File: P63.cif

package info (click to toggle)
refmac-dictionary 5.41-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 217,852 kB
file content (377 lines) | stat: -rw-r--r-- 17,057 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
P63      P63 'N-(3-(8-CYANO-4-(PHENYLAMINO)PYRAZOL' non-polymer        45  29 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_P63
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 P63           O29    O    O         0.000      0.000    0.000    0.000
 P63           C28    C    C         0.000      0.482   -0.962   -0.560
 P63           C30    C    CH3       0.000      1.814   -0.840   -1.257
 P63           H303   H    H         0.000      1.749   -0.107   -2.019
 P63           H302   H    H         0.000      2.556   -0.554   -0.556
 P63           H301   H    H         0.000      2.076   -1.772   -1.687
 P63           N27    N    NH1       0.000     -0.172   -2.140   -0.560
 P63           HN27   H    H         0.000      0.265   -2.961   -0.953
 P63           C20    C    CR6       0.000     -1.458   -2.226   -0.015
 P63           C19    C    CR16      0.000     -2.335   -1.157   -0.133
 P63           H19    H    H         0.000     -2.026   -0.255   -0.646
 P63           C21    C    CR16      0.000     -1.858   -3.381    0.645
 P63           H21    H    H         0.000     -1.174   -4.216    0.738
 P63           C22    C    CR16      0.000     -3.128   -3.467    1.183
 P63           H22    H    H         0.000     -3.439   -4.370    1.693
 P63           C23    C    CR16      0.000     -4.002   -2.403    1.072
 P63           H23    H    H         0.000     -4.993   -2.470    1.502
 P63           C18    C    CR6       0.000     -3.610   -1.247    0.409
 P63           N17    N    NH1       0.000     -4.496   -0.171    0.292
 P63           HN17   H    H         0.000     -4.148    0.776    0.320
 P63           C07    C    CR6       0.000     -5.848   -0.406    0.139
 P63           N06    N    NRD6      0.000     -6.283   -1.649   -0.007
 P63           C04    C    CR56      0.000     -7.588   -1.888   -0.157
 P63           C03    C    CR5       0.000     -8.343   -3.059   -0.327
 P63           C25    C    CSP       0.000     -7.839   -4.398   -0.387
 P63           N26    N    NS        0.000     -7.438   -5.460   -0.435
 P63           C02    C    CR15      0.000     -9.692   -2.665   -0.429
 P63           H02    H    H         0.000    -10.535   -3.330   -0.569
 P63           N08    N    NRD6      0.000     -6.698    0.625    0.140
 P63           C09    C    CR6       0.000     -7.995    0.430   -0.006
 P63           N05    N    NR56      0.000     -8.474   -0.843   -0.158
 P63           N01    N    NRD5      0.000     -9.759   -1.364   -0.328
 P63           N10    N    NH1       0.000     -8.858    1.497   -0.003
 P63           HN10   H    H         0.000     -9.856    1.340   -0.031
 P63           C11    C    CR6       0.000     -8.356    2.802    0.037
 P63           C16    C    CR16      0.000     -9.047    3.791    0.726
 P63           H16    H    H         0.000     -9.977    3.554    1.228
 P63           C15    C    CR16      0.000     -8.546    5.078    0.769
 P63           H15    H    H         0.000     -9.079    5.847    1.313
 P63           C14    C    CR16      0.000     -7.365    5.384    0.118
 P63           H14    H    H         0.000     -6.977    6.394    0.150
 P63           C13    C    CR16      0.000     -6.679    4.402   -0.573
 P63           H13    H    H         0.000     -5.754    4.645   -1.081
 P63           C12    C    CR16      0.000     -7.171    3.113   -0.616
 P63           H12    H    H         0.000     -6.633    2.345   -1.157
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 P63      O29    n/a    C28    START
 P63      C28    O29    N27    .
 P63      C30    C28    H301   .
 P63      H303   C30    .      .
 P63      H302   C30    .      .
 P63      H301   C30    .      .
 P63      N27    C28    C20    .
 P63      HN27   N27    .      .
 P63      C20    N27    C21    .
 P63      C19    C20    H19    .
 P63      H19    C19    .      .
 P63      C21    C20    C22    .
