File: 296.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (234 lines) | stat: -rw-r--r-- 9,796 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
296      296 '(3R)-3-amino-2,2-difluoro-3-(4-metho' non-polymer        26  16 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_296
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 296           F2     F    F         0.000      0.000    0.000    0.000
 296           C11    C    CT        0.000     -1.184   -0.730    0.155
 296           F1     F    F         0.000     -1.579   -1.245   -1.084
 296           C12    C    C         0.000     -0.953   -1.864    1.121
 296           O14    O    OC       -0.500      0.153   -2.448    1.145
 296           O13    O    OC       -0.500     -1.866   -2.221    1.897
 296           C9     C    CH1       0.000     -2.281    0.188    0.700
 296           H9     H    H         0.000     -1.970    0.593    1.673
 296           N10    N    NH2       0.000     -3.524   -0.579    0.863
 296           HN1A   H    H         0.000     -3.570   -1.548    0.568
 296           HN10   H    H         0.000     -4.343   -0.144    1.271
 296           C8     C    CR6       0.000     -2.512    1.322   -0.265
 296           C5     C    CR16      0.000     -3.283    1.119   -1.396
 296           H5     H    H         0.000     -3.718    0.146   -1.587
 296           C4     C    CR16      0.000     -3.498    2.157   -2.281
 296           H4     H    H         0.000     -4.102    1.999   -3.166
 296           C7     C    CR16      0.000     -1.950    2.561   -0.022
 296           H7     H    H         0.000     -1.343    2.715    0.862
 296           C6     C    CR16      0.000     -2.162    3.602   -0.904
 296           H6     H    H         0.000     -1.721    4.572   -0.712
 296           C3     C    CR6       0.000     -2.938    3.403   -2.036
 296           O2     O    O2        0.000     -3.148    4.426   -2.906
 296           C1     C    CH3       0.000     -2.542    5.681   -2.590
 296           H1B    H    H         0.000     -1.491    5.564   -2.539
 296           H1A    H    H         0.000     -2.781    6.388   -3.342
 296           H1     H    H         0.000     -2.905    6.024   -1.656
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 296      F2     n/a    C11    START
