File: 2OH.cif

package info (click to toggle)
refmac-dictionary 5.41-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 217,852 kB
file content (279 lines) | stat: -rw-r--r-- 12,139 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
2OH      2OH '4,4'-PROPANE-2,2-DIYLDIPHENOL       ' non-polymer        33  17 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_2OH
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 2OH           O1     O    OH1       0.000      0.000    0.000    0.000
 2OH           HO1    H    H         0.000      0.422    0.646    0.583
 2OH           C8     C    CR6       0.000     -1.347    0.199    0.001
 2OH           C9     C    CR16      0.000     -1.925    1.053    0.941
 2OH           H9     H    H         0.000     -1.302    1.557    1.670
 2OH           C10    C    CR16      0.000     -3.305    1.258    0.940
 2OH           H10    H    H         0.000     -3.782    1.915    1.657
 2OH           C7     C    CR16      0.000     -2.148   -0.450   -0.938
 2OH           H7     H    H         0.000     -1.698   -1.113   -1.667
 2OH           C6     C    CR16      0.000     -3.528   -0.245   -0.938
 2OH           H6     H    H         0.000     -4.175   -0.735   -1.655
 2OH           C1     C    CR6       0.000     -4.019    0.595    0.000
 2OH           C2     C    CT        0.000     -5.581    0.828    0.000
 2OH           C5     C    CH3       0.000     -6.263    0.056   -1.188
 2OH           H53    H    H         0.000     -5.872    0.396   -2.116
 2OH           H52    H    H         0.000     -6.078   -0.987   -1.098
 2OH           H51    H    H         0.000     -7.313    0.221   -1.175
 2OH           C3     C    CH3       0.000     -5.761    2.346   -0.398
 2OH           H33    H    H         0.000     -5.370    2.974    0.366
 2OH           H32    H    H         0.000     -5.246    2.550   -1.306
 2OH           H31    H    H         0.000     -6.792    2.570   -0.531
 2OH           C4     C    CR6       0.000     -6.220    0.424    1.286
 2OH           C11    C    CR16      0.000     -6.123   -0.895    1.729
 2OH           H11    H    H         0.000     -5.582   -1.625    1.139
 2OH           C12    C    CR16      0.000     -6.720   -1.274    2.930
 2OH           H12    H    H         0.000     -6.645   -2.298    3.274
 2OH           C15    C    CR16      0.000     -6.915    1.364    2.046
 2OH           H15    H    H         0.000     -6.990    2.389    1.703
 2OH           C14    C    CR16      0.000     -7.512    0.987    3.248
 2OH           H14    H    H         0.000     -8.051    1.717    3.839
 2OH           C13    C    CR6       0.000     -7.416   -0.333    3.690
 2OH           O2     O    OH1       0.000     -8.000   -0.703    4.862
 2OH           HO2    H    H         0.000     -8.009   -1.667    4.928
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 2OH      O1     n/a    C8     START
 2OH      HO1    O1     .      .
 2OH      C8     O1     C7     .
 2OH      C9     C8     C10    .
 2OH      H9     C9     .      .
 2OH      C10    C9     H10    .
 2OH      H10    C10    .      .
 2OH      C7     C8     C6     .
 2OH      H7     C7     .      .
 2OH      C6     C7     C1     .
 2OH      H6     C6     .      .
 2OH      C1     C6     C2     .
 2OH      C2     C1     C4     .
 2OH      C5     C2     H51    .
 2OH      H53    C5     .      .
 2OH      H52    C5     .      .
 2OH      H51    C5     .      .
 2OH      C3     C2     H31    .
 2OH      H33    C3     .      .
 2OH      H32    C3     .      .
 2OH      H31    C3     .      .
 2OH      C4     C2     C15    .
 2OH      C11    C4     C12    .
 2OH      H11    C11    .      .
 2OH      C12    C11    H12    .
 2OH      H12    C12    .      .
