File: 320.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (387 lines) | stat: -rw-r--r-- 17,571 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
320      320 '2-(4-fluorophenyl)-N-{[3-fluoro-4-(1' non-polymer        47  31 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_320
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 320           F17    F    F         0.000      0.000    0.000    0.000
 320           C16    C    CR6       0.000     -1.206   -0.514   -0.327
 320           C15    C    CR16      0.000     -2.361    0.060    0.172
 320           H15    H    H         0.000     -2.300    0.922    0.825
 320           C11    C    CR6       0.000     -1.286   -1.620   -1.164
 320           O10    O    O2        0.000     -0.151   -2.185   -1.655
 320           C6     C    CR6       0.000      0.471   -3.125   -0.900
 320           C1     C    CR56      0.000      1.582   -3.828   -1.390
 320           C7     C    CR15      0.000      2.330   -3.809   -2.648
 320           H7     H    H         0.000      2.125   -3.188   -3.511
 320           C8     C    CR15      0.000      3.317   -4.709   -2.526
 320           H8     H    H         0.000      4.057   -4.929   -3.286
 320           N9     N    NR15      0.000      3.251   -5.310   -1.296
 320           HN9    H    H         0.000      3.899   -6.050   -0.958
 320           C2     C    CR56      0.000      2.203   -4.791   -0.576
 320           N3     N    NRD6      0.000      1.729   -5.034    0.641
 320           C4     C    CR16      0.000      0.685   -4.391    1.121
 320           H4     H    H         0.000      0.334   -4.624    2.119
 320           C5     C    CR16      0.000      0.024   -3.425    0.381
 320           H5     H    H         0.000     -0.832   -2.909    0.796
 320           C12    C    CR16      0.000     -2.524   -2.152   -1.495
 320           H12    H    H         0.000     -2.585   -3.017   -2.143
 320           C13    C    CR16      0.000     -3.678   -1.579   -0.997
 320           H13    H    H         0.000     -4.644   -1.995   -1.255
 320           C14    C    CR6       0.000     -3.599   -0.470   -0.165
 320           N18    N    NH1       0.000     -4.770    0.110    0.340
 320           HN18   H    H         0.000     -5.562   -0.471    0.575
 320           C19    C    C         0.000     -4.840    1.446    0.512
 320           O24    O    O         0.000     -3.865    2.139    0.297
 320           N20    N    NH1       0.000     -5.992    2.013    0.923
 320           HN20   H    H         0.000     -6.802    1.437    1.102
 320           C21    C    C         0.000     -6.062    3.348    1.095
 320           O25    O    O         0.000     -5.090    4.039    0.879
 320           C22    C    CH2       0.000     -7.350    3.982    1.553
 320           H22    H    H         0.000     -7.629    3.574    2.527
 320           H22A   H    H         0.000     -8.139    3.766    0.829
 320           C23    C    CR6       0.000     -7.163    5.473    1.666
 320           C30    C    CR16      0.000     -7.421    6.286    0.577
 320           H30    H    H         0.000     -7.756    5.850   -0.356
 320           C29    C    CR16      0.000     -7.251    7.653    0.679
 320           H29    H    H         0.000     -7.453    8.289   -0.174
 320           C26    C    CR16      0.000     -6.730    6.027    2.855
 320           H26    H    H         0.000     -6.523    5.390    3.706
 320           C27    C    CR16      0.000     -6.560    7.394    2.960
 320           H27    H    H         0.000     -6.221    7.828    3.892
 320           C28    C    CR6       0.000     -6.823    8.210    1.871
 320           F31    F    F         0.000     -6.656    9.546    1.973
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 320      F17    n/a    C16    START
