File: 090.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (346 lines) | stat: -rw-r--r-- 15,681 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
090      090 'N-(2,3-DIHYDRO-7,8-DIMETHOXYIMIDAZO[' non-polymer        42  26 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_090
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 090           OAU    O    O         0.000      0.000    0.000    0.000
 090           CAO    C    C         0.000      0.453    0.902   -0.702
 090           CAP    C    CR6       0.000      1.894    1.210   -0.704
 090           CAV    C    CR16      0.000      2.818    0.222   -0.437
 090           HAV    H    H         0.000      2.495   -0.790   -0.224
 090           CAW    C    CR16      0.000      4.171    0.544   -0.447
 090           HAW    H    H         0.000      4.925   -0.207   -0.243
 090           CAX    C    CR16      0.000      4.524    1.854   -0.725
 090           HAX    H    H         0.000      5.577    2.106   -0.732
 090           NAR    N    NRD6      0.000      3.635    2.838   -0.988
 090           CAQ    C    CR16      0.000      2.329    2.487   -0.970
 090           HAQ    H    H         0.000      1.589    3.251   -1.175
 090           NAN    N    NH1       0.000     -0.336    1.733   -1.521
 090           HAN    H    H         0.000      0.165    2.435   -2.047
 090           CAM    C    CR6       0.000     -1.721    1.712   -1.701
 090           NAG    N    NR56      1.000     -2.384    2.661   -2.602
 090           CAH    C    CR15      0.000     -1.838    3.660   -3.374
 090           HAH    H    H         0.000     -0.788    3.914   -3.442
 090           CAB    C    CR15      0.000     -2.877    4.284   -4.051
 090           HAB    H    H         0.000     -2.784    5.113   -4.741
 090           NAA    N    NR15      0.000     -4.057    3.651   -3.682
 090           HAA    H    H         0.000     -5.017    3.878   -4.012
 090           CAF    C    CR56      0.000     -3.696    2.657   -2.785
 090           CAE    C    CR66      0.000     -4.490    1.708   -2.091
 090           CAK    C    CR66      0.000     -3.804    0.810   -1.231
 090           NAL    N    NRD6      0.000     -2.472    0.809   -1.040
 090           CAD    C    CR16      0.000     -5.890    1.659   -2.249
 090           HAD    H    H         0.000     -6.389    2.354   -2.913
 090           CAC    C    CR16      0.000     -6.626    0.711   -1.547
 090           HAC    H    H         0.000     -7.702    0.665   -1.660
 090           CAI    C    CR6       0.000     -5.972   -0.176   -0.699
 090           OAS    O    O2        0.000     -6.702   -1.103   -0.014
 090           CAY    C    CH3       0.000     -7.186   -0.723    1.272
 090           HAY3   H    H         0.000     -6.837   -1.411    1.997
 090           HAY2   H    H         0.000     -6.835    0.247    1.509
 090           HAY1   H    H         0.000     -8.245   -0.724    1.265
 090           CAJ    C    CR6       0.000     -4.581   -0.120   -0.549
 090           OAT    O    O2        0.000     -3.977   -1.014    0.295
 090           CAZ    C    CH3       0.000     -3.560   -2.250   -0.272
 090           HAZ3   H    H         0.000     -3.530   -2.161   -1.327
 090           HAZ2   H    H         0.000     -2.596   -2.496    0.089
 090           HAZ1   H    H         0.000     -4.244   -3.011   -0.001
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 090      OAU    n/a    CAO    START
