File: P99.cif

package info (click to toggle)
refmac-dictionary 5.41-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 217,852 kB
file content (339 lines) | stat: -rw-r--r-- 15,089 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
P99      P99 '2-[2,6-difluoro-4-({2-[(phenylsulfon' non-polymer        42  26 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_P99
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 P99           F26    F    F         0.000      0.000    0.000    0.000
 P99           C25    C    CR6       0.000     -0.819   -1.047   -0.240
 P99           C06    C    CR6       0.000     -0.289   -2.321   -0.393
 P99           O05    O    O2        0.000      1.055   -2.515   -0.301
 P99           C04    C    CH2       0.000      1.580   -2.805    0.996
 P99           H04    H    H         0.000      1.124   -3.721    1.377
 P99           H04A   H    H         0.000      1.354   -1.979    1.673
 P99           C02    C    C         0.000      3.073   -2.987    0.903
 P99           O03    O    O         0.000      3.632   -2.879   -0.167
 P99           N01    N    NH2       0.000      3.788   -3.270    2.011
 P99           HN0A   H    H         0.000      4.792   -3.393    1.954
 P99           HN01   H    H         0.000      3.325   -3.361    2.908
 P99           C24    C    CR16      0.000     -2.184   -0.849   -0.338
 P99           H24    H    H         0.000     -2.596    0.146   -0.227
 P99           C10    C    CR6       0.000     -3.027   -1.927   -0.580
 P99           C09    C    CR16      0.000     -2.497   -3.202   -0.727
 P99           H09    H    H         0.000     -3.153   -4.043   -0.916
 P99           C07    C    CR6       0.000     -1.131   -3.398   -0.633
 P99           F08    F    F         0.000     -0.616   -4.639   -0.777
 P99           S11    S    S2        0.000     -4.767   -1.676   -0.697
 P99           C12    C    CH2       0.000     -4.940    0.111   -0.440
 P99           H12    H    H         0.000     -4.385    0.645   -1.214
 P99           H12A   H    H         0.000     -4.541    0.378    0.541
 P99           C13    C    CH2       0.000     -6.420    0.496   -0.514
 P99           H13    H    H         0.000     -6.974   -0.040    0.260
 P99           H13A   H    H         0.000     -6.817    0.228   -1.495
 P99           N14    N    NH1       0.000     -6.559    1.939   -0.306
 P99           HN14   H    H         0.000     -5.789    2.472    0.075
 P99           S15    S    ST        0.000     -7.979    2.698   -0.694
 P99           O16    O    OS        0.000     -7.810    4.066   -0.348
 P99           O17    O    OS        0.000     -8.320    2.264   -2.003
 P99           C18    C    CR6       0.000     -9.222    2.062    0.381
 P99           C23    C    CR16      0.000     -9.957    0.953    0.008
 P99           H23    H    H         0.000     -9.773    0.478   -0.948
 P99           C22    C    CR16      0.000    -10.928    0.451    0.854
 P99           H22    H    H         0.000    -11.499   -0.423    0.566
 P99           C21    C    CR16      0.000    -11.170    1.064    2.069
 P99           H21    H    H         0.000    -11.934    0.673    2.731
 P99           C20    C    CR16      0.000    -10.439    2.177    2.440
 P99           H20    H    H         0.000    -10.630    2.658    3.391
 P99           C19    C    CR16      0.000     -9.464    2.676    1.596
 P99           H19    H    H         0.000     -8.890    3.548    1.886
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 P99      F26    n/a    C25    START
 P99      C25    F26    C24    .
 P99      C06    C25    O05    .
 P99      O05    C06    C04    .
 P99      C04    O05    C02    .
 P99      H04    C04    .      .
 P99      H04A   C04    .      .
 P99      C02    C04    N01    .
 P99      O03    C02    .      .
 P99      N01    C02    HN01   .
 P99      HN0A   N01    .      .
 P99      HN01   N01    .      .
 P99      C24    C25    C10    .
 P99      H24    C24    .      .
 P99      C10    C24    S11    .
 P99      C09    C10    C07    .
 P99      H09    C09    .      .
 P99      C07    C09    F08    .
 P99      F08    C07    .      .
 P99      S11    C10    C12    .
 P99      C12    S11    C13    .
 P99      H12    C12    .      .
 P99      H12A   C12    .      .
 P99      C13    C12    N14    .
 P99      H13    C13    .      .
 P99      H13A   C13    .      .
 P99      N14    C13    S15    .
 P99      HN14   N14    .      .
 P99      S15    N14    C18    .
 P99      O16    S15    .      .
 P99      O17    S15    .      .
 P99      C18    S15    C23    .
 P99      C23    C18    C22    .
 P99      H23    C23    .      .
 P99      C22    C23    C21    .
 P99      H22    C22    .      .
