File: P49.cif

package info (click to toggle)
refmac-dictionary 5.41-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 217,852 kB
file content (326 lines) | stat: -rw-r--r-- 14,603 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
P49      P49 '"1-methyl-8-(phenylamino)-4,5-dihydr' non-polymer        38  24 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_P49
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 P49           O24    O    OC       -0.500      0.000    0.000    0.000
 P49           C22    C    C         0.000     -0.469    1.158    0.053
 P49           O23    O    OC       -0.500      0.300    2.145    0.060
 P49           C13    C    CR5       0.000     -1.930    1.362    0.109
 P49           C9     C    CR5       0.000     -2.907    0.364    0.108
 P49           C7     C    CH2       0.000     -2.807   -1.132    0.040
 P49           H71C   H    H         0.000     -1.864   -1.452    0.491
 P49           H72C   H    H         0.000     -2.835   -1.449   -1.004
 P49           C8     C    CH2       0.000     -3.975   -1.762    0.798
 P49           H81C   H    H         0.000     -3.772   -1.666    1.867
 P49           H82C   H    H         0.000     -4.017   -2.820    0.531
 P49           C5     C    CR6       0.000     -5.288   -1.110    0.475
 P49           C1     C    CR16      0.000     -6.457   -1.847    0.456
 P49           H1     H    H         0.000     -6.434   -2.917    0.618
 P49           N12    N    NRD5      0.000     -2.562    2.525    0.168
 P49           N11    N    NR5       0.000     -3.839    2.345    0.205
 P49           C14    C    CH3       0.000     -4.841    3.413    0.265
 P49           H143   H    H         0.000     -4.465    4.270   -0.227
 P49           H142   H    H         0.000     -5.726    3.087   -0.213
 P49           H141   H    H         0.000     -5.045    3.643    1.276
 P49           C10    C    CR5       0.000     -4.113    1.025    0.184
 P49           C6     C    CR6       0.000     -5.375    0.268    0.227
 P49           N4     N    NRD6      0.000     -6.559    0.829    0.033
 P49           C3     C    CR6       0.000     -7.657    0.085    0.040
 P49           N2     N    NRD6      0.000     -7.606   -1.225    0.238
 P49           N15    N    NH1       0.000     -8.886    0.690   -0.165
 P49           H15    H    H         0.000     -8.949    1.696   -0.233
 P49           C16    C    CR6       0.000    -10.041   -0.090   -0.277
 P49           C21    C    CR16      0.000     -9.978   -1.345   -0.868
 P49           H21    H    H         0.000     -9.035   -1.719   -1.247
 P49           C20    C    CR16      0.000    -11.119   -2.116   -0.971
 P49           H20    H    H         0.000    -11.069   -3.098   -1.424
 P49           C19    C    CR16      0.000    -12.325   -1.634   -0.497
 P49           H19    H    H         0.000    -13.219   -2.239   -0.583
 P49           C18    C    CR16      0.000    -12.393   -0.383    0.087
 P49           H18    H    H         0.000    -13.340   -0.009    0.457
 P49           C17    C    CR16      0.000    -11.254    0.391    0.198
 P49           H17    H    H         0.000    -11.307    1.372    0.655
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 P49      O24    n/a    C22    START
 P49      C22    O24    C13    .
 P49      O23    C22    .      .
 P49      C13    C22    N12    .
 P49      C9     C13    C7     .
 P49      C7     C9     C8     .
 P49      H71C   C7     .      .
 P49      H72C   C7     .      .
 P49      C8     C7     C5     .
 P49      H81C   C8     .      .
 P49      H82C   C8     .      .
 P49      C5     C8     C1     .
 P49      C1     C5     H1     .
 P49      H1     C1     .      .
 P49      N12    C13    N11    .
 P49      N11    N12    C10    .
 P49      C14    N11    H141   .
 P49      H143   C14    .      .
 P49      H142   C14    .      .
 P49      H141   C14    .      .
 P49      C10    N11    C6     .
 P49      C6     C10    N4     .
 P49      N4     C6     C3     .
 P49      C3     N4     N15    .
 P49      N2     C3     .      .
 P49      N15    C3     C16    .
 P49      H15    N15    .      .
 P49      C16    N15    C21    .
 P49      C21    C16    C20    .
 P49      H21    C21    .      .
 P49      C20    C21    C19    .
 P49      H20    C20    .      .
 P49      C19    C20    C18    .
 P49      H19    C19    .      .
 P49      C18    C19    C17    .
 P49      H18    C18    .      .
 P49      C17    C18    H17    .