 090      CAO    OAU    NAN    .
 090      CAP    CAO    CAV    .
 090      CAV    CAP    CAW    .
 090      HAV    CAV    .      .
 090      CAW    CAV    CAX    .
 090      HAW    CAW    .      .
 090      CAX    CAW    NAR    .
 090      HAX    CAX    .      .
 090      NAR    CAX    CAQ    .
 090      CAQ    NAR    HAQ    .
 090      HAQ    CAQ    .      .
 090      NAN    CAO    CAM    .
 090      HAN    NAN    .      .
 090      CAM    NAN    NAG    .
 090      NAG    CAM    CAH    .
 090      CAH    NAG    CAB    .
 090      HAH    CAH    .      .
 090      CAB    CAH    NAA    .
 090      HAB    CAB    .      .
 090      NAA    CAB    CAF    .
 090      HAA    NAA    .      .
 090      CAF    NAA    CAE    .
 090      CAE    CAF    CAD    .
 090      CAK    CAE    NAL    .
 090      NAL    CAK    .      .
 090      CAD    CAE    CAC    .
 090      HAD    CAD    .      .
 090      CAC    CAD    CAI    .
 090      HAC    CAC    .      .
 090      CAI    CAC    CAJ    .
 090      OAS    CAI    CAY    .
 090      CAY    OAS    HAY1   .
 090      HAY3   CAY    .      .
 090      HAY2   CAY    .      .
 090      HAY1   CAY    .      .
 090      CAJ    CAI    OAT    .
 090      OAT    CAJ    CAZ    .
 090      CAZ    OAT    HAZ1   .
 090      HAZ3   CAZ    .      .
 090      HAZ2   CAZ    .      .
 090      HAZ1   CAZ    .      END
 090      CAP    CAQ    .    ADD
 090      CAM    NAL    .    ADD
 090      CAK    CAJ    .    ADD
 090      CAF    NAG    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 090      CAO    OAU       double      1.220    0.020
 090      CAP    CAO       single      1.500    0.020
 090      NAN    CAO       single      1.330    0.020
 090      CAP    CAQ       single      1.390    0.020
 090      CAV    CAP       double      1.390    0.020
 090      CAQ    NAR       double      1.337    0.020
 090      HAQ    CAQ       single      1.083    0.020
 090      NAR    CAX       single      1.337    0.020
 090      CAX    CAW       double      1.390    0.020
 090      HAX    CAX       single      1.083    0.020
 090      CAW    CAV       single      1.390    0.020
 090      HAW    CAW       single      1.083    0.020
 090      HAV    CAV       single      1.083    0.020
 090      CAM    NAN       single      1.350    0.020
 090      HAN    NAN       single      1.010    0.020
 090      CAM    NAL       single      1.350    0.020
 090      NAG    CAM       double      1.337    0.020
 090      NAL    CAK       double      1.350    0.020
 090      CAK    CAJ       single      1.490    0.020
 090      CAK    CAE       single      1.490    0.020
 090      OAT    CAJ       single      1.370    0.020
 090      CAJ    CAI       double      1.487    0.020
 090      CAZ    OAT       single      1.426    0.020
 090      HAZ1   CAZ       single      1.059    0.020
 090      HAZ2   CAZ       single      1.059    0.020
 090      HAZ3   CAZ       single      1.059    0.020
 090      CAE    CAF       double      1.390    0.020
 090      CAD    CAE       single      1.390    0.020
 090      CAF    NAG       single      1.337    0.020
 090      CAF    NAA       single      1.340    0.020
 090      CAH    NAG       single      1.337    0.020
 090      CAB    CAH       double      1.380    0.020
 090      HAH    CAH       single      1.083    0.020
 090      NAA    CAB       single      1.350    0.020
 090      HAB    CAB       single      1.083    0.020
 090      HAA    NAA       single      1.040    0.020
 090      CAC    CAD       double      1.390    0.020
 090      HAD    CAD       single      1.083    0.020
 090      CAI    CAC       single      1.390    0.020
 090      HAC    CAC       single      1.083    0.020
 090      OAS    CAI       single      1.370    0.020