 P99      C21    C22    C20    .
 P99      H21    C21    .      .
 P99      C20    C21    C19    .
 P99      H20    C20    .      .
 P99      C19    C20    H19    .
 P99      H19    C19    .      END
 P99      C06    C07    .    ADD
 P99      C18    C19    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 P99      N01    C02       single      1.332    0.020
 P99      HN01   N01       single      1.010    0.020
 P99      HN0A   N01       single      1.010    0.020
 P99      O03    C02       double      1.220    0.020
 P99      C02    C04       single      1.510    0.020
 P99      C04    O05       single      1.426    0.020
 P99      H04    C04       single      1.092    0.020
 P99      H04A   C04       single      1.092    0.020
 P99      O05    C06       single      1.370    0.020
 P99      C06    C07       double      1.487    0.020
 P99      C06    C25       single      1.487    0.020
 P99      F08    C07       single      1.345    0.020
 P99      C07    C09       single      1.390    0.020
 P99      C09    C10       double      1.390    0.020
 P99      H09    C09       single      1.083    0.020
 P99      S11    C10       single      1.695    0.020
 P99      C10    C24       single      1.390    0.020
 P99      C12    S11       single      1.762    0.020
 P99      C13    C12       single      1.524    0.020
 P99      H12    C12       single      1.092    0.020
 P99      H12A   C12       single      1.092    0.020
 P99      N14    C13       single      1.450    0.020
 P99      H13    C13       single      1.092    0.020
 P99      H13A   C13       single      1.092    0.020
 P99      S15    N14       single      1.600    0.020
 P99      HN14   N14       single      1.010    0.020
 P99      O16    S15       double      1.436    0.020
 P99      O17    S15       double      1.436    0.020
 P99      C18    S15       single      1.595    0.020
 P99      C23    C18       double      1.390    0.020
 P99      C18    C19       single      1.390    0.020
 P99      C19    C20       double      1.390    0.020
 P99      H19    C19       single      1.083    0.020
 P99      C20    C21       single      1.390    0.020
 P99      H20    C20       single      1.083    0.020
 P99      C21    C22       double      1.390    0.020
 P99      H21    C21       single      1.083    0.020
 P99      C22    C23       single      1.390    0.020
 P99      H22    C22       single      1.083    0.020
 P99      H23    C23       single      1.083    0.020
 P99      C24    C25       double      1.390    0.020
 P99      H24    C24       single      1.083    0.020
 P99      C25    F26       single      1.345    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 P99      F26    C25    C06     120.000    3.000
 P99      F26    C25    C24     120.000    3.000
 P99      C06    C25    C24     120.000    3.000
 P99      C25    C06    O05     120.000    3.000
 P99      C25    C06    C07     120.000    3.000
 P99      O05    C06    C07     120.000    3.000
 P99      C06    O05    C04     120.000    3.000
 P99      O05    C04    H04     109.470    3.000
 P99      O05    C04    H04A    109.470    3.000
 P99      O05    C04    C02     109.470    3.000
 P99      H04    C04    H04A    107.900    3.000
 P99      H04    C04    C02     109.470    3.000
 P99      H04A   C04    C02     109.470    3.000
 P99      C04    C02    O03     120.500    3.000
 P99      C04    C02    N01     116.500    3.000
 P99      O03    C02    N01     123.000    3.000
 P99      C02    N01    HN0A    120.000    3.000
 P99      C02    N01    HN01    120.000    3.000
 P99      HN0A   N01    HN01    120.000    3.000
 P99      C25    C24    H24     120.000    3.000
 P99      C25    C24    C10     120.000    3.000
 P99      H24    C24    C10     120.000    3.000
 P99      C24    C10    C09     120.000    3.000
 P99      C24    C10    S11     120.000    3.000
 P99      C09    C10    S11     120.000    3.000
 P99      C10    C09    H09     120.000    3.000
 P99      C10    C09    C07     120.000    3.000
 P99      H09    C09    C07     120.000    3.000
 P99      C09    C07    F08     120.000    3.000
 P99      C09    C07    C06     120.000    3.000
 P99      F08    C07    C06     120.000    3.000
 P99      C10    S11    C12     103.001    3.000
 P99      S11    C12    H12     109.500    3.000
 P99      S11    C12    H12A    109.500    3.000
 P99      S11    C12    C13     109.500    3.000
 P99      H12    C12    H12A    107.900    3.000
 P99      H12    C12    C13     109.470    3.000
 P99      H12A   C12    C13     109.470    3.000
 P99      C12    C13    H13     109.470    3.000
 P99      C12    C13    H13A    109.470    3.000