 P49      H17    C17    .      END
 P49      C1     N2     .    ADD
 P49      C5     C6     .    ADD
 P49      C9     C10    .    ADD
 P49      C16    C17    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 P49      C1     N2        single      1.337    0.020
 P49      C1     C5        double      1.390    0.020
 P49      N2     C3        double      1.350    0.020
 P49      C3     N4        single      1.350    0.020
 P49      N15    C3        single      1.350    0.020
 P49      N4     C6        double      1.350    0.020
 P49      C5     C6        single      1.487    0.020
 P49      C5     C8        single      1.511    0.020
 P49      C6     C10       single      1.490    0.020
 P49      C8     C7        single      1.524    0.020
 P49      C7     C9        single      1.510    0.020
 P49      C9     C10       double      1.490    0.020
 P49      C9     C13       single      1.490    0.020
 P49      C10    N11       single      1.337    0.020
 P49      N11    N12       single      1.402    0.020
 P49      C14    N11       single      1.485    0.020
 P49      N12    C13       double      1.350    0.020
 P49      C13    C22       single      1.490    0.020
 P49      C16    N15       single      1.350    0.020
 P49      C16    C17       single      1.390    0.020
 P49      C21    C16       double      1.390    0.020
 P49      C17    C18       double      1.390    0.020
 P49      C18    C19       single      1.390    0.020
 P49      C19    C20       double      1.390    0.020
 P49      C20    C21       single      1.390    0.020
 P49      O23    C22       deloc       1.250    0.020
 P49      C22    O24       deloc       1.250    0.020
 P49      H1     C1        single      1.083    0.020
 P49      H15    N15       single      1.010    0.020
 P49      H81C   C8        single      1.092    0.020
 P49      H82C   C8        single      1.092    0.020
 P49      H71C   C7        single      1.092    0.020
 P49      H72C   C7        single      1.092    0.020
 P49      H141   C14       single      1.059    0.020
 P49      H142   C14       single      1.059    0.020
 P49      H143   C14       single      1.059    0.020
 P49      H17    C17       single      1.083    0.020
 P49      H21    C21       single      1.083    0.020
 P49      H18    C18       single      1.083    0.020
 P49      H19    C19       single      1.083    0.020
 P49      H20    C20       single      1.083    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 P49      O24    C22    O23     123.000    3.000
 P49      O24    C22    C13     120.000    3.000
 P49      O23    C22    C13     120.000    3.000
 P49      C22    C13    C9      117.000    3.000
 P49      C22    C13    N12     126.000    3.000
 P49      C9     C13    N12     108.000    3.000
 P49      C13    C9     C7      126.000    3.000
 P49      C13    C9     C10     108.000    3.000
 P49      C7     C9     C10     126.000    3.000
 P49      C9     C7     H71C    109.470    3.000
 P49      C9     C7     H72C    109.470    3.000
 P49      C9     C7     C8      109.470    3.000
 P49      H71C   C7     H72C    107.900    3.000
 P49      H71C   C7     C8      109.470    3.000
 P49      H72C   C7     C8      109.470    3.000
 P49      C7     C8     H81C    109.470    3.000
 P49      C7     C8     H82C    109.470    3.000
 P49      C7     C8     C5      109.470    3.000
 P49      H81C   C8     H82C    107.900    3.000
 P49      H81C   C8     C5      109.470    3.000
 P49      H82C   C8     C5      109.470    3.000
 P49      C8     C5     C1      120.000    3.000
 P49      C8     C5     C6      120.000    3.000
 P49      C1     C5     C6      120.000    3.000
 P49      C5     C1     H1      120.000    3.000
 P49      C5     C1     N2      120.000    3.000
 P49      H1     C1     N2      120.000    3.000
 P49      C13    N12    N11     108.000    3.000
 P49      N12    N11    C14     108.000    3.000
 P49      N12    N11    C10     108.000    3.000
 P49      C14    N11    C10     126.000    3.000
 P49      N11    C14    H143    109.470    3.000
 P49      N11    C14    H142    109.470    3.000
 P49      N11    C14    H141    109.470    3.000
 P49      H143   C14    H142    109.470    3.000
 P49      H143   C14    H141    109.470    3.000
 P49      H142   C14    H141    109.470    3.000
 P49      N11    C10    C6      126.000    3.000
 P49      N11    C10    C9      108.000    3.000
 P49      C6     C10    C9      126.000    3.000
 P49      C10    C6     N4      120.000    3.000
 P49      C10    C6     C5      120.000    3.000
 P49      N4     C6     C5      120.000    3.000