 320      C16    F17    C11    .
 320      C15    C16    H15    .
 320      H15    C15    .      .
 320      C11    C16    C12    .
 320      O10    C11    C6     .
 320      C6     O10    C1     .
 320      C1     C6     C7     .
 320      C7     C1     C8     .
 320      H7     C7     .      .
 320      C8     C7     N9     .
 320      H8     C8     .      .
 320      N9     C8     C2     .
 320      HN9    N9     .      .
 320      C2     N9     N3     .
 320      N3     C2     C4     .
 320      C4     N3     C5     .
 320      H4     C4     .      .
 320      C5     C4     H5     .
 320      H5     C5     .      .
 320      C12    C11    C13    .
 320      H12    C12    .      .
 320      C13    C12    C14    .
 320      H13    C13    .      .
 320      C14    C13    N18    .
 320      N18    C14    C19    .
 320      HN18   N18    .      .
 320      C19    N18    N20    .
 320      O24    C19    .      .
 320      N20    C19    C21    .
 320      HN20   N20    .      .
 320      C21    N20    C22    .
 320      O25    C21    .      .
 320      C22    C21    C23    .
 320      H22    C22    .      .
 320      H22A   C22    .      .
 320      C23    C22    C26    .
 320      C30    C23    C29    .
 320      H30    C30    .      .
 320      C29    C30    H29    .
 320      H29    C29    .      .
 320      C26    C23    C27    .
 320      H26    C26    .      .
 320      C27    C26    C28    .
 320      H27    C27    .      .
 320      C28    C27    F31    .
 320      F31    C28    .      END
 320      C28    C29    .    ADD
 320      C14    C15    .    ADD
 320      C6     C5     .    ADD
 320      C2     C1     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 320      F31    C28       single      1.345    0.020
 320      C28    C29       double      1.390    0.020
 320      C28    C27       single      1.390    0.020
 320      C29    C30       single      1.390    0.020
 320      C30    C23       double      1.390    0.020
 320      C27    C26       double      1.390    0.020
 320      C26    C23       single      1.390    0.020
 320      C23    C22       single      1.511    0.020
 320      C22    C21       single      1.510    0.020
 320      O25    C21       double      1.220    0.020
 320      C21    N20       single      1.330    0.020
 320      N20    C19       single      1.330    0.020
 320      O24    C19       double      1.220    0.020
 320      C19    N18       single      1.330    0.020
 320      N18    C14       single      1.350    0.020
 320      C14    C15       double      1.390    0.020
 320      C14    C13       single      1.390    0.020
 320      C15    C16       single      1.390    0.020
 320      C16    F17       single      1.345    0.020
 320      C11    C16       double      1.487    0.020
 320      C13    C12       double      1.390    0.020
 320      C12    C11       single      1.390    0.020
 320      O10    C11       single      1.370    0.020
 320      C6     O10       single      1.370    0.020
 320      C6     C5        double      1.390    0.020
 320      C1     C6        single      1.490    0.020
 320      C5     C4        single      1.390    0.020
 320      C4     N3        double      1.337    0.020
 320      N3     C2        single      1.355    0.020
 320      C2     C1        double      1.490    0.020
 320      C2     N9        single      1.340    0.020
 320      C7     C1        single      1.440    0.020
 320      N9     C8        single      1.350    0.020
 320      C8     C7        double      1.380    0.020
 320      H29    C29       single      1.083    0.020
 320      H30    C30       single      1.083    0.020
 320      H27    C27       single      1.083    0.020
 320      H26    C26       single      1.083    0.020
 320      H22    C22       single      1.092    0.020
 320      H22A   C22       single      1.092    0.020
 320      HN20   N20       single      1.010    0.020
 320      HN18   N18       single      1.010    0.020
 320      H15    C15       single      1.083    0.020
 320      H13    C13       single      1.083    0.020
 320      H12    C12       single      1.083    0.020
 320      H5     C5        single      1.083    0.020
 320      H4     C4        single      1.083    0.020
