.000     -0.987    1.625    4.614
 227           C15    C    CR6       0.000     -0.086    0.971    3.748
 227           C10    C    CH2       0.000      1.047    0.134    4.300
 227           H101   H    H         0.000      1.933    0.293    3.682
 227           H102   H    H         0.000      0.758   -0.918    4.257
 227           N5     N    NT        0.000      1.344    0.505    5.687
 227           C11    C    CH2       0.000      0.167    0.485    6.563
 227           H111   H    H         0.000      0.470    0.662    7.597
 227           H112   H    H         0.000     -0.333   -0.483    6.492
 227           C16    C    CH2       0.000     -0.792    1.593    6.113
 227           H162   H    H         0.000     -0.380    2.547    6.449
 227           H161   H    H         0.000     -1.753    1.421    6.603
 227           C2     C    CR6       0.000      2.434    1.306    6.022
 227           N6     N    NRD6      0.000      2.197    2.493    6.659
 227           C12    C    CR16      0.000      3.276    3.233    6.962
 227           H12    H    H         0.000      3.090    4.173    7.466
 227           N8     N    NRD6      0.000      4.566    2.932    6.706
 227           C3     C    CR66      0.000      4.803    1.766    6.080
 227           C1     C    CR66      0.000      3.755    0.907    5.712
 227           C4     C    CR16      0.000      4.014   -0.310    5.058
 227           H4     H    H         0.000      3.194   -0.961    4.781
 227           C7     C    CR16      0.000      6.104    1.373    5.776
 227           H7     H    H         0.000      6.929    2.019    6.049
 227           C13    C    CR6       0.000      6.369    0.165    5.125
 227           O17    O    O2        0.000      7.660   -0.175    4.849
 227           C21    C    CH3       0.000      8.359   -0.923    5.843
 227           H213   H    H         0.000      9.014   -1.610    5.372
 227           H212   H    H         0.000      8.920   -0.263    6.453
 227           H211   H    H         0.000      7.664   -1.452    6.441
 227           C9     C    CR6       0.000      5.324   -0.678    4.765
 227           O14    O    O2        0.000      5.569   -1.858    4.132
 227           C18    C    CH3       0.000      5.599   -1.834    2.706
 227           H183   H    H         0.000      6.576   -1.592    2.378
 227           H182   H    H         0.000      5.327   -2.787    2.331
 227           H181   H    H         0.000      4.916   -1.107    2.350
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 227      O27    n/a    S22    START