 P49      C6     N4     C3      120.000    3.000
 P49      N4     C3     N2      120.000    3.000
 P49      N4     C3     N15     120.000    3.000
 P49      N2     C3     N15     120.000    3.000
 P49      C3     N2     C1      120.000    3.000
 P49      C3     N15    H15     120.000    3.000
 P49      C3     N15    C16     120.000    3.000
 P49      H15    N15    C16     120.000    3.000
 P49      N15    C16    C21     120.000    3.000
 P49      N15    C16    C17     120.000    3.000
 P49      C21    C16    C17     120.000    3.000
 P49      C16    C21    H21     120.000    3.000
 P49      C16    C21    C20     120.000    3.000
 P49      H21    C21    C20     120.000    3.000
 P49      C21    C20    H20     120.000    3.000
 P49      C21    C20    C19     120.000    3.000
 P49      H20    C20    C19     120.000    3.000
 P49      C20    C19    H19     120.000    3.000
 P49      C20    C19    C18     120.000    3.000
 P49      H19    C19    C18     120.000    3.000
 P49      C19    C18    H18     120.000    3.000
 P49      C19    C18    C17     120.000    3.000
 P49      H18    C18    C17     120.000    3.000
 P49      C18    C17    H17     120.000    3.000
 P49      C18    C17    C16     120.000    3.000
 P49      H17    C17    C16     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 P49      var_1    O24    C22    C13    N12     -179.991   20.000   1
 P49      CONST_1  C22    C13    C9     C7         0.000    0.000   0
 P49      CONST_2  C13    C9     C10    N11        0.000    0.000   0
 P49      var_2    C13    C9     C7     C8       150.000   20.000   2
 P49      var_3    C9     C7     C8     C5        60.000   20.000   3
 P49      var_4    C7     C8     C5     C1       150.000   20.000   2
 P49      CONST_3  C8     C5     C6     C10        0.000    0.000   0
 P49      CONST_4  C8     C5     C1     N2       180.000    0.000   0
 P49      CONST_5  C5     C1     N2     C3         0.000    0.000   0
 P49      CONST_6  C22    C13    N12    N11      180.000    0.000   0
 P49      CONST_7  C13    N12    N11    C10        0.000    0.000   0
 P49      var_5    N12    N11    C14    H141     -89.917   20.000   1
 P49      CONST_8  N12    N11    C10    C6       180.000    0.000   0
 P49      var_6    N11    C10    C6     N4         0.000   20.000   1
 P49      CONST_9  C10    C6     N4     C3       180.000    0.000   0
 P49      CONST_10 C6     N4     C3     N15      180.000    0.000   0
 P49      CONST_11 N4     C3     N2     C1         0.000    0.000   0
 P49      var_7    N4     C3     N15    C16      174.444   20.000   1
 P49      var_8    C3     N15    C16    C21      -33.713   20.000   1
 P49      CONST_12 N15    C16    C17    C18      180.000    0.000   0
 P49      CONST_13 N15    C16    C21    C20      180.000    0.000   0
 P49      CONST_14 C16    C21    C20    C19        0.000    0.000   0
 P49      CONST_15 C21    C20    C19    C18        0.000    0.000   0
 P49      CONST_16 C20    C19    C18    C17        0.000    0.000   0
 P49      CONST_17 C19    C18    C17    C16        0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 P49      plan-1    C1        0.020
 P49      plan-1    N2        0.020
 P49      plan-1    C5        0.020
 P49      plan-1    H1        0.020
 P49      plan-1    C3        0.020
 P49      plan-1    N4        0.020
 P49      plan-1    C6        0.020
 P49      plan-1    N15       0.020
 P49      plan-1    C8        0.020
 P49      plan-1    C10       0.020
 P49      plan-1    H15       0.020
 P49      plan-2    C9        0.020
 P49      plan-2    C7        0.020
 P49      plan-2    C10       0.020
 P49      plan-2    C13       0.020
 P49      plan-2    N11       0.020
 P49      plan-2    N12       0.020
 P49      plan-2    C6        0.020
 P49      plan-2    C14       0.020
 P49      plan-2    C22       0.020
 P49      plan-3    N15       0.020
 P49      plan-3    C3        0.020
 P49      plan-3    C16       0.020
 P49      plan-3    H15       0.020
 P49      plan-4    C16       0.020
 P49      plan-4    N15       0.020
 P49      plan-4    C17       0.020
 P49      plan-4    C21       0.020
 P49      plan-4    C18       0.020
 P49      plan-4    C19       0.020
 P49      plan-4    C20       0.020
 P49      plan-4    H17       0.020
 P49      plan-4    H18       0.020
 P49      plan-4    H19       0.020
 P49      plan-4    H20       0.020
 P49      plan-4    H21       0.020
 P49      plan-4    H15       0.020
 P49      plan-5    C22       0.020
 P49      plan-5    C13       0.020
 P49      plan-5    O23       0.020
 P49      plan-5    O24       0.020
# ------------------------------------------------------