File: 2KL.cif

package info (click to toggle)
refmac-dictionary 5.41-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 217,852 kB
file content (419 lines) | stat: -rw-r--r-- 19,294 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
2KL      2KL '2-amino-4-[2,4-dichloro-5-(2-pyrroli' non-polymer        54  31 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_2KL
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 2KL           CL2    CL   CL        0.000      0.000    0.000    0.000
 2KL           C19    C    CR6       0.000     -1.543    0.755   -0.245
 2KL           C18    C    CR6       0.000     -2.702    0.114    0.177
 2KL           O24    O    O2        0.000     -2.625   -1.100    0.781
 2KL           C25    C    CH2       0.000     -3.855   -1.701    1.191
 2KL           H251   H    H         0.000     -4.497   -1.845    0.319
 2KL           H252   H    H         0.000     -4.358   -1.047    1.907
 2KL           C26    C    CH2       0.000     -3.570   -3.054    1.846
 2KL           H261   H    H         0.000     -2.990   -3.675    1.160
 2KL           H262   H    H         0.000     -4.514   -3.553    2.077
 2KL           N27    N    NT        0.000     -2.808   -2.847    3.085
 2KL           C31    C    CH2       0.000     -1.438   -2.376    2.791
 2KL           H311   H    H         0.000     -1.367   -1.287    2.836
 2KL           H312   H    H         0.000     -1.092   -2.722    1.815
 2KL           C30    C    CH2       0.000     -0.558   -3.000    3.904
 2KL           H301   H    H         0.000     -0.603   -2.450    4.846
 2KL           H302   H    H         0.000      0.485   -3.126    3.607
 2KL           C29    C    CH2       0.000     -1.220   -4.391    4.082
 2KL           H291   H    H         0.000     -1.070   -4.801    5.083
 2KL           H292   H    H         0.000     -0.879   -5.115    3.338
 2KL           C28    C    CH2       0.000     -2.719   -4.095    3.865
 2KL           H282   H    H         0.000     -3.227   -3.964    4.822
 2KL           H281   H    H         0.000     -3.194   -4.907    3.310
 2KL           C17    C    CR16      0.000     -3.935    0.713   -0.017
 2KL           H17    H    H         0.000     -4.839    0.215    0.311
 2KL           C20    C    CR16      0.000     -1.616    1.990   -0.865
 2KL           H20    H    H         0.000     -0.710    2.482   -1.196
 2KL           C21    C    CR6       0.000     -2.842    2.595   -1.063
 2KL           CL1    CL   CL        0.000     -2.929    4.145   -1.841
 2KL           C10    C    CR6       0.000     -4.010    1.961   -0.636
 2KL           C4     C    CR6       0.000     -5.325    2.607   -0.847
 2KL           N1     N    NRD6      0.000     -5.513    3.875   -0.510
 2KL           C2     C    CR6       0.000     -6.687    4.465   -0.686
 2KL           N11    N    NH2       0.000     -6.836    5.788   -0.307
 2KL           H112   H    H         0.000     -6.057    6.299    0.099
 2KL           H111   H    H         0.000     -7.724    6.263   -0.430
 2KL           N3     N    NRD6      0.000     -7.720    3.831   -1.210
 2KL           C6     C    CR56      0.000     -7.624    2.554   -1.589
 2KL           S7     S    S2        0.000     -8.805    1.465   -2.307
 2KL           C5     C    CR56      0.000     -6.405    1.877   -1.422
 2KL           C9     C    CR15      0.000     -6.458    0.552   -1.863
 2KL           H9     H    H         0.000     -5.603   -0.111   -1.805
 2KL           C8     C    CR5       0.000     -7.636    0.157   -2.363
 2KL           C12    C    C         0.000     -7.913   -1.188   -2.882
 2KL           O13    O    O         0.000     -7.038   -2.033   -2.881
 2KL           N14    N    NH1       0.000     -9.140   -1.488   -3.355
 2KL           H14    H    H         0.000     -9.866   -0.787   -3.355
 2KL           C15    C    CH2       0.000     -9.418   -2.832   -3.867
 2KL           H151   H    H         0.000     -9.253   -3.565   -3.074
 2KL           H152   H    H         0.000     -8.752   -3.048   -4.704
 2KL           C16    C    CH3       0.000    -10.873   -2.908   -4.337
 2KL           H163   H    H         0.000    -11.078   -3.879   -4.709
 2KL           H162   H    H         0.000    -11.522   -2.699   -3.525
 2KL           H161   H    H         0.000    -11.036   -2.197   -5.107
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 2KL      CL2    n/a    C19    START
 2KL      C19    CL2    C20    .