 P63      H21    C21    .      .
 P63      C22    C21    C23    .
 P63      H22    C22    .      .
 P63      C23    C22    C18    .
 P63      H23    C23    .      .
 P63      C18    C23    N17    .
 P63      N17    C18    C07    .
 P63      HN17   N17    .      .
 P63      C07    N17    N08    .
 P63      N06    C07    C04    .
 P63      C04    N06    C03    .
 P63      C03    C04    C02    .
 P63      C25    C03    N26    .
 P63      N26    C25    .      .
 P63      C02    C03    H02    .
 P63      H02    C02    .      .
 P63      N08    C07    C09    .
 P63      C09    N08    N10    .
 P63      N05    C09    N01    .
 P63      N01    N05    .      .
 P63      N10    C09    C11    .
 P63      HN10   N10    .      .
 P63      C11    N10    C16    .
 P63      C16    C11    C15    .
 P63      H16    C16    .      .
 P63      C15    C16    C14    .
 P63      H15    C15    .      .
 P63      C14    C15    C13    .
 P63      H14    C14    .      .
 P63      C13    C14    C12    .
 P63      H13    C13    .      .
 P63      C12    C13    H12    .
 P63      H12    C12    .      END
 P63      N01    C02    .    ADD
 P63      C04    N05    .    ADD
 P63      C11    C12    .    ADD
 P63      C18    C19    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 P63      N01    C02       double      1.350    0.020
 P63      N01    N05       single      1.402    0.020
 P63      C02    C03       single      1.387    0.020
 P63      H02    C02       single      1.083    0.020
 P63      C25    C03       single      1.335    0.020
 P63      C03    C04       double      1.490    0.020
 P63      C04    N06       single      1.355    0.020
 P63      C04    N05       single      1.337    0.020
 P63      N05    C09       single      1.337    0.020
 P63      N06    C07       double      1.350    0.020
 P63      C07    N17       single      1.350    0.020
 P63      N08    C07       single      1.350    0.020
 P63      C09    N08       double      1.350    0.020
 P63      N10    C09       single      1.350    0.020
 P63      C11    N10       single      1.350    0.020
 P63      HN10   N10       single      1.010    0.020
 P63      C16    C11       double      1.390    0.020
 P63      C11    C12       single      1.390    0.020
 P63      C12    C13       double      1.390    0.020
 P63      H12    C12       single      1.083    0.020
 P63      C13    C14       single      1.390    0.020
 P63      H13    C13       single      1.083    0.020
 P63      C14    C15       double      1.390    0.020
 P63      H14    C14       single      1.083    0.020
 P63      C15    C16       single      1.390    0.020
 P63      H15    C15       single      1.083    0.020
 P63      H16    C16       single      1.083    0.020
 P63      N17    C18       single      1.350    0.020
 P63      HN17   N17       single      1.010    0.020
 P63      C18    C19       double      1.390    0.020
 P63      C18    C23       single      1.390    0.020
 P63      C19    C20       single      1.390    0.020
 P63      H19    C19       single      1.083    0.020
 P63      C20    N27       single      1.350    0.020
 P63      C21    C20       double      1.390    0.020
 P63      C22    C21       single      1.390    0.020
 P63      H21    C21       single      1.083    0.020
 P63      C23    C22       double      1.390    0.020
 P63      H22    C22       single      1.083    0.020
 P63      H23    C23       single      1.083    0.020
 P63      N26    C25       triple      1.158    0.020
 P63      N27    C28       single      1.330    0.020
 P63      HN27   N27       single      1.010    0.020
 P63      C28    O29       double      1.220    0.020
 P63      C30    C28       single      1.500    0.020
 P63      H301   C30       single      1.059    0.020
 P63      H302   C30       single      1.059    0.020
 P63      H303   C30       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 P63      O29    C28    C30     123.000    3.000
 P63      O29    C28    N27     123.000    3.000
