File: P24.cif

package info (click to toggle)
refmac-dictionary 5.41-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 217,852 kB
file content (212 lines) | stat: -rw-r--r-- 8,937 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
P24      P24 '1-(AMINOETHYL)AMINO-4-AMINOBUTANE   ' non-polymer        26   9 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_P24
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 P24           N9     N    NH2       0.000      0.000    0.000    0.000
 P24           HN91   H    H         0.000      0.609   -0.801    0.120
 P24           HN92   H    H         0.000      0.137    0.820    0.580
 P24           C8     C    CH2       0.000     -1.071   -0.027   -1.004
 P24           H81    H    H         0.000     -0.988   -0.940   -1.599
 P24           H82    H    H         0.000     -0.977    0.842   -1.658
 P24           C7     C    CH2       0.000     -2.430    0.004   -0.304
 P24           H71    H    H         0.000     -2.511    0.917    0.291
 P24           H72    H    H         0.000     -2.521   -0.865    0.352
 P24           C6     C    CH2       0.000     -3.546   -0.025   -1.349
 P24           H61    H    H         0.000     -3.462   -0.938   -1.944
 P24           H62    H    H         0.000     -3.453    0.844   -2.004
 P24           C5     C    CH2       0.000     -4.904    0.005   -0.648
 P24           H51    H    H         0.000     -4.984    0.917   -0.052
 P24           H52    H    H         0.000     -4.994   -0.865    0.006
 P24           N4     N    NH1       0.000     -5.975   -0.021   -1.652
 P24           HN4    H    H         0.000     -5.860   -0.054   -2.655
 P24           C3     C    CH2       0.000     -7.245    0.010   -0.916
 P24           H31    H    H         0.000     -7.296    0.921   -0.317
 P24           H32    H    H         0.000     -7.305   -0.860   -0.259
 P24           C2     C    CH2       0.000     -8.411   -0.016   -1.907
 P24           H21    H    H         0.000     -8.358   -0.928   -2.506
 P24           H22    H    H         0.000     -8.348    0.854   -2.564
 P24           N1     N    NH2       0.000     -9.682    0.015   -1.171
 P24           HN12   H    H         0.000    -10.297    0.816   -1.247
 P24           HN11   H    H         0.000     -9.951   -0.765   -0.583
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 P24      N9     n/a    C8     START
 P24      HN91   N9     .      .
 P24      HN92   N9     .      .
 P24      C8     N9     C7     .
 P24      H81    C8     .      .
 P24      H82    C8     .      .
 P24      C7     C8     C6     .
 P24      H71    C7     .      .
 P24      H72    C7     .      .
 P24      C6     C7     C5     .
 P24      H61    C6     .      .
 P24      H62    C6     .      .
 P24      C5     C6     N4     .
 P24      H51    C5     .      .
 P24      H52    C5     .      .
 P24      N4     C5     C3     .
 P24      HN4    N4     .      .
 P24      C3     N4     C2     .
 P24      H31    C3     .      .
 P24      H32    C3     .      .
 P24      C2     C3     N1     .
 P24      H21    C2     .      .
 P24      H22    C2     .      .
 P24      N1     C2     HN11   .
 P24      HN12   N1     .      .