 227      S22    O27    C19    .
 227      O26    S22    .      .
 227      N25    S22    C29    .
 227      C30    N25    H301   .
 227      H302   C30    .      .
 227      H301   C30    .      .
 227      C29    N25    C31    .
 227      H291   C29    .      .
 227      H292   C29    .      .
 227      C31    C29    N33    .
 227      H311   C31    .      .
 227      H312   C31    .      .
 227      N33    C31    C34    .
 227      C32    N33    H321   .
 227      H322   C32    .      .
 227      H321   C32    .      .
 227      C34    N33    H341   .
 227      H343   C34    .      .
 227      H342   C34    .      .
 227      H341   C34    .      .
 227      C19    S22    C15    .
 227      C23    C19    C28    .
 227      H23    C23    .      .
 227      C28    C23    C24    .
 227      H28    C28    .      .
 227      C24    C28    C20    .
 227      H24    C24    .      .
 227      C20    C24    .      .
 227      C15    C19    C10    .
 227      C10    C15    N5     .
 227      H101   C10    .      .
 227      H102   C10    .      .
 227      N5     C10    C2     .
 227      C11    N5     C16    .
 227      H111   C11    .      .
 227      H112   C11    .      .
 227      C16    C11    H161   .
 227      H162   C16    .      .
 227      H161   C16    .      .
 227      C2     N5     N6     .
 227      N6     C2     C12    .
 227      C12    N6     N8     .
 227      H12    C12    .      .
 227      N8     C12    C3     .
 227      C3     N8     C7     .
 227      C1     C3     C4     .
 227      C4     C1     H4     .
 227      H4     C4     .      .
 227      C7     C3     C13    .
 227      H7     C7     .      .
 227      C13    C7     C9     .
 227      O17    C13    C21    .
 227      C21    O17    H211   .
 227      H213   C21    .      .
 227      H212   C21    .      .
 227      H211   C21    .      .
 227      C9     C13    O14    .
 227      O14    C9     C18    .
 227      C18    O14    H181   .
 227      H183   C18    .      .
 227      H182   C18    .      .
 227      H181   C18    .      END
 227      C32    C30    .    ADD
 227      C4     C9     .    ADD
 227      C20    C16    .    ADD
 227      C20    C15    .    ADD
 227      C2     C1     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 227      C34    N33       single      1.469    0.020
 227      H341   C34       single      1.059    0.020
 227      H342   C34       single      1.059    0.020
 227      H343   C34       single      1.059    0.020
 227      C32    N33       single      1.469    0.020
 227      C32    C30       single      1.524    0.020
 227      H321   C32       single      1.092    0.020
 227      H322   C32       single      1.092    0.020
 227      C4     C9        double      1.390    0.020
 227      C4     C1        single      1.390    0.020
 227      H4     C4        single      1.083    0.020
 227      C13    C7        double      1.390    0.020
 227      C7     C3        single      1.390    0.020
 227      H7     C7        single      1.083    0.020
 227      O14    C9        single      1.370    0.020
 227      C9     C13       single      1.487    0.020
 227      O17    C13       single      1.370    0.020
 227      C20    C15       single      1.487    0.020
 227      C20    C24       double      1.390    0.020
 227      C20    C16       single      1.511    0.020
 227      C21    O17       single      1.426    0.020
 227      H211   C21       single      1.059    0.020
 227      H212   C21       single      1.059    0.020
 227      H213   C21       single      1.059    0.020
 227      N5     C10       single      1.469    0.020
 227      C2     N5        single      1.405    0.020
 227      C11    N5        single      1.469    0.020
 227      C18    O14       single      1.426    0.020
 227      H181   C18       single      1.059    0.020
 227      H182   C18       single      1.059    0.020
 227      H183   C18       single      1.059    0.020
 227      C16    C11       single      1.524    0.020
 227      H161   C16       single      1.092    0.020
 227      H162   C16       single      1.092    0.020
 227      C19    S22       single      1.595    0.020
 227      C23    C19       single      1.390    0.020
 227      C15    C19       double      1.487    0.020
 227      O26    S22       double      1.436    0.020
 227      N25    S22       single      1.610    0.020
 227      S22    O27       double      1.436    0.020
 227      C30    N25       single      1.469    0.020
 227      C29    N25       single      1.469    0.020
 227      H301   C30       single      1.092    0.020
 227      H302   C30       single      1.092    0.020
 227      N33    C31       single      1.469    0.020
 227      C31    C29       single      1.524    0.020
 227      H311   C31       single      1.092    0.020
 227      H312   C31       single      1.092    0.020
 227      H291   C29       single      1.092    0.020
 227      H292   C29       single      1.092    0.020
 227      C28    C23       double      1.390    0.020
 227      H23    C23       single      1.083    0.020
 227      C24    C28       single      1.390    0.020
 227      H28    C28       single      1.083    0.020
 227      C10    C15       single      1.511    0.020
 227      H101   C10       single      1.092    0.020