 P63      C30    C28    N27     116.500    3.000
 P63      C28    C30    H303    109.470    3.000
 P63      C28    C30    H302    109.470    3.000
 P63      C28    C30    H301    109.470    3.000
 P63      H303   C30    H302    109.470    3.000
 P63      H303   C30    H301    109.470    3.000
 P63      H302   C30    H301    109.470    3.000
 P63      C28    N27    HN27    120.000    3.000
 P63      C28    N27    C20     120.000    3.000
 P63      HN27   N27    C20     120.000    3.000
 P63      N27    C20    C19     120.000    3.000
 P63      N27    C20    C21     120.000    3.000
 P63      C19    C20    C21     120.000    3.000
 P63      C20    C19    H19     120.000    3.000
 P63      C20    C19    C18     120.000    3.000
 P63      H19    C19    C18     120.000    3.000
 P63      C20    C21    H21     120.000    3.000
 P63      C20    C21    C22     120.000    3.000
 P63      H21    C21    C22     120.000    3.000
 P63      C21    C22    H22     120.000    3.000
 P63      C21    C22    C23     120.000    3.000
 P63      H22    C22    C23     120.000    3.000
 P63      C22    C23    H23     120.000    3.000
 P63      C22    C23    C18     120.000    3.000
 P63      H23    C23    C18     120.000    3.000
 P63      C23    C18    N17     120.000    3.000
 P63      C23    C18    C19     120.000    3.000
 P63      N17    C18    C19     120.000    3.000
 P63      C18    N17    HN17    120.000    3.000
 P63      C18    N17    C07     120.000    3.000
 P63      HN17   N17    C07     120.000    3.000
 P63      N17    C07    N06     120.000    3.000
 P63      N17    C07    N08     120.000    3.000
 P63      N06    C07    N08     120.000    3.000
 P63      C07    N06    C04     120.000    3.000
 P63      N06    C04    C03     120.000    3.000
 P63      N06    C04    N05     120.000    3.000
 P63      C03    C04    N05     108.000    3.000
 P63      C04    C03    C25     108.000    3.000
 P63      C04    C03    C02     108.000    3.000
 P63      C25    C03    C02     108.000    3.000
 P63      C03    C25    N26     180.000    3.000
 P63      C03    C02    H02     126.000    3.000
 P63      C03    C02    N01     108.000    3.000
 P63      H02    C02    N01     126.000    3.000
 P63      C07    N08    C09     120.000    3.000
 P63      N08    C09    N05     120.000    3.000
 P63      N08    C09    N10     120.000    3.000
 P63      N05    C09    N10     120.000    3.000
 P63      C09    N05    N01     120.000    3.000
 P63      C09    N05    C04     120.000    3.000
 P63      N01    N05    C04     120.000    3.000
 P63      N05    N01    C02     108.000    3.000
 P63      C09    N10    HN10    120.000    3.000
 P63      C09    N10    C11     120.000    3.000
 P63      HN10   N10    C11     120.000    3.000
 P63      N10    C11    C16     120.000    3.000
 P63      N10    C11    C12     120.000    3.000
 P63      C16    C11    C12     120.000    3.000
 P63      C11    C16    H16     120.000    3.000
 P63      C11    C16    C15     120.000    3.000
 P63      H16    C16    C15     120.000    3.000
 P63      C16    C15    H15     120.000    3.000
 P63      C16    C15    C14     120.000    3.000
 P63      H15    C15    C14     120.000    3.000
 P63      C15    C14    H14     120.000    3.000
 P63      C15    C14    C13     120.000    3.000
 P63      H14    C14    C13     120.000    3.000
 P63      C14    C13    H13     120.000    3.000
 P63      C14    C13    C12     120.000    3.000
 P63      H13    C13    C12     120.000    3.000
 P63      C13    C12    H12     120.000    3.000
 P63      C13    C12    C11     120.000    3.000
 P63      H12    C12    C11     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 P63      var_1    O29    C28    C30    H301    -179.987   20.000   1
 P63      CONST_1  O29    C28    N27    C20        0.000    0.000   0
 P63      var_2    C28    N27    C20    C21     -145.316   20.000   1
 P63      CONST_2  N27    C20    C19    C18      180.000    0.000   0
 P63      CONST_3  N27    C20    C21    C22      180.000    0.000   0