 2OH      C15    C4     C14    .
 2OH      H15    C15    .      .
 2OH      C14    C15    C13    .
 2OH      H14    C14    .      .
 2OH      C13    C14    O2     .
 2OH      O2     C13    HO2    .
 2OH      HO2    O2     .      END
 2OH      C13    C12    .    ADD
 2OH      C1     C10    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 2OH      O2     C13       single      1.362    0.020
 2OH      HO2    O2        single      0.967    0.020
 2OH      C13    C12       single      1.390    0.020
 2OH      C13    C14       double      1.390    0.020
 2OH      C12    C11       double      1.390    0.020
 2OH      H12    C12       single      1.083    0.020
 2OH      C11    C4        single      1.390    0.020
 2OH      H11    C11       single      1.083    0.020
 2OH      C14    C15       single      1.390    0.020
 2OH      H14    C14       single      1.083    0.020
 2OH      C15    C4        double      1.390    0.020
 2OH      H15    C15       single      1.083    0.020
 2OH      C4     C2        single      1.500    0.020
 2OH      C2     C1        single      1.500    0.020
 2OH      C3     C2        single      1.524    0.020
 2OH      C5     C2        single      1.524    0.020
 2OH      H31    C3        single      1.059    0.020
 2OH      H32    C3        single      1.059    0.020
 2OH      H33    C3        single      1.059    0.020
 2OH      H51    C5        single      1.059    0.020
 2OH      H52    C5        single      1.059    0.020
 2OH      H53    C5        single      1.059    0.020
 2OH      C1     C10       double      1.390    0.020
 2OH      C1     C6        single      1.390    0.020
 2OH      C10    C9        single      1.390    0.020
 2OH      H10    C10       single      1.083    0.020
 2OH      C9     C8        double      1.390    0.020
 2OH      H9     C9        single      1.083    0.020
 2OH      C6     C7        double      1.390    0.020
 2OH      H6     C6        single      1.083    0.020
 2OH      C7     C8        single      1.390    0.020
 2OH      H7     C7        single      1.083    0.020
 2OH      C8     O1        single      1.362    0.020
 2OH      HO1    O1        single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 2OH      HO1    O1     C8      109.470    3.000
 2OH      O1     C8     C9      120.000    3.000
 2OH      O1     C8     C7      120.000    3.000
 2OH      C9     C8     C7      120.000    3.000
 2OH      C8     C9     H9      120.000    3.000
 2OH      C8     C9     C10     120.000    3.000
 2OH      H9     C9     C10     120.000    3.000
 2OH      C9     C10    H10     120.000    3.000
 2OH      C9     C10    C1      120.000    3.000
 2OH      H10    C10    C1      120.000    3.000
 2OH      C8     C7     H7      120.000    3.000
 2OH      C8     C7     C6      120.000    3.000
 2OH      H7     C7     C6      120.000    3.000
 2OH      C7     C6     H6      120.000    3.000
 2OH      C7     C6     C1      120.000    3.000
 2OH      H6     C6     C1      120.000    3.000
 2OH      C6     C1     C2      120.000    3.000
 2OH      C6     C1     C10     120.000    3.000
 2OH      C2     C1     C10     120.000    3.000
 2OH      C1     C2     C5      109.500    3.000
 2OH      C1     C2     C3      109.500    3.000
 2OH      C1     C2     C4      109.500    3.000
 2OH      C5     C2     C3      111.000    3.000
 2OH      C5     C2     C4      109.500    3.000
 2OH      C3     C2     C4      109.500    3.000
 2OH      C2     C5     H53     109.470    3.000
 2OH      C2     C5     H52     109.470    3.000
 2OH      C2     C5     H51     109.470    3.000
 2OH      H53    C5     H52     109.470    3.000
 2OH      H53    C5     H51     109.470    3.000