 090      CAY    OAS       single      1.426    0.020
 090      HAY1   CAY       single      1.059    0.020
 090      HAY2   CAY       single      1.059    0.020
 090      HAY3   CAY       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 090      OAU    CAO    CAP     120.500    3.000
 090      OAU    CAO    NAN     123.000    3.000
 090      CAP    CAO    NAN     120.000    3.000
 090      CAO    CAP    CAV     120.000    3.000
 090      CAO    CAP    CAQ     120.000    3.000
 090      CAV    CAP    CAQ     120.000    3.000
 090      CAP    CAV    HAV     120.000    3.000
 090      CAP    CAV    CAW     120.000    3.000
 090      HAV    CAV    CAW     120.000    3.000
 090      CAV    CAW    HAW     120.000    3.000
 090      CAV    CAW    CAX     120.000    3.000
 090      HAW    CAW    CAX     120.000    3.000
 090      CAW    CAX    HAX     120.000    3.000
 090      CAW    CAX    NAR     120.000    3.000
 090      HAX    CAX    NAR     120.000    3.000
 090      CAX    NAR    CAQ     120.000    3.000
 090      NAR    CAQ    HAQ     120.000    3.000
 090      NAR    CAQ    CAP     120.000    3.000
 090      HAQ    CAQ    CAP     120.000    3.000
 090      CAO    NAN    HAN     120.000    3.000
 090      CAO    NAN    CAM     120.000    3.000
 090      HAN    NAN    CAM     120.000    3.000
 090      NAN    CAM    NAG     120.000    3.000
 090      NAN    CAM    NAL     120.000    3.000
 090      NAG    CAM    NAL     120.000    3.000
 090      CAM    NAG    CAH     132.000    3.000
 090      CAM    NAG    CAF     120.000    3.000
 090      CAH    NAG    CAF     108.000    3.000
 090      NAG    CAH    HAH     108.000    3.000
 090      NAG    CAH    CAB     108.000    3.000
 090      HAH    CAH    CAB     126.000    3.000
 090      CAH    CAB    HAB     126.000    3.000
 090      CAH    CAB    NAA     108.000    3.000
 090      HAB    CAB    NAA     126.000    3.000
 090      CAB    NAA    HAA     126.000    3.000
 090      CAB    NAA    CAF     108.000    3.000
 090      HAA    NAA    CAF     126.000    3.000
 090      NAA    CAF    CAE     120.000    3.000
 090      NAA    CAF    NAG     108.000    3.000
 090      CAE    CAF    NAG     120.000    3.000
 090      CAF    CAE    CAK     120.000    3.000
 090      CAF    CAE    CAD     120.000    3.000
 090      CAK    CAE    CAD     120.000    3.000
 090      CAE    CAK    NAL     120.000    3.000
 090      CAE    CAK    CAJ     120.000    3.000
 090      NAL    CAK    CAJ     120.000    3.000
 090      CAK    NAL    CAM     120.000    3.000
 090      CAE    CAD    HAD     120.000    3.000
 090      CAE    CAD    CAC     120.000    3.000
 090      HAD    CAD    CAC     120.000    3.000
 090      CAD    CAC    HAC     120.000    3.000
 090      CAD    CAC    CAI     120.000    3.000
 090      HAC    CAC    CAI     120.000    3.000
 090      CAC    CAI    OAS     120.000    3.000
 090      CAC    CAI    CAJ     120.000    3.000
 090      OAS    CAI    CAJ     120.000    3.000
 090      CAI    OAS    CAY     120.000    3.000
 090      OAS    CAY    HAY3    109.470    3.000
 090      OAS    CAY    HAY2    109.470    3.000
 090      OAS    CAY    HAY1    109.470    3.000
 090      HAY3   CAY    HAY2    109.470    3.000
 090      HAY3   CAY    HAY1    109.470    3.000
 090      HAY2   CAY    HAY1    109.470    3.000
 090      CAI    CAJ    OAT     120.000    3.000
 090      CAI    CAJ    CAK     120.000    3.000
 090      OAT    CAJ    CAK     120.000    3.000
 090      CAJ    OAT    CAZ     120.000    3.000
 090      OAT    CAZ    HAZ3    109.470    3.000
 090      OAT    CAZ    HAZ2    109.470    3.000
 090      OAT    CAZ    HAZ1    109.470    3.000
 090      HAZ3   CAZ    HAZ2    109.470    3.000