 227      H102   C10       single      1.092    0.020
 227      H24    C24       single      1.083    0.020
 227      H111   C11       single      1.092    0.020
 227      H112   C11       single      1.092    0.020
 227      C2     C1        double      1.490    0.020
 227      N6     C2        single      1.350    0.020
 227      C1     C3        single      1.490    0.020
 227      C12    N6        double      1.337    0.020
 227      N8     C12       single      1.337    0.020
 227      H12    C12       single      1.083    0.020
 227      C3     N8        double      1.350    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 227      O27    S22    O26     109.500    3.000
 227      O27    S22    N25     109.500    3.000
 227      O27    S22    C19     109.500    3.000
 227      O26    S22    N25     109.500    3.000
 227      O26    S22    C19     109.500    3.000
 227      N25    S22    C19     109.500    3.000
 227      S22    N25    C30     109.500    3.000
 227      S22    N25    C29     109.500    3.000
 227      C30    N25    C29     109.470    3.000
 227      N25    C30    H302    109.470    3.000
 227      N25    C30    H301    109.470    3.000
 227      N25    C30    C32     109.470    3.000
 227      H302   C30    H301    107.900    3.000
 227      H302   C30    C32     109.470    3.000
 227      H301   C30    C32     109.470    3.000
 227      N25    C29    H291    109.470    3.000
 227      N25    C29    H292    109.470    3.000
 227      N25    C29    C31     109.470    3.000
 227      H291   C29    H292    107.900    3.000
 227      H291   C29    C31     109.470    3.000
 227      H292   C29    C31     109.470    3.000
 227      C29    C31    H311    109.470    3.000
 227      C29    C31    H312    109.470    3.000
 227      C29    C31    N33     109.470    3.000
 227      H311   C31    H312    107.900    3.000
 227      H311   C31    N33     109.470    3.000
 227      H312   C31    N33     109.470    3.000
 227      C31    N33    C32     109.470    3.000
 227      C31    N33    C34     109.470    3.000
 227      C32    N33    C34     109.470    3.000
 227      N33    C32    H322    109.470    3.000
 227      N33    C32    H321    109.470    3.000
 227      N33    C32    C30     109.470    3.000
 227      H322   C32    H321    107.900    3.000
 227      H322   C32    C30     109.470    3.000
 227      H321   C32    C30     109.470    3.000
 227      N33    C34    H343    109.470    3.000
 227      N33    C34    H342    109.470    3.000
 227      N33    C34    H341    109.470    3.000
 227      H343   C34    H342    109.470    3.000
 227      H343   C34    H341    109.470    3.000
 227      H342   C34    H341    109.470    3.000
 227      S22    C19    C23     120.000    3.000
 227      S22    C19    C15     120.000    3.000
 227      C23    C19    C15     120.000    3.000
 227      C19    C23    H23     120.000    3.000
 227      C19    C23    C28     120.000    3.000
 227      H23    C23    C28     120.000    3.000
 227      C23    C28    H28     120.000    3.000
 227      C23    C28    C24     120.000    3.000
 227      H28    C28    C24     120.000    3.000
 227      C28    C24    H24     120.000    3.000
 227      C28    C24    C20     120.000    3.000
 227      H24    C24    C20     120.000    3.000
 227      C24    C20    C16     120.000    3.000
 227      C24    C20    C15     120.000    3.000
 227      C16    C20    C15     120.000    3.000
 227      C19    C15    C10     120.000    3.000
 227      C19    C15    C20     120.000    3.000
 227      C10    C15    C20     120.000    3.000
 227      C15    C10    H101    109.470    3.000
 227      C15    C10    H102    109.470    3.000
 227      C15    C10    N5      109.500    3.000
 227      H101   C10    H102    107.900    3.000
 227      H101   C10    N5      109.470    3.000
 227      H102   C10    N5      109.470    3.000
 227      C10    N5     C11     109.470    3.000
 227      C10    N5     C2      109.500    3.000
 227      C11    N5     C2      109.500    3.000
 227      N5     C11    H111    109.470    3.000
 227      N5     C11    H112    109.470    3.000
 227      N5     C11    C16     109.470    3.000
 227      H111   C11    H112    107.900    3.000
 227      H111   C11    C16     109.470    3.000
 227      H112   C11    C16     109.470    3.000
 227      C11    C16    H162    109.470    3.000
 227      C11    C16    H161    109.470    3.000
 227      C11    C16    C20     109.470    3.000
 227      H162   C16    H161    107.900    3.000
 227      H162   C16    C20     109.470    3.000
 227      H161   C16    C20     109.470    3.000
 227      N5     C2     N6      120.000    3.000
 227      N5     C2     C1      120.000    3.000
 227      N6     C2     C1      120.000    3.000
 227      C2     N6     C12     120.000    3.000
 227      N6     C12    H12     120.000    3.000
 227      N6     C12    N8      120.000    3.000
 227      H12    C12    N8      120.000    3.000
 227      C12    N8     C3      120.000    3.000
 227      N8     C3     C1      120.000    3.000
 227      N8     C3     C7      120.000    3.000
 227      C1     C3     C7      120.000    3.000
 227      C3     C1     C4      120.000    3.000
 227      C3     C1     C2      120.000    3.000