 296      C11    F2     C9     .
 296      F1     C11    .      .
 296      C12    C11    O13    .
 296      O14    C12    .      .
 296      O13    C12    .      .
 296      C9     C11    C8     .
 296      H9     C9     .      .
 296      N10    C9     HN10   .
 296      HN1A   N10    .      .
 296      HN10   N10    .      .
 296      C8     C9     C7     .
 296      C5     C8     C4     .
 296      H5     C5     .      .
 296      C4     C5     H4     .
 296      H4     C4     .      .
 296      C7     C8     C6     .
 296      H7     C7     .      .
 296      C6     C7     C3     .
 296      H6     C6     .      .
 296      C3     C6     O2     .
 296      O2     C3     C1     .
 296      C1     O2     H1     .
 296      H1B    C1     .      .
 296      H1A    C1     .      .
 296      H1     C1     .      END
 296      C3     C4     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 296      C1     O2        single      1.426    0.020
 296      H1     C1        single      1.059    0.020
 296      H1A    C1        single      1.059    0.020
 296      H1B    C1        single      1.059    0.020
 296      O2     C3        single      1.370    0.020
 296      C3     C6        double      1.390    0.020
 296      C3     C4        single      1.390    0.020
 296      C4     C5        double      1.390    0.020
 296      H4     C4        single      1.083    0.020
 296      C5     C8        single      1.390    0.020
 296      H5     C5        single      1.083    0.020
 296      C6     C7        single      1.390    0.020
 296      H6     C6        single      1.083    0.020
 296      C7     C8        double      1.390    0.020
 296      H7     C7        single      1.083    0.020
 296      C8     C9        single      1.480    0.020
 296      N10    C9        single      1.450    0.020
 296      C9     C11       single      1.524    0.020
 296      H9     C9        single      1.099    0.020
 296      HN10   N10       single      1.010    0.020
 296      HN1A   N10       single      1.010    0.020
 296      F1     C11       single      1.320    0.020
 296      C12    C11       single      1.507    0.020
 296      C11    F2        single      1.320    0.020
 296      O13    C12       deloc       1.250    0.020
 296      O14    C12       deloc       1.250    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 296      F2     C11    F1      109.470    3.000
 296      F2     C11    C12     109.470    3.000
 296      F2     C11    C9      109.470    3.000
 296      F1     C11    C12     109.470    3.000
 296      F1     C11    C9      109.470    3.000
 296      C12    C11    C9      109.470    3.000
 296      C11    C12    O14     118.500    3.000
 296      C11    C12    O13     118.500    3.000
 296      O14    C12    O13     123.000    3.000
 296      C11    C9     H9      108.340    3.000
 296      C11    C9     N10     109.500    3.000
 296      C11    C9     C8      109.470    3.000
 296      H9     C9     N10     109.470    3.000
 296      H9     C9     C8      109.470    3.000
 296      N10    C9     C8      109.470    3.000
 296      C9     N10    HN1A    120.000    3.000
 296      C9     N10    HN10    120.000    3.000
 296      HN1A   N10    HN10    120.000    3.000
 296      C9     C8     C5      120.000    3.000
 296      C9     C8     C7      120.000    3.000
 296      C5     C8     C7      120.000    3.000
 296      C8     C5     H5      120.000    3.000
 296      C8     C5     C4      120.000    3.000
 296      H5     C5     C4      120.000    3.000
 296      C5     C4     H4      120.000    3.000
 296      C5     C4     C3      120.000    3.000
 296      H4     C4     C3      120.000    3.000
 296      C8     C7     H7      120.000    3.000
 296      C8     C7     C6      120.000    3.000
 296      H7     C7     C6      120.000    3.000
 296      C7     C6     H6      120.000    3.000
 296      C7     C6     C3      120.000    3.000
 296      H6     C6     C3      120.000    3.000
 296      C6     C3     O2      120.000    3.000
 296      C6     C3     C4      120.000    3.000
 296      O2     C3     C4      120.000    3.000
 296      C3     O2     C1      120.000    3.000
 296      O2     C1     H1B     109.470    3.000
 296      O2     C1     H1A     109.470    3.000
 296      O2     C1     H1      109.470    3.000
 296      H1B    C1     H1A     109.470    3.000
 296      H1B    C1     H1      109.470    3.000
 296      H1A    C1     H1      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 296      var_1    F2     C11    C12    O13      145.004   20.000   1
 296      var_2    F2     C11    C9     C8        60.013   20.000   1
 296      var_3    C11    C9     N10    HN10     176.090   20.000   1
 296      var_4    C11    C9     C8     C7      -100.022   20.000   1
 296      CONST_1  C9     C8     C5     C4       180.000    0.000   0
 296      CONST_2  C8     C5     C4     C3         0.000    0.000   0
 296      CONST_3  C9     C8     C7     C6       180.000    0.000   0
 296      CONST_4  C8     C7     C6     C3         0.000    0.000   0
 296      CONST_5  C7     C6     C3     O2       180.000    0.000   0
 296      CONST_6  C6     C3     C4     C5         0.000    0.000   0
 296      var_5    C6     C3     O2     C1        -0.254   20.000   1
 296      var_6    C3     O2     C1     H1       -59.965   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 296      chir_01  C9     C8     N10    C11       negativ
 296      chir_02  C11    C9     C12    F1        negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 296      plan-1    C3        0.020
 296      plan-1    O2        0.020
 296      plan-1    C4        0.020
 296      plan-1    C6        0.020
 296      plan-1    C5        0.020
 296      plan-1    C7        0.020
 296      plan-1    C8        0.020
 296      plan-1    H4        0.020
 296      plan-1    H5        0.020
 296      plan-1    H6        0.020
 296      plan-1    H7        0.020
 296      plan-1    C9        0.020
 296      plan-2    N10       0.020
 296      plan-2    C9        0.020
 296      plan-2    HN10      0.020
 296      plan-2    HN1A      0.020
 296      plan-3    C12       0.020
 296      plan-3    C11       0.020
 296      plan-3    O13       0.020
 296      plan-3    O14       0.020
# ------------------------------------------------------