 320      HN9    N9        single      1.040    0.020
 320      H8     C8        single      1.083    0.020
 320      H7     C7        single      1.083    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 320      F17    C16    C15     120.000    3.000
 320      F17    C16    C11     120.000    3.000
 320      C15    C16    C11     120.000    3.000
 320      C16    C15    H15     120.000    3.000
 320      C16    C15    C14     120.000    3.000
 320      H15    C15    C14     120.000    3.000
 320      C16    C11    O10     120.000    3.000
 320      C16    C11    C12     120.000    3.000
 320      O10    C11    C12     120.000    3.000
 320      C11    O10    C6      120.000    3.000
 320      O10    C6     C1      120.000    3.000
 320      O10    C6     C5      120.000    3.000
 320      C1     C6     C5      120.000    3.000
 320      C6     C1     C7      132.000    3.000
 320      C6     C1     C2      120.000    3.000
 320      C7     C1     C2      120.000    3.000
 320      C1     C7     H7      108.000    3.000
 320      C1     C7     C8      108.000    3.000
 320      H7     C7     C8      126.000    3.000
 320      C7     C8     H8      126.000    3.000
 320      C7     C8     N9      108.000    3.000
 320      H8     C8     N9      126.000    3.000
 320      C8     N9     HN9     126.000    3.000
 320      C8     N9     C2      108.000    3.000
 320      HN9    N9     C2      126.000    3.000
 320      N9     C2     N3      132.000    3.000
 320      N9     C2     C1      108.000    3.000
 320      N3     C2     C1      120.000    3.000
 320      C2     N3     C4      120.000    3.000
 320      N3     C4     H4      120.000    3.000
 320      N3     C4     C5      120.000    3.000
 320      H4     C4     C5      120.000    3.000
 320      C4     C5     H5      120.000    3.000
 320      C4     C5     C6      120.000    3.000
 320      H5     C5     C6      120.000    3.000
 320      C11    C12    H12     120.000    3.000
 320      C11    C12    C13     120.000    3.000
 320      H12    C12    C13     120.000    3.000
 320      C12    C13    H13     120.000    3.000
 320      C12    C13    C14     120.000    3.000
 320      H13    C13    C14     120.000    3.000
 320      C13    C14    N18     120.000    3.000
 320      C13    C14    C15     120.000    3.000
 320      N18    C14    C15     120.000    3.000
 320      C14    N18    HN18    120.000    3.000
 320      C14    N18    C19     120.000    3.000
 320      HN18   N18    C19     120.000    3.000
 320      N18    C19    O24     123.000    3.000
 320      N18    C19    N20     120.000    3.000
 320      O24    C19    N20     123.000    3.000
 320      C19    N20    HN20    120.000    3.000
 320      C19    N20    C21     120.000    3.000
 320      HN20   N20    C21     120.000    3.000
 320      N20    C21    O25     123.000    3.000
 320      N20    C21    C22     116.500    3.000
 320      O25    C21    C22     120.500    3.000
 320      C21    C22    H22     109.470    3.000
 320      C21    C22    H22A    109.470    3.000
 320      C21    C22    C23     109.470    3.000
 320      H22    C22    H22A    107.900    3.000
 320      H22    C22    C23     109.470    3.000
 320      H22A   C22    C23     109.470    3.000
 320      C22    C23    C30     120.000    3.000
 320      C22    C23    C26     120.000    3.000
 320      C30    C23    C26     120.000    3.000
 320      C23    C30    H30     120.000    3.000
 320      C23    C30    C29     120.000    3.000
 320      H30    C30    C29     120.000    3.000
 320      C30    C29    H29     120.000    3.000
 320      C30    C29    C28     120.000    3.000
 320      H29    C29    C28     120.000    3.000
 320      C23    C26    H26     120.000    3.000
 320      C23    C26    C27     120.000    3.000
 320      H26    C26    C27     120.000    3.000
 320      C26    C27    H27     120.000    3.000
 320      C26    C27    C28     120.000    3.000
 320      H27    C27    C28     120.000    3.000
 320      C27    C28    F31     120.000    3.000
 320      C27    C28    C29     120.000    3.000
 320      F31    C28    C29     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 320      CONST_1  F17    C16    C15    C14      180.000    0.000   0
