File: PT2.cif

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global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
PT2      PT2 '"[ethane-1,2-diaminato(2-)-kappa~2~N' non-polymer        33  19 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_PT2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 PT2           HN18   H    H         0.000     -2.176   -0.046   -2.579
 PT2           N18    N    NH1       0.000     -2.295   -0.095   -1.577
 PT2           C17    C    CH2       0.000     -3.534   -0.232   -0.694
 PT2           H117   H    H         0.000     -3.723   -1.306   -0.637
 PT2           H217   H    H         0.000     -4.337    0.248   -1.257
 PT2           C16    C    CH2       0.000     -3.478    0.355    0.722
 PT2           H116   H    H         0.000     -4.408    0.052    1.208
 PT2           H216   H    H         0.000     -3.472    1.440    0.596
 PT2           N15    N    NH1       0.000     -2.284   -0.068    1.588
 PT2           HN15   H    H         0.000     -2.186   -0.281    2.570
 PT2           PT     PT   PT        0.000     -0.937   -0.043   -0.002
 PT2           N10    N    NR6       1.000      0.385    1.550   -0.017
 PT2           C9     C    CR16      0.000      0.385    2.829   -0.031
 PT2           H9     H    H         0.000     -0.561    3.357   -0.039
 PT2           C8     C    CR16      0.000      1.573    3.561   -0.036
 PT2           H8     H    H         0.000      1.559    4.644   -0.048
 PT2           C14    C    CR66      0.000      1.523    0.761   -0.009
 PT2           C13    C    CR66      0.000      2.748    1.472   -0.009
 PT2           C7     C    CR16      0.000      2.755    2.875   -0.025
 PT2           H7     H    H         0.000      3.695    3.413   -0.029
 PT2           C6     C    CR16      0.000      3.977    0.771    0.007
 PT2           H6     H    H         0.000      4.905    1.329    0.012
 PT2           C11    C    CR66      0.000      1.566   -0.703    0.003
 PT2           N1     N    NR6       1.000      0.475   -1.556    0.009
 PT2           C12    C    CR66      0.000      2.829   -1.343    0.010
 PT2           C5     C    CR16      0.000      4.016   -0.572    0.016
 PT2           H5     H    H         0.000      4.975   -1.075    0.028
 PT2           C4     C    CR16      0.000      2.917   -2.744    0.014
 PT2           H4     H    H         0.000      3.886   -3.227    0.015
 PT2           C3     C    CR16      0.000      1.776   -3.496    0.017
 PT2           H3     H    H         0.000      1.824   -4.578    0.019
 PT2           C2     C    CR16      0.000      0.548   -2.834    0.017
 PT2           H2     H    H         0.000     -0.366   -3.415    0.024
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 PT2      HN18   n/a    N18    START
 PT2      N18    HN18   PT     .
 PT2      C17    N18    C16    .
 PT2      H117   C17    .      .
 PT2      H217   C17    .      .
 PT2      C16    C17    N15    .
 PT2      H116   C16    .      .
 PT2      H216   C16    .      .
 PT2      N15    C16    HN15   .
 PT2      HN15   N15    .      .
 PT2      PT     N18    N10    .
 PT2      N10    PT     C14    .
 PT2      C9     N10    C8     .
 PT2      H9     C9     .      .
 PT2      C8     C9     H8     .
 PT2      H8     C8     .      .
 PT2      C14    N10    C11    .
 PT2      C13    C14    C6     .
 PT2      C7     C13    H7     .
 PT2      H7     C7     .      .
 PT2      C6     C13    H6     .
 PT2      H6     C6     .      .
 PT2      C11    C14    C12    .
 PT2      N1     C11    .      .
 PT2      C12    C11    C4     .
 PT2      C5     C12    H5     .
 PT2      H5     C5     .      .
 PT2      C4     C12    C3     .
 PT2      H4     C4     .      .
 PT2      C3     C4     C2     .
 PT2      H3     C3     .      .
 PT2      C2     C3     H2     .