 2KL      C18    C19    C17    .
 2KL      O24    C18    C25    .
 2KL      C25    O24    C26    .
 2KL      H251   C25    .      .
 2KL      H252   C25    .      .
 2KL      C26    C25    N27    .
 2KL      H261   C26    .      .
 2KL      H262   C26    .      .
 2KL      N27    C26    C31    .
 2KL      C31    N27    C30    .
 2KL      H311   C31    .      .
 2KL      H312   C31    .      .
 2KL      C30    C31    C29    .
 2KL      H301   C30    .      .
 2KL      H302   C30    .      .
 2KL      C29    C30    C28    .
 2KL      H291   C29    .      .
 2KL      H292   C29    .      .
 2KL      C28    C29    H281   .
 2KL      H282   C28    .      .
 2KL      H281   C28    .      .
 2KL      C17    C18    H17    .
 2KL      H17    C17    .      .
 2KL      C20    C19    C21    .
 2KL      H20    C20    .      .
 2KL      C21    C20    C10    .
 2KL      CL1    C21    .      .
 2KL      C10    C21    C4     .
 2KL      C4     C10    C5     .
 2KL      N1     C4     C2     .
 2KL      C2     N1     N3     .
 2KL      N11    C2     H111   .
 2KL      H112   N11    .      .
 2KL      H111   N11    .      .
 2KL      N3     C2     C6     .
 2KL      C6     N3     S7     .
 2KL      S7     C6     .      .
 2KL      C5     C4     C9     .
 2KL      C9     C5     C8     .
 2KL      H9     C9     .      .
 2KL      C8     C9     C12    .
 2KL      C12    C8     N14    .
 2KL      O13    C12    .      .
 2KL      N14    C12    C15    .
 2KL      H14    N14    .      .
 2KL      C15    N14    C16    .
 2KL      H151   C15    .      .
 2KL      H152   C15    .      .
 2KL      C16    C15    H161   .
 2KL      H163   C16    .      .
 2KL      H162   C16    .      .
 2KL      H161   C16    .      END
 2KL      C8     S7     .    ADD
 2KL      C5     C6     .    ADD
 2KL      C10    C17    .    ADD
 2KL      N27    C28    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 2KL      O13    C12       double      1.220    0.020
 2KL      N14    C12       single      1.330    0.020
 2KL      C12    C8        single      1.490    0.020
 2KL      C15    N14       single      1.450    0.020
 2KL      C16    C15       single      1.513    0.020
 2KL      C8     S7        single      1.745    0.020
 2KL      C8     C9        double      1.387    0.020
 2KL      S7     C6        single      1.695    0.020
 2KL      C9     C5        single      1.440    0.020
 2KL      C5     C6        single      1.490    0.020
 2KL      C5     C4        double      1.490    0.020
 2KL      C6     N3        double      1.355    0.020
 2KL      N3     C2        single      1.350    0.020
 2KL      N11    C2        single      1.355    0.020
 2KL      C2     N1        double      1.350    0.020
 2KL      N1     C4        single      1.350    0.020
 2KL      C4     C10       single      1.487    0.020
 2KL      C10    C17       single      1.390    0.020
 2KL      C10    C21       double      1.487    0.020
 2KL      C17    C18       double      1.390    0.020
 2KL      CL1    C21       single      1.795    0.020
 2KL      C21    C20       single      1.390    0.020
 2KL      C20    C19       double      1.390    0.020
 2KL      C19    CL2       single      1.795    0.020
 2KL      C18    C19       single      1.487    0.020
 2KL      O24    C18       single      1.370    0.020
 2KL      C25    O24       single      1.426    0.020
 2KL      C26    C25       single      1.524    0.020
 2KL      N27    C26       single      1.469    0.020
