File: 2FX.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (198 lines) | stat: -rw-r--r-- 8,150 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
2FX      2FX '1-benzothiophen-2-ylacetic acid     ' non-polymer        20  13 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_2FX
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 2FX           O3     O    OC       -0.500      0.000    0.000    0.000
 2FX           C2     C    C         0.000     -0.309    0.069    1.210
 2FX           O1     O    OC       -0.500      0.586    0.152    2.081
 2FX           C13    C    CH2       0.000     -1.759    0.052    1.619
 2FX           H13    H    H         0.000     -1.996    0.973    2.156
 2FX           H13A   H    H         0.000     -1.943   -0.805    2.271
 2FX           C4     C    CR5       0.000     -2.626   -0.053    0.392
 2FX           S12    S    S2        0.000     -3.244    1.323   -0.503
 2FX           C11    C    CR56      0.000     -4.068    0.287   -1.661
 2FX           C6     C    CR56      0.000     -3.854   -1.054   -1.328
 2FX           C5     C    CR15      0.000     -3.022   -1.191   -0.144
 2FX           H5     H    H         0.000     -2.748   -2.155    0.266
 2FX           C10    C    CR16      0.000     -4.848    0.610   -2.775
 2FX           H10    H    H         0.000     -5.015    1.648   -3.035
 2FX           C9     C    CR16      0.000     -5.404   -0.388   -3.541
 2FX           H9     H    H         0.000     -6.008   -0.133   -4.404
 2FX           C8     C    CR16      0.000     -5.194   -1.720   -3.213
 2FX           H8     H    H         0.000     -5.637   -2.499   -3.821
 2FX           C7     C    CR16      0.000     -4.437   -2.056   -2.133
 2FX           H7     H    H         0.000     -4.281   -3.100   -1.889
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 2FX      O3     n/a    C2     START
 2FX      C2     O3     C13    .
 2FX      O1     C2     .      .
 2FX      C13    C2     C4     .
 2FX      H13    C13    .      .
 2FX      H13A   C13    .      .
 2FX      C4     C13    S12    .
 2FX      S12    C4     C11    .
 2FX      C11    S12    C10    .
 2FX      C6     C11    C5     .
 2FX      C5     C6     H5     .
 2FX      H5     C5     .      .
 2FX      C10    C11    C9     .
 2FX      H10    C10    .      .
 2FX      C9     C10    C8     .
 2FX      H9     C9     .      .
 2FX      C8     C9     C7     .
 2FX      H8     C8     .      .
 2FX      C7     C8     H7     .
 2FX      H7     C7     .      END
 2FX      C4     C5     .    ADD
 2FX      C6     C7     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 2FX      O1     C2        deloc       1.250    0.020
 2FX      C13    C2        single      1.510    0.020
 2FX      C2     O3        deloc       1.250    0.020
 2FX      S12    C4        single      1.745    0.020
 2FX      C4     C5        double      1.387    0.020
 2FX      C4     C13       single      1.510    0.020
 2FX      C5     C6        single      1.440    0.020
 2FX      H5     C5        single      1.083    0.020
 2FX      C6     C7        double      1.390    0.020
 2FX      C6     C11       single      1.490    0.020
 2FX      C7     C8        single      1.390    0.020
 2FX      H7     C7        single      1.083    0.020
 2FX      C8     C9        double      1.390    0.020
 2FX      H8     C8        single      1.083    0.020
 2FX      C9     C10       single      1.390    0.020
 2FX      H9     C9        single      1.083    0.020
 2FX      C10    C11       double      1.390    0.020
 2FX      H10    C10       single      1.083    0.020
 2FX      C11    S12       single      1.695    0.020
 2FX      H13    C13       single      1.092    0.020
 2FX      H13A   C13       single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 2FX      O3     C2     O1      123.000    3.000
 2FX      O3     C2     C13     118.500    3.000
 2FX      O1     C2     C13     118.500    3.000
 2FX      C2     C13    H13     109.470    3.000
 2FX      C2     C13    H13A    109.470    3.000
 2FX      C2     C13    C4      109.500    3.000
 2FX      H13    C13    H13A    107.900    3.000
 2FX      H13    C13    C4      109.470    3.000
 2FX      H13A   C13    C4      109.470    3.000
 2FX      C13    C4     S12     108.000    3.000
 2FX      C13    C4     C5      126.000    3.000
 2FX      S12    C4     C5      108.000    3.000
 2FX      C4     S12    C11      92.194    3.000
 2FX      S12    C11    C6      120.000    3.000
 2FX      S12    C11    C10     120.000    3.000
 2FX      C6     C11    C10     120.000    3.000
 2FX      C11    C6     C5      120.000    3.000
 2FX      C11    C6     C7      120.000    3.000
 2FX      C5     C6     C7      126.000    3.000
 2FX      C6     C5     H5      108.000    3.000
 2FX      C6     C5     C4      108.000    3.000
 2FX      H5     C5     C4      126.000    3.000
 2FX      C11    C10    H10     120.000    3.000
 2FX      C11    C10    C9      120.000    3.000
 2FX      H10    C10    C9      120.000    3.000
 2FX      C10    C9     H9      120.000    3.000
 2FX      C10    C9     C8      120.000    3.000
 2FX      H9     C9     C8      120.000    3.000
 2FX      C9     C8     H8      120.000    3.000
 2FX      C9     C8     C7      120.000    3.000
 2FX      H8     C8     C7      120.000    3.000
 2FX      C8     C7     H7      120.000    3.000
 2FX      C8     C7     C6      120.000    3.000
 2FX      H7     C7     C6      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 2FX      var_1    O3     C2     C13    C4        -0.008   20.000   3
 2FX      var_2    C2     C13    C4     S12      -90.277   20.000   2
 2FX      CONST_1  C13    C4     C5     C6       180.000    0.000   0
 2FX      CONST_2  C13    C4     S12    C11      180.000    0.000   0
 2FX      CONST_3  C4     S12    C11    C10      180.000    0.000   0
 2FX      CONST_4  S12    C11    C6     C5         0.000    0.000   0
 2FX      CONST_5  C11    C6     C7     C8         0.000    0.000   0
 2FX      CONST_6  C11    C6     C5     C4         0.000    0.000   0
 2FX      CONST_7  S12    C11    C10    C9       180.000    0.000   0
 2FX      CONST_8  C11    C10    C9     C8         0.000    0.000   0
 2FX      CONST_9  C10    C9     C8     C7         0.000    0.000   0
 2FX      CONST_10 C9     C8     C7     C6         0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 2FX      plan-1    C2        0.020
 2FX      plan-1    O1        0.020
 2FX      plan-1    O3        0.020
 2FX      plan-1    C13       0.020
 2FX      plan-2    C4        0.020
 2FX      plan-2    C5        0.020
 2FX      plan-2    S12       0.020
 2FX      plan-2    C13       0.020
 2FX      plan-2    C6        0.020
 2FX      plan-2    H5        0.020
 2FX      plan-2    C7        0.020
 2FX      plan-2    C11       0.020
 2FX      plan-2    C8        0.020
 2FX      plan-2    C9        0.020
 2FX      plan-2    C10       0.020
 2FX      plan-2    H7        0.020
 2FX      plan-2    H8        0.020
 2FX      plan-2    H9        0.020
 2FX      plan-2    H10       0.020
# ------------------------------------------------------