 090      HAZ3   CAZ    HAZ1    109.470    3.000
 090      HAZ2   CAZ    HAZ1    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 090      var_1    OAU    CAO    CAP    CAV       28.757   20.000   1
 090      CONST_1  CAO    CAP    CAQ    NAR      180.000    0.000   0
 090      CONST_2  CAO    CAP    CAV    CAW      180.000    0.000   0
 090      CONST_3  CAP    CAV    CAW    CAX        0.000    0.000   0
 090      CONST_4  CAV    CAW    CAX    NAR        0.000    0.000   0
 090      CONST_5  CAW    CAX    NAR    CAQ        0.000    0.000   0
 090      CONST_6  CAX    NAR    CAQ    CAP        0.000    0.000   0
 090      CONST_7  OAU    CAO    NAN    CAM        0.000    0.000   0
 090      var_2    CAO    NAN    CAM    NAG      179.968   20.000   1
 090      CONST_8  NAN    CAM    NAL    CAK      180.000    0.000   0
 090      CONST_9  NAN    CAM    NAG    CAH        0.000    0.000   0
 090      CONST_10 CAM    NAG    CAH    CAB      180.000    0.000   0
 090      CONST_11 NAG    CAH    CAB    NAA        0.000    0.000   0
 090      CONST_12 CAH    CAB    NAA    CAF        0.000    0.000   0
 090      CONST_13 CAB    NAA    CAF    CAE      180.000    0.000   0
 090      CONST_14 NAA    CAF    NAG    CAM      180.000    0.000   0
 090      CONST_15 NAA    CAF    CAE    CAD        0.000    0.000   0
 090      CONST_16 CAF    CAE    CAK    NAL        0.000    0.000   0
 090      CONST_17 CAE    CAK    CAJ    CAI        0.000    0.000   0
 090      CONST_18 CAE    CAK    NAL    CAM        0.000    0.000   0
 090      CONST_19 CAF    CAE    CAD    CAC      180.000    0.000   0
 090      CONST_20 CAE    CAD    CAC    CAI        0.000    0.000   0
 090      CONST_21 CAD    CAC    CAI    CAJ        0.000    0.000   0
 090      var_3    CAC    CAI    OAS    CAY      -89.969   20.000   1
 090      var_4    CAI    OAS    CAY    HAY1     117.008   20.000   1
 090      CONST_22 CAC    CAI    CAJ    OAT      180.000    0.000   0
 090      var_5    CAI    CAJ    OAT    CAZ       89.918   20.000   1
 090      var_6    CAJ    OAT    CAZ    HAZ1    -103.210   20.000   1
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 090      plan-1    CAO       0.020
 090      plan-1    OAU       0.020
 090      plan-1    CAP       0.020
 090      plan-1    NAN       0.020
 090      plan-1    HAN       0.020
 090      plan-2    CAP       0.020
 090      plan-2    CAO       0.020
 090      plan-2    CAQ       0.020
 090      plan-2    CAV       0.020
 090      plan-2    NAR       0.020
 090      plan-2    CAX       0.020
 090      plan-2    CAW       0.020
 090      plan-2    HAQ       0.020
 090      plan-2    HAX       0.020
 090      plan-2    HAW       0.020
 090      plan-2    HAV       0.020
 090      plan-3    NAN       0.020
 090      plan-3    CAO       0.020
 090      plan-3    CAM       0.020
 090      plan-3    HAN       0.020
 090      plan-4    CAM       0.020
 090      plan-4    NAN       0.020
 090      plan-4    NAL       0.020
 090      plan-4    NAG       0.020
 090      plan-4    CAK       0.020
 090      plan-4    CAJ       0.020
 090      plan-4    CAE       0.020
 090      plan-4    CAD       0.020
 090      plan-4    CAC       0.020
 090      plan-4    CAI       0.020
 090      plan-4    OAT       0.020
 090      plan-4    CAF       0.020
 090      plan-4    NAA       0.020
 090      plan-4    CAH       0.020
 090      plan-4    CAB       0.020
 090      plan-4    HAH       0.020
 090      plan-4    HAB       0.020
 090      plan-4    HAA       0.020
 090      plan-4    HAD       0.020
 090      plan-4    HAC       0.020
 090      plan-4    OAS       0.020
 090      plan-4    HAN       0.020
# ------------------------------------------------------