 2OH      H52    C5     H51     109.470    3.000
 2OH      C2     C3     H33     109.470    3.000
 2OH      C2     C3     H32     109.470    3.000
 2OH      C2     C3     H31     109.470    3.000
 2OH      H33    C3     H32     109.470    3.000
 2OH      H33    C3     H31     109.470    3.000
 2OH      H32    C3     H31     109.470    3.000
 2OH      C2     C4     C11     120.000    3.000
 2OH      C2     C4     C15     120.000    3.000
 2OH      C11    C4     C15     120.000    3.000
 2OH      C4     C11    H11     120.000    3.000
 2OH      C4     C11    C12     120.000    3.000
 2OH      H11    C11    C12     120.000    3.000
 2OH      C11    C12    H12     120.000    3.000
 2OH      C11    C12    C13     120.000    3.000
 2OH      H12    C12    C13     120.000    3.000
 2OH      C4     C15    H15     120.000    3.000
 2OH      C4     C15    C14     120.000    3.000
 2OH      H15    C15    C14     120.000    3.000
 2OH      C15    C14    H14     120.000    3.000
 2OH      C15    C14    C13     120.000    3.000
 2OH      H14    C14    C13     120.000    3.000
 2OH      C14    C13    O2      120.000    3.000
 2OH      C14    C13    C12     120.000    3.000
 2OH      O2     C13    C12     120.000    3.000
 2OH      C13    O2     HO2     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 2OH      var_1    HO1    O1     C8     C7       168.690   20.000   1
 2OH      CONST_1  O1     C8     C9     C10      180.000    0.000   0
 2OH      CONST_2  C8     C9     C10    C1         0.000    0.000   0
 2OH      CONST_3  O1     C8     C7     C6       180.000    0.000   0
 2OH      CONST_4  C8     C7     C6     C1         0.000    0.000   0
 2OH      CONST_5  C7     C6     C1     C2       180.000    0.000   0
 2OH      CONST_6  C6     C1     C10    C9         0.000    0.000   0
 2OH      var_2    C6     C1     C2     C4       120.037   20.000   1
 2OH      var_3    C1     C2     C5     H51      179.973   20.000   1
 2OH      var_4    C1     C2     C3     H31      173.685   20.000   1
 2OH      var_5    C1     C2     C4     C15      120.041   20.000   1
 2OH      CONST_7  C2     C4     C11    C12      180.000    0.000   0
 2OH      CONST_8  C4     C11    C12    C13        0.000    0.000   0
 2OH      CONST_9  C2     C4     C15    C14      180.000    0.000   0
 2OH      CONST_10 C4     C15    C14    C13        0.000    0.000   0
 2OH      CONST_11 C15    C14    C13    O2       180.000    0.000   0
 2OH      CONST_12 C14    C13    C12    C11        0.000    0.000   0
 2OH      var_6    C14    C13    O2     HO2      167.746   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 2OH      chir_01  C2     C4     C3     C5        positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 2OH      plan-1    C13       0.020
 2OH      plan-1    O2        0.020
 2OH      plan-1    C12       0.020
 2OH      plan-1    C14       0.020
 2OH      plan-1    C11       0.020
 2OH      plan-1    C15       0.020
 2OH      plan-1    C4        0.020
 2OH      plan-1    H12       0.020
 2OH      plan-1    H11       0.020
 2OH      plan-1    H14       0.020
 2OH      plan-1    H15       0.020
 2OH      plan-1    C2        0.020
 2OH      plan-2    C1        0.020
 2OH      plan-2    C2        0.020
 2OH      plan-2    C10       0.020
 2OH      plan-2    C6        0.020
 2OH      plan-2    C9        0.020
 2OH      plan-2    C7        0.020
 2OH      plan-2    C8        0.020
 2OH      plan-2    H10       0.020
 2OH      plan-2    H9        0.020
 2OH      plan-2    H6        0.020
 2OH      plan-2    H7        0.020
 2OH      plan-2    O1        0.020
# ------------------------------------------------------