 227      C4     C1     C2      120.000    3.000
 227      C1     C4     H4      120.000    3.000
 227      C1     C4     C9      120.000    3.000
 227      H4     C4     C9      120.000    3.000
 227      C3     C7     H7      120.000    3.000
 227      C3     C7     C13     120.000    3.000
 227      H7     C7     C13     120.000    3.000
 227      C7     C13    O17     120.000    3.000
 227      C7     C13    C9      120.000    3.000
 227      O17    C13    C9      120.000    3.000
 227      C13    O17    C21     120.000    3.000
 227      O17    C21    H213    109.470    3.000
 227      O17    C21    H212    109.470    3.000
 227      O17    C21    H211    109.470    3.000
 227      H213   C21    H212    109.470    3.000
 227      H213   C21    H211    109.470    3.000
 227      H212   C21    H211    109.470    3.000
 227      C13    C9     O14     120.000    3.000
 227      C13    C9     C4      120.000    3.000
 227      O14    C9     C4      120.000    3.000
 227      C9     O14    C18     120.000    3.000
 227      O14    C18    H183    109.470    3.000
 227      O14    C18    H182    109.470    3.000
 227      O14    C18    H181    109.470    3.000
 227      H183   C18    H182    109.470    3.000
 227      H183   C18    H181    109.470    3.000
 227      H182   C18    H181    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 227      var_1    O27    S22    N25    C29      -79.411   20.000   1
 227      var_2    S22    N25    C30    C32      180.000   20.000   1
 227      var_3    S22    N25    C29    C31      180.000   20.000   1
 227      var_4    N25    C29    C31    N33      -60.000   20.000   3
 227      var_5    C29    C31    N33    C34      180.000   20.000   1
 227      var_6    C31    N33    C32    C30      -60.000   20.000   1
 227      var_7    N33    C32    C30    N25       60.000   20.000   3
 227      var_8    C31    N33    C34    H341     -74.940   20.000   1
 227      var_9    O27    S22    C19    C15      156.168   20.000   1
 227      CONST_1  S22    C19    C23    C28      180.000    0.000   0
 227      CONST_2  C19    C23    C28    C24        0.000    0.000   0
 227      CONST_3  C23    C28    C24    C20        0.000    0.000   0
 227      CONST_4  C28    C24    C20    C16      180.000    0.000   0
 227      var_10   C24    C20    C16    C11      180.000   20.000   2
 227      CONST_5  C24    C20    C15    C19        0.000    0.000   0
 227      CONST_6  S22    C19    C15    C10        0.000    0.000   0
 227      var_11   C19    C15    C10    N5       150.000   20.000   2
 227      var_12   C15    C10    N5     C2       -90.000   20.000   1
 227      var_13   C10    N5     C11    C16      -60.000   20.000   1
 227      var_14   N5     C11    C16    C20       60.000   20.000   3
 227      var_15   C10    N5     C2     N6       119.935   20.000   1
 227      CONST_7  N5     C2     C1     C3       180.000    0.000   0
 227      CONST_8  N5     C2     N6     C12      180.000    0.000   0
 227      CONST_9  C2     N6     C12    N8         0.000    0.000   0
 227      CONST_10 N6     C12    N8     C3         0.000    0.000   0
 227      CONST_11 C12    N8     C3     C7       180.000    0.000   0
 227      CONST_12 N8     C3     C1     C4       180.000    0.000   0
 227      CONST_13 C3     C1     C4     C9         0.000    0.000   0
 227      CONST_14 C1     C4     C9     C13        0.000    0.000   0
 227      CONST_15 N8     C3     C7     C13      180.000    0.000   0
 227      CONST_16 C3     C7     C13    C9         0.000    0.000   0
 227      var_16   C7     C13    O17    C21       89.987   20.000   1
 227      var_17   C13    O17    C21    H211      24.717   20.000   1
 227      CONST_17 C7     C13    C9     O14      180.000    0.000   0
 227      var_18   C13    C9     O14    C18      -90.024   20.000   1
 227      var_19   C9     O14    C18    H181     -32.741   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 227      chir_01  N5     C10    C11    C2        positiv
 227      chir_02  S22    C19    O26    O27       negativ
 227      chir_03  N25    S22    C30    C29       positiv
 227      chir_04  N33    C34    C32    C31       positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 227      plan-1    C4        0.020
 227      plan-1    C9        0.020
 227      plan-1    C1        0.020
 227      plan-1    H4        0.020
 227      plan-1    C7        0.020
 227      plan-1    C13       0.020
 227      plan-1    C3        0.020
 227      plan-1    H7        0.020
 227      plan-1    O14       0.020
 227      plan-1    O17       0.020
 227      plan-1    C2        0.020
 227      plan-1    N5        0.020
 227      plan-1    N6        0.020
 227      plan-1    C12       0.020
 227      plan-1    N8        0.020
 227      plan-1    H12       0.020
 227      plan-2    C20       0.020
 227      plan-2    C16       0.020
 227      plan-2    C15       0.020
 227      plan-2    C24       0.020
 227      plan-2    C19       0.020
 227      plan-2    C23       0.020
 227      plan-2    C28       0.020
 227      plan-2    S22       0.020
 227      plan-2    H23       0.020
 227      plan-2    H28       0.020
 227      plan-2    C10       0.020
 227      plan-2    H24       0.020
# ------------------------------------------------------