 320      CONST_2  F17    C16    C11    C12      180.000    0.000   0
 320      var_1    C16    C11    O10    C6        86.622   20.000   1
 320      var_2    C11    O10    C6     C1       174.649   20.000   1
 320      CONST_3  O10    C6     C5     C4       180.000    0.000   0
 320      CONST_4  O10    C6     C1     C7         0.000    0.000   0
 320      CONST_5  C6     C1     C7     C8       180.000    0.000   0
 320      CONST_6  C1     C7     C8     N9         0.000    0.000   0
 320      CONST_7  C7     C8     N9     C2         0.000    0.000   0
 320      CONST_8  C8     N9     C2     N3       180.000    0.000   0
 320      CONST_9  N9     C2     C1     C6       180.000    0.000   0
 320      CONST_10 N9     C2     N3     C4       180.000    0.000   0
 320      CONST_11 C2     N3     C4     C5         0.000    0.000   0
 320      CONST_12 N3     C4     C5     C6         0.000    0.000   0
 320      CONST_13 C16    C11    C12    C13        0.000    0.000   0
 320      CONST_14 C11    C12    C13    C14        0.000    0.000   0
 320      CONST_15 C12    C13    C14    N18      180.000    0.000   0
 320      CONST_16 C13    C14    C15    C16        0.000    0.000   0
 320      var_3    C13    C14    N18    C19     -145.045   20.000   1
 320      CONST_17 C14    N18    C19    N20      180.000    0.000   0
 320      CONST_18 N18    C19    N20    C21      180.000    0.000   0
 320      CONST_19 C19    N20    C21    C22      180.000    0.000   0
 320      var_4    N20    C21    C22    C23      179.982   20.000   3
 320      var_5    C21    C22    C23    C26      -89.701   20.000   2
 320      CONST_20 C22    C23    C30    C29      180.000    0.000   0
 320      CONST_21 C23    C30    C29    C28        0.000    0.000   0
 320      CONST_22 C22    C23    C26    C27      180.000    0.000   0
 320      CONST_23 C23    C26    C27    C28        0.000    0.000   0
 320      CONST_24 C26    C27    C28    F31      180.000    0.000   0
 320      CONST_25 C27    C28    C29    C30        0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 320      plan-1    C28       0.020
 320      plan-1    F31       0.020
 320      plan-1    C29       0.020
 320      plan-1    C27       0.020
 320      plan-1    C30       0.020
 320      plan-1    C26       0.020
 320      plan-1    C23       0.020
 320      plan-1    H29       0.020
 320      plan-1    H30       0.020
 320      plan-1    H27       0.020
 320      plan-1    H26       0.020
 320      plan-1    C22       0.020
 320      plan-2    C21       0.020
 320      plan-2    C22       0.020
 320      plan-2    O25       0.020
 320      plan-2    N20       0.020
 320      plan-2    HN20      0.020
 320      plan-3    N20       0.020
 320      plan-3    C21       0.020
 320      plan-3    C19       0.020
 320      plan-3    HN20      0.020
 320      plan-4    C19       0.020
 320      plan-4    N20       0.020
 320      plan-4    O24       0.020
 320      plan-4    N18       0.020
 320      plan-4    HN20      0.020
 320      plan-4    HN18      0.020
 320      plan-5    N18       0.020
 320      plan-5    C19       0.020
 320      plan-5    C14       0.020
 320      plan-5    HN18      0.020
 320      plan-6    C14       0.020
 320      plan-6    N18       0.020
 320      plan-6    C15       0.020
 320      plan-6    C13       0.020
 320      plan-6    C16       0.020
 320      plan-6    C12       0.020
 320      plan-6    C11       0.020
 320      plan-6    H15       0.020
 320      plan-6    F17       0.020
 320      plan-6    H13       0.020
 320      plan-6    H12       0.020
 320      plan-6    O10       0.020
 320      plan-6    HN18      0.020
 320      plan-7    C6        0.020
 320      plan-7    O10       0.020
 320      plan-7    C5        0.020
 320      plan-7    C1        0.020
 320      plan-7    C4        0.020
 320      plan-7    N3        0.020
 320      plan-7    H5        0.020
 320      plan-7    H4        0.020
 320      plan-7    C2        0.020
 320      plan-7    N9        0.020
 320      plan-7    C8        0.020
 320      plan-7    C7        0.020
 320      plan-7    HN9       0.020
 320      plan-7    H8        0.020
 320      plan-7    H7        0.020
# ------------------------------------------------------