 P24      HN11   N1     .      END
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 P24      N1     C2        single      1.450    0.020
 P24      HN11   N1        single      1.010    0.020
 P24      HN12   N1        single      1.010    0.020
 P24      C2     C3        single      1.524    0.020
 P24      H21    C2        single      1.092    0.020
 P24      H22    C2        single      1.092    0.020
 P24      C3     N4        single      1.450    0.020
 P24      H31    C3        single      1.092    0.020
 P24      H32    C3        single      1.092    0.020
 P24      N4     C5        single      1.450    0.020
 P24      HN4    N4        single      1.010    0.020
 P24      C5     C6        single      1.524    0.020
 P24      H51    C5        single      1.092    0.020
 P24      H52    C5        single      1.092    0.020
 P24      C6     C7        single      1.524    0.020
 P24      H61    C6        single      1.092    0.020
 P24      H62    C6        single      1.092    0.020
 P24      C7     C8        single      1.524    0.020
 P24      H71    C7        single      1.092    0.020
 P24      H72    C7        single      1.092    0.020
 P24      C8     N9        single      1.450    0.020
 P24      H81    C8        single      1.092    0.020
 P24      H82    C8        single      1.092    0.020
 P24      HN91   N9        single      1.010    0.020
 P24      HN92   N9        single      1.010    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 P24      HN91   N9     HN92    120.000    3.000
 P24      HN91   N9     C8      120.000    3.000
 P24      HN92   N9     C8      120.000    3.000
 P24      N9     C8     H81     109.470    3.000
 P24      N9     C8     H82     109.470    3.000
 P24      N9     C8     C7      109.470    3.000
 P24      H81    C8     H82     107.900    3.000
 P24      H81    C8     C7      109.470    3.000
 P24      H82    C8     C7      109.470    3.000
 P24      C8     C7     H71     109.470    3.000
 P24      C8     C7     H72     109.470    3.000
 P24      C8     C7     C6      111.000    3.000
 P24      H71    C7     H72     107.900    3.000
 P24      H71    C7     C6      109.470    3.000
 P24      H72    C7     C6      109.470    3.000
 P24      C7     C6     H61     109.470    3.000
 P24      C7     C6     H62     109.470    3.000
 P24      C7     C6     C5      111.000    3.000
 P24      H61    C6     H62     107.900    3.000
 P24      H61    C6     C5      109.470    3.000
 P24      H62    C6     C5      109.470    3.000
 P24      C6     C5     H51     109.470    3.000
 P24      C6     C5     H52     109.470    3.000
 P24      C6     C5     N4      112.000    3.000
 P24      H51    C5     H52     107.900    3.000
 P24      H51    C5     N4      109.470    3.000
 P24      H52    C5     N4      109.470    3.000
 P24      C5     N4     HN4     118.500    3.000
 P24      C5     N4     C3      120.000    3.000
 P24      HN4    N4     C3      118.500    3.000
 P24      N4     C3     H31     109.470    3.000
 P24      N4     C3     H32     109.470    3.000
 P24      N4     C3     C2      112.000    3.000
 P24      H31    C3     H32     107.900    3.000
 P24      H31    C3     C2      109.470    3.000
 P24      H32    C3     C2      109.470    3.000
 P24      C3     C2     H21     109.470    3.000
 P24      C3     C2     H22     109.470    3.000
 P24      C3     C2     N1      109.470    3.000
 P24      H21    C2     H22     107.900    3.000
 P24      H21    C2     N1      109.470    3.000
 P24      H22    C2     N1      109.470    3.000
 P24      C2     N1     HN12    120.000    3.000
 P24      C2     N1     HN11    120.000    3.000
 P24      HN12   N1     HN11    120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 P24      var_1    HN92   N9     C8     C7       -66.251   20.000   1
 P24      var_2    N9     C8     C7     C6      -179.959   20.000   3
 P24      var_3    C8     C7     C6     C5       179.959   20.000   3
 P24      var_4    C7     C6     C5     N4       179.917   20.000   3
 P24      var_5    C6     C5     N4     C3       179.990   20.000   3
 P24      var_6    C5     N4     C3     C2      -179.986   20.000   3
 P24      var_7    N4     C3     C2     N1       180.000   20.000   3
 P24      var_8    C3     C2     N1     HN11     -66.114   20.000   1
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 P24      plan-1    N1        0.020
 P24      plan-1    C2        0.020
 P24      plan-1    HN11      0.020
 P24      plan-1    HN12      0.020
 P24      plan-2    N4        0.020
 P24      plan-2    C3        0.020
 P24      plan-2    C5        0.020
 P24      plan-2    HN4       0.020
 P24      plan-3    N9        0.020
 P24      plan-3    C8        0.020
 P24      plan-3    HN91      0.020
 P24      plan-3    HN92      0.020
# ------------------------------------------------------