 PT2      H2     C2     .      END
 PT2      PT     N1     .    ADD
 PT2      PT     N15    .    ADD
 PT2      N1     C2     .    ADD
 PT2      C5     C6     .    ADD
 PT2      C7     C8     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 PT2      C2     C3        double      1.390    0.020
 PT2      C3     C4        single      1.390    0.020
 PT2      N1     C2        single      1.337    0.020
 PT2      C4     C12       double      1.390    0.020
 PT2      N15    C16       single      1.450    0.020
 PT2      PT     N15       single      2.025    0.020
 PT2      N1     C11       double      1.337    0.020
 PT2      PT     N1        single      2.025    0.020
 PT2      C16    C17       single      1.524    0.020
 PT2      C12    C11       single      1.490    0.020
 PT2      C5     C12       single      1.390    0.020
 PT2      C11    C14       single      1.490    0.020
 PT2      PT     N18       single      2.025    0.020
 PT2      N10    PT        single      2.025    0.020
 PT2      C5     C6        double      1.390    0.020
 PT2      C17    N18       single      1.450    0.020
 PT2      C14    N10       double      1.337    0.020
 PT2      C13    C14       single      1.490    0.020
 PT2      C9     N10       single      1.337    0.020
 PT2      C6     C13       single      1.390    0.020
 PT2      C7     C13       double      1.390    0.020
 PT2      C8     C9        double      1.390    0.020
 PT2      C7     C8        single      1.390    0.020
 PT2      H2     C2        single      1.083    0.020
 PT2      H3     C3        single      1.083    0.020
 PT2      H4     C4        single      1.083    0.020
 PT2      H5     C5        single      1.083    0.020
 PT2      H6     C6        single      1.083    0.020
 PT2      H7     C7        single      1.083    0.020
 PT2      H8     C8        single      1.083    0.020
 PT2      H9     C9        single      1.083    0.020
 PT2      HN15   N15       single      1.010    0.020
 PT2      H116   C16       single      1.092    0.020
 PT2      H216   C16       single      1.092    0.020
 PT2      H117   C17       single      1.092    0.020
 PT2      H217   C17       single      1.092    0.020
 PT2      N18    HN18      single      1.010    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 PT2      HN18   N18    C17     118.500    3.000
 PT2      HN18   N18    PT      120.000    3.000
 PT2      C17    N18    PT      120.000    3.000
 PT2      N18    C17    H117    109.470    3.000
 PT2      N18    C17    H217    109.470    3.000
 PT2      N18    C17    C16     112.000    3.000
 PT2      H117   C17    H217    107.900    3.000
 PT2      H117   C17    C16     109.470    3.000
 PT2      H217   C17    C16     109.470    3.000
 PT2      C17    C16    H116    109.470    3.000
 PT2      C17    C16    H216    109.470    3.000
 PT2      C17    C16    N15     112.000    3.000
 PT2      H116   C16    H216    107.900    3.000
 PT2      H116   C16    N15     109.470    3.000
 PT2      H216   C16    N15     109.470    3.000
 PT2      C16    N15    HN15    118.500    3.000
 PT2      C16    N15    PT      120.000    3.000
 PT2      HN15   N15    PT      120.000    3.000
 PT2      N18    PT     N10      90.000    3.000
 PT2      N18    PT     N1       90.000    3.000
 PT2      N18    PT     N15      90.000    3.000
 PT2      N1     PT     N15      90.000    3.000
 PT2      N10    PT     N1       90.000    3.000
 PT2      N10    PT     N15      90.000    3.000
 PT2      PT     N10    C9      120.000    3.000
 PT2      PT     N10    C14     120.000    3.000
 PT2      C9     N10    C14     120.000    3.000
 PT2      N10    C9     H9      120.000    3.000
 PT2      N10    C9     C8      120.000    3.000
 PT2      H9     C9     C8      120.000    3.000
 PT2      C9     C8     H8      120.000    3.000
 PT2      C9     C8     C7      120.000    3.000
 PT2      H8     C8     C7      120.000    3.000
 PT2      N10    C14    C13     120.000    3.000
 PT2      N10    C14    C11     120.000    3.000
 PT2      C13    C14    C11     120.000    3.000
 PT2      C14    C13    C7      120.000    3.000
 PT2      C14    C13    C6      120.000    3.000
 PT2      C7     C13    C6      120.000    3.000