 2KL      N27    C28       single      1.469    0.020
 2KL      C31    N27       single      1.469    0.020
 2KL      C28    C29       single      1.524    0.020
 2KL      C30    C31       single      1.524    0.020
 2KL      C29    C30       single      1.524    0.020
 2KL      H14    N14       single      1.010    0.020
 2KL      H151   C15       single      1.092    0.020
 2KL      H152   C15       single      1.092    0.020
 2KL      H161   C16       single      1.059    0.020
 2KL      H162   C16       single      1.059    0.020
 2KL      H163   C16       single      1.059    0.020
 2KL      H9     C9        single      1.083    0.020
 2KL      H111   N11       single      1.010    0.020
 2KL      H112   N11       single      1.010    0.020
 2KL      H17    C17       single      1.083    0.020
 2KL      H20    C20       single      1.083    0.020
 2KL      H251   C25       single      1.092    0.020
 2KL      H252   C25       single      1.092    0.020
 2KL      H261   C26       single      1.092    0.020
 2KL      H262   C26       single      1.092    0.020
 2KL      H281   C28       single      1.092    0.020
 2KL      H282   C28       single      1.092    0.020
 2KL      H311   C31       single      1.092    0.020
 2KL      H312   C31       single      1.092    0.020
 2KL      H291   C29       single      1.092    0.020
 2KL      H292   C29       single      1.092    0.020
 2KL      H301   C30       single      1.092    0.020
 2KL      H302   C30       single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 2KL      CL2    C19    C18     120.000    3.000
 2KL      CL2    C19    C20     120.000    3.000
 2KL      C18    C19    C20     120.000    3.000
 2KL      C19    C18    O24     120.000    3.000
 2KL      C19    C18    C17     120.000    3.000
 2KL      O24    C18    C17     120.000    3.000
 2KL      C18    O24    C25     120.000    3.000
 2KL      O24    C25    H251    109.470    3.000
 2KL      O24    C25    H252    109.470    3.000
 2KL      O24    C25    C26     109.470    3.000
 2KL      H251   C25    H252    107.900    3.000
 2KL      H251   C25    C26     109.470    3.000
 2KL      H252   C25    C26     109.470    3.000
 2KL      C25    C26    H261    109.470    3.000
 2KL      C25    C26    H262    109.470    3.000
 2KL      C25    C26    N27     109.470    3.000
 2KL      H261   C26    H262    107.900    3.000
 2KL      H261   C26    N27     109.470    3.000
 2KL      H262   C26    N27     109.470    3.000
 2KL      C26    N27    C31     109.470    3.000
 2KL      C26    N27    C28     109.470    3.000
 2KL      C31    N27    C28     109.470    3.000
 2KL      N27    C31    H311    109.470    3.000
 2KL      N27    C31    H312    109.470    3.000
 2KL      N27    C31    C30     109.470    3.000
 2KL      H311   C31    H312    107.900    3.000
 2KL      H311   C31    C30     109.470    3.000
 2KL      H312   C31    C30     109.470    3.000
 2KL      C31    C30    H301    109.470    3.000
 2KL      C31    C30    H302    109.470    3.000
 2KL      C31    C30    C29     111.000    3.000
 2KL      H301   C30    H302    107.900    3.000
 2KL      H301   C30    C29     109.470    3.000
 2KL      H302   C30    C29     109.470    3.000
 2KL      C30    C29    H291    109.470    3.000
 2KL      C30    C29    H292    109.470    3.000
 2KL      C30    C29    C28     111.000    3.000
 2KL      H291   C29    H292    107.900    3.000