 P99      C12    C13    N14     112.000    3.000
 P99      H13    C13    H13A    107.900    3.000
 P99      H13    C13    N14     109.470    3.000
 P99      H13A   C13    N14     109.470    3.000
 P99      C13    N14    HN14    118.500    3.000
 P99      C13    N14    S15     120.000    3.000
 P99      HN14   N14    S15     120.000    3.000
 P99      N14    S15    O16     109.500    3.000
 P99      N14    S15    O17     109.500    3.000
 P99      N14    S15    C18     109.500    3.000
 P99      O16    S15    O17     109.500    3.000
 P99      O16    S15    C18     109.500    3.000
 P99      O17    S15    C18     109.500    3.000
 P99      S15    C18    C23     120.000    3.000
 P99      S15    C18    C19     120.000    3.000
 P99      C23    C18    C19     120.000    3.000
 P99      C18    C23    H23     120.000    3.000
 P99      C18    C23    C22     120.000    3.000
 P99      H23    C23    C22     120.000    3.000
 P99      C23    C22    H22     120.000    3.000
 P99      C23    C22    C21     120.000    3.000
 P99      H22    C22    C21     120.000    3.000
 P99      C22    C21    H21     120.000    3.000
 P99      C22    C21    C20     120.000    3.000
 P99      H21    C21    C20     120.000    3.000
 P99      C21    C20    H20     120.000    3.000
 P99      C21    C20    C19     120.000    3.000
 P99      H20    C20    C19     120.000    3.000
 P99      C20    C19    H19     120.000    3.000
 P99      C20    C19    C18     120.000    3.000
 P99      H19    C19    C18     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 P99      CONST_1  F26    C25    C06    O05        0.000    0.000   0
 P99      CONST_2  C25    C06    C07    C09        0.000    0.000   0
 P99      var_1    C25    C06    O05    C04       90.011   20.000   1
 P99      var_2    C06    O05    C04    C02     -179.984   20.000   1
 P99      var_3    O05    C04    C02    N01     -179.998   20.000   3
 P99      CONST_3  C04    C02    N01    HN01       0.000    0.000   0
 P99      CONST_4  F26    C25    C24    C10      180.000    0.000   0
 P99      CONST_5  C25    C24    C10    S11      180.000    0.000   0
 P99      CONST_6  C24    C10    C09    C07        0.000    0.000   0
 P99      CONST_7  C10    C09    C07    F08      180.000    0.000   0
 P99      var_4    C24    C10    S11    C12        0.102   20.000   1
 P99      var_5    C10    S11    C12    C13      179.998   20.000   1
 P99      var_6    S11    C12    C13    N14      179.969   20.000   3
 P99      var_7    C12    C13    N14    S15      164.984   20.000   3
 P99      var_8    C13    N14    S15    C18       64.965   20.000   1
 P99      var_9    N14    S15    C18    C23      -90.273   20.000   1
 P99      CONST_8  S15    C18    C19    C20      180.000    0.000   0
 P99      CONST_9  S15    C18    C23    C22      180.000    0.000   0
 P99      CONST_10 C18    C23    C22    C21        0.000    0.000   0
 P99      CONST_11 C23    C22    C21    C20        0.000    0.000   0
 P99      CONST_12 C22    C21    C20    C19        0.000    0.000   0
 P99      CONST_13 C21    C20    C19    C18        0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 P99      chir_01  S15    N14    O16    O17       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 P99      plan-1    N01       0.020
 P99      plan-1    C02       0.020
 P99      plan-1    HN01      0.020
 P99      plan-1    HN0A      0.020
 P99      plan-2    C02       0.020
 P99      plan-2    N01       0.020
 P99      plan-2    O03       0.020
 P99      plan-2    C04       0.020
 P99      plan-2    HN0A      0.020
 P99      plan-2    HN01      0.020
 P99      plan-3    C06       0.020
 P99      plan-3    O05       0.020
 P99      plan-3    C07       0.020
 P99      plan-3    C25       0.020
 P99      plan-3    C09       0.020
 P99      plan-3    C10       0.020
 P99      plan-3    C24       0.020
 P99      plan-3    F08       0.020
 P99      plan-3    H09       0.020
 P99      plan-3    S11       0.020
 P99      plan-3    H24       0.020
 P99      plan-3    F26       0.020
 P99      plan-4    N14       0.020
 P99      plan-4    C13       0.020
 P99      plan-4    S15       0.020
 P99      plan-4    HN14      0.020
 P99      plan-5    C18       0.020
 P99      plan-5    S15       0.020
 P99      plan-5    C19       0.020
 P99      plan-5    C23       0.020
 P99      plan-5    C20       0.020
 P99      plan-5    C21       0.020
 P99      plan-5    C22       0.020
 P99      plan-5    H19       0.020
 P99      plan-5    H20       0.020
 P99      plan-5    H21       0.020
 P99      plan-5    H22       0.020
 P99      plan-5    H23       0.020
# ------------------------------------------------------