 P63      CONST_4  C20    C21    C22    C23        0.000    0.000   0
 P63      CONST_5  C21    C22    C23    C18        0.000    0.000   0
 P63      CONST_6  C22    C23    C18    N17      180.000    0.000   0
 P63      CONST_7  C23    C18    C19    C20        0.000    0.000   0
 P63      var_3    C23    C18    N17    C07      -34.925   20.000   1
 P63      var_4    C18    N17    C07    N08      174.459   20.000   1
 P63      CONST_8  N17    C07    N06    C04      180.000    0.000   0
 P63      CONST_9  C07    N06    C04    C03      180.000    0.000   0
 P63      CONST_10 N06    C04    N05    C09        0.000    0.000   0
 P63      CONST_11 N06    C04    C03    C02      180.000    0.000   0
 P63      var_5    C04    C03    C25    N26      -50.220   20.000   1
 P63      CONST_12 C04    C03    C02    N01        0.000    0.000   0
 P63      CONST_13 N17    C07    N08    C09      180.000    0.000   0
 P63      CONST_14 C07    N08    C09    N10      180.000    0.000   0
 P63      CONST_15 N08    C09    N05    N01      180.000    0.000   0
 P63      CONST_16 C09    N05    N01    C02      180.000    0.000   0
 P63      CONST_17 N05    N01    C02    C03        0.000    0.000   0
 P63      var_6    N08    C09    N10    C11        5.565   20.000   1
 P63      var_7    C09    N10    C11    C16     -145.395   20.000   1
 P63      CONST_18 N10    C11    C12    C13      180.000    0.000   0
 P63      CONST_19 N10    C11    C16    C15      180.000    0.000   0
 P63      CONST_20 C11    C16    C15    C14        0.000    0.000   0
 P63      CONST_21 C16    C15    C14    C13        0.000    0.000   0
 P63      CONST_22 C15    C14    C13    C12        0.000    0.000   0
 P63      CONST_23 C14    C13    C12    C11        0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 P63      plan-1    N01       0.020
 P63      plan-1    C02       0.020
 P63      plan-1    N05       0.020
 P63      plan-1    C03       0.020
 P63      plan-1    H02       0.020
 P63      plan-1    C04       0.020
 P63      plan-1    C25       0.020
 P63      plan-1    N06       0.020
 P63      plan-1    C07       0.020
 P63      plan-1    N08       0.020
 P63      plan-1    C09       0.020
 P63      plan-1    N17       0.020
 P63      plan-1    N10       0.020
 P63      plan-1    HN17      0.020
 P63      plan-1    HN10      0.020
 P63      plan-2    N10       0.020
 P63      plan-2    C09       0.020
 P63      plan-2    C11       0.020
 P63      plan-2    HN10      0.020
 P63      plan-3    C11       0.020
 P63      plan-3    N10       0.020
 P63      plan-3    C12       0.020
 P63      plan-3    C16       0.020
 P63      plan-3    C13       0.020
 P63      plan-3    C14       0.020
 P63      plan-3    C15       0.020
 P63      plan-3    H12       0.020
 P63      plan-3    H13       0.020
 P63      plan-3    H14       0.020
 P63      plan-3    H15       0.020
 P63      plan-3    H16       0.020
 P63      plan-3    HN10      0.020
 P63      plan-4    N17       0.020
 P63      plan-4    C07       0.020
 P63      plan-4    C18       0.020
 P63      plan-4    HN17      0.020
 P63      plan-5    C18       0.020
 P63      plan-5    N17       0.020
 P63      plan-5    C19       0.020
 P63      plan-5    C23       0.020
 P63      plan-5    C20       0.020
 P63      plan-5    C21       0.020
 P63      plan-5    C22       0.020
 P63      plan-5    H19       0.020
 P63      plan-5    N27       0.020
 P63      plan-5    H21       0.020
 P63      plan-5    H22       0.020
 P63      plan-5    H23       0.020
 P63      plan-5    HN17      0.020
 P63      plan-5    HN27      0.020
 P63      plan-6    N27       0.020
 P63      plan-6    C20       0.020
 P63      plan-6    C28       0.020
 P63      plan-6    HN27      0.020
 P63      plan-7    C28       0.020
 P63      plan-7    N27       0.020
 P63      plan-7    O29       0.020
 P63      plan-7    C30       0.020
 P63      plan-7    HN27      0.020
# ------------------------------------------------------