 2KL      H291   C29    C28     109.470    3.000
 2KL      H292   C29    C28     109.470    3.000
 2KL      C29    C28    H282    109.470    3.000
 2KL      C29    C28    H281    109.470    3.000
 2KL      C29    C28    N27     109.470    3.000
 2KL      H282   C28    H281    107.900    3.000
 2KL      H282   C28    N27     109.470    3.000
 2KL      H281   C28    N27     109.470    3.000
 2KL      C18    C17    H17     120.000    3.000
 2KL      C18    C17    C10     120.000    3.000
 2KL      H17    C17    C10     120.000    3.000
 2KL      C19    C20    H20     120.000    3.000
 2KL      C19    C20    C21     120.000    3.000
 2KL      H20    C20    C21     120.000    3.000
 2KL      C20    C21    CL1     120.000    3.000
 2KL      C20    C21    C10     120.000    3.000
 2KL      CL1    C21    C10     120.000    3.000
 2KL      C21    C10    C4      120.000    3.000
 2KL      C21    C10    C17     120.000    3.000
 2KL      C4     C10    C17     120.000    3.000
 2KL      C10    C4     N1      120.000    3.000
 2KL      C10    C4     C5      120.000    3.000
 2KL      N1     C4     C5      120.000    3.000
 2KL      C4     N1     C2      120.000    3.000
 2KL      N1     C2     N11     120.000    3.000
 2KL      N1     C2     N3      120.000    3.000
 2KL      N11    C2     N3      120.000    3.000
 2KL      C2     N11    H112    120.000    3.000
 2KL      C2     N11    H111    120.000    3.000
 2KL      H112   N11    H111    120.000    3.000
 2KL      C2     N3     C6      120.000    3.000
 2KL      N3     C6     S7      120.000    3.000
 2KL      N3     C6     C5      120.000    3.000
 2KL      S7     C6     C5      120.000    3.000
 2KL      C6     S7     C8       91.570    3.000
 2KL      C4     C5     C9      132.000    3.000
 2KL      C4     C5     C6      120.000    3.000
 2KL      C9     C5     C6      120.000    3.000
 2KL      C5     C9     H9      108.000    3.000
 2KL      C5     C9     C8      108.000    3.000
 2KL      H9     C9     C8      126.000    3.000
 2KL      C9     C8     C12     126.000    3.000
 2KL      C9     C8     S7      108.000    3.000
 2KL      C12    C8     S7      108.000    3.000
 2KL      C8     C12    O13     120.500    3.000
 2KL      C8     C12    N14     120.000    3.000
 2KL      O13    C12    N14     123.000    3.000
 2KL      C12    N14    H14     120.000    3.000
 2KL      C12    N14    C15     121.500    3.000
 2KL      H14    N14    C15     118.500    3.000
 2KL      N14    C15    H151    109.470    3.000
 2KL      N14    C15    H152    109.470    3.000
 2KL      N14    C15    C16     112.000    3.000
 2KL      H151   C15    H152    107.900    3.000
 2KL      H151   C15    C16     109.470    3.000
 2KL      H152   C15    C16     109.470    3.000
 2KL      C15    C16    H163    109.470    3.000
 2KL      C15    C16    H162    109.470    3.000
 2KL      C15    C16    H161    109.470    3.000
 2KL      H163   C16    H162    109.470    3.000
 2KL      H163   C16    H161    109.470    3.000
 2KL      H162   C16    H161    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 2KL      CONST_1  CL2    C19    C18    C17      180.000    0.000   0
 2KL      var_1    C19    C18    O24    C25      179.969   20.000   1
 2KL      var_2    C18    O24    C25    C26     -179.999   20.000   1
 2KL      var_3    O24    C25    C26    N27       65.020   20.000   3
 2KL      var_4    C25    C26    N27    C31      -69.130   20.000   1