 PT2      C13    C7     H7      120.000    3.000
 PT2      C13    C7     C8      120.000    3.000
 PT2      H7     C7     C8      120.000    3.000
 PT2      C13    C6     H6      120.000    3.000
 PT2      C13    C6     C5      120.000    3.000
 PT2      H6     C6     C5      120.000    3.000
 PT2      C14    C11    N1      120.000    3.000
 PT2      C14    C11    C12     120.000    3.000
 PT2      N1     C11    C12     120.000    3.000
 PT2      C11    N1     PT      120.000    3.000
 PT2      C11    N1     C2      120.000    3.000
 PT2      PT     N1     C2      120.000    3.000
 PT2      C11    C12    C5      120.000    3.000
 PT2      C11    C12    C4      120.000    3.000
 PT2      C5     C12    C4      120.000    3.000
 PT2      C12    C5     H5      120.000    3.000
 PT2      C12    C5     C6      120.000    3.000
 PT2      H5     C5     C6      120.000    3.000
 PT2      C12    C4     H4      120.000    3.000
 PT2      C12    C4     C3      120.000    3.000
 PT2      H4     C4     C3      120.000    3.000
 PT2      C4     C3     H3      120.000    3.000
 PT2      C4     C3     C2      120.000    3.000
 PT2      H3     C3     C2      120.000    3.000
 PT2      C3     C2     H2      120.000    3.000
 PT2      C3     C2     N1      120.000    3.000
 PT2      H2     C2     N1      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 PT2      var_1    HN18   N18    C17    C16      -87.038   20.000   3
 PT2      var_2    N18    C17    C16    N15      -51.850   20.000   3
 PT2      var_3    C17    C16    N15    PT        37.754   20.000   3
 PT2      var_4    HN18   N18    PT     N10      -12.862   20.000   1
 PT2      var_5    N18    PT     N1     C11      122.943   20.000   1
 PT2      var_6    N18    PT     N15    C16      -17.650   20.000   1
 PT2      var_7    N18    PT     N10    C14     -122.978   20.000   1
 PT2      CONST_1  PT     N10    C9     C8       180.000    0.000   0
 PT2      CONST_2  N10    C9     C8     C7         0.000    0.000   0
 PT2      CONST_3  PT     N10    C14    C11        0.000    0.000   0
 PT2      CONST_4  N10    C14    C13    C6       179.616    0.000   0
 PT2      CONST_5  C14    C13    C7     C8         0.000    0.000   0
 PT2      CONST_6  C13    C7     C8     C9         0.000    0.000   0
 PT2      CONST_7  C14    C13    C6     C5         0.000    0.000   0
 PT2      CONST_8  N10    C14    C11    C12     -179.998    0.000   0
 PT2      CONST_9  C14    C11    N1     PT         0.000    0.000   0
 PT2      CONST_10 C11    N1     C2     C3         0.000    0.000   0
 PT2      CONST_11 C14    C11    C12    C4      -179.643    0.000   0
 PT2      CONST_12 C11    C12    C5     C6         0.000    0.000   0
 PT2      CONST_13 C12    C5     C6     C13        0.000    0.000   0
 PT2      CONST_14 C11    C12    C4     C3         0.000    0.000   0
 PT2      CONST_15 C12    C4     C3     C2         0.000    0.000   0
 PT2      CONST_16 C4     C3     C2     N1         0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 PT2      plan-1    N1        0.020
 PT2      plan-1    PT        0.020
 PT2      plan-1    C2        0.020
 PT2      plan-1    C11       0.020
 PT2      plan-1    C3        0.020
 PT2      plan-1    C4        0.020
 PT2      plan-1    H2        0.020
 PT2      plan-1    H3        0.020
 PT2      plan-1    C12       0.020
 PT2      plan-1    H4        0.020
 PT2      plan-1    C5        0.020
 PT2      plan-1    C6        0.020
 PT2      plan-1    H5        0.020
 PT2      plan-1    C13       0.020
 PT2      plan-1    H6        0.020
 PT2      plan-1    C14       0.020
 PT2      plan-1    C7        0.020
 PT2      plan-1    N10       0.020
 PT2      plan-1    C8        0.020
 PT2      plan-1    C9        0.020
 PT2      plan-1    H7        0.020
 PT2      plan-1    H8        0.020
 PT2      plan-1    H9        0.020
 PT2      plan-2    N15       0.020
 PT2      plan-2    PT        0.020
 PT2      plan-2    C16       0.020
 PT2      plan-2    HN15      0.020
 PT2      plan-3    N18       0.020
 PT2      plan-3    PT        0.020
 PT2      plan-3    C17       0.020
 PT2      plan-3    HN18      0.020
# ------------------------------------------------------