 2KL      var_5    C26    N27    C28    C29      120.000   20.000   1
 2KL      var_6    C26    N27    C31    C30     -150.000   20.000   1
 2KL      var_7    N27    C31    C30    C29       30.000   20.000   3
 2KL      var_8    C31    C30    C29    C28      -30.000   20.000   3
 2KL      var_9    C30    C29    C28    N27       30.000   20.000   3
 2KL      CONST_2  C19    C18    C17    C10        0.000    0.000   0
 2KL      CONST_3  CL2    C19    C20    C21      180.000    0.000   0
 2KL      CONST_4  C19    C20    C21    C10        0.000    0.000   0
 2KL      CONST_5  C20    C21    C10    C4       180.000    0.000   0
 2KL      CONST_6  C21    C10    C17    C18        0.000    0.000   0
 2KL      CONST_7  C21    C10    C4     C5       180.000    0.000   0
 2KL      CONST_8  C10    C4     N1     C2       180.000    0.000   0
 2KL      CONST_9  C4     N1     C2     N3         0.000    0.000   0
 2KL      CONST_10 N1     C2     N11    H111    -179.936    0.000   0
 2KL      CONST_11 N1     C2     N3     C6         0.000    0.000   0
 2KL      CONST_12 C2     N3     C6     S7       180.000    0.000   0
 2KL      CONST_13 N3     C6     S7     C8       180.000    0.000   0
 2KL      CONST_14 C10    C4     C5     C9         0.000    0.000   0
 2KL      CONST_15 C4     C5     C6     N3         0.000    0.000   0
 2KL      CONST_16 C4     C5     C9     C8       180.000    0.000   0
 2KL      CONST_17 C5     C9     C8     C12      180.000    0.000   0
 2KL      CONST_18 C9     C8     S7     C6         0.000    0.000   0
 2KL      var_10   C9     C8     C12    N14      179.448   20.000   1
 2KL      CONST_19 C8     C12    N14    C15      180.000    0.000   0
 2KL      var_11   C12    N14    C15    C16      179.992   20.000   3
 2KL      var_12   N14    C15    C16    H161      59.988   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 2KL      chir_01  N27    C26    C28    C31       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 2KL      plan-1    C12       0.020
 2KL      plan-1    O13       0.020
 2KL      plan-1    N14       0.020
 2KL      plan-1    C8        0.020
 2KL      plan-1    H14       0.020
 2KL      plan-2    N14       0.020
 2KL      plan-2    C12       0.020
 2KL      plan-2    C15       0.020
 2KL      plan-2    H14       0.020
 2KL      plan-3    C8        0.020
 2KL      plan-3    C12       0.020
 2KL      plan-3    S7        0.020
 2KL      plan-3    C9        0.020
 2KL      plan-3    C5        0.020
 2KL      plan-3    H9        0.020
 2KL      plan-3    C6        0.020
 2KL      plan-3    C4        0.020
 2KL      plan-3    N3        0.020
 2KL      plan-3    C2        0.020
 2KL      plan-3    N1        0.020
 2KL      plan-3    N11       0.020
 2KL      plan-3    C10       0.020
 2KL      plan-3    H112      0.020
 2KL      plan-3    H111      0.020
 2KL      plan-4    N11       0.020
 2KL      plan-4    C2        0.020
 2KL      plan-4    H111      0.020
 2KL      plan-4    H112      0.020
 2KL      plan-5    C10       0.020
 2KL      plan-5    C4        0.020
 2KL      plan-5    C17       0.020
 2KL      plan-5    C21       0.020
 2KL      plan-5    C20       0.020
 2KL      plan-5    C19       0.020
 2KL      plan-5    C18       0.020
 2KL      plan-5    H17       0.020
 2KL      plan-5    CL1       0.020
 2KL      plan-5    H20       0.020
 2KL      plan-5    CL2       0.020
 2KL      plan-5    O24       0.020
# ------------------------------------------------------