File: 340.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (317 lines) | stat: -rw-r--r-- 14,324 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
340      340 '5-METHOXY-1,2-DIMETHYL-3-(PHENOXYMET' non-polymer        40  23 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_340
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 340           O11    O    O         0.000      0.000    0.000    0.000
 340           C2     C    CR6       0.000     -0.993   -0.105   -0.695
 340           C3     C    CR56      0.000     -2.324   -0.170   -0.070
 340           N7     N    NR5       0.000     -2.744   -0.139    1.229
 340           C12    C    CH3       0.000     -1.874   -0.019    2.401
 340           H123   H    H         0.000     -2.323   -0.513    3.220
 340           H122   H    H         0.000     -0.938   -0.463    2.186
 340           H121   H    H         0.000     -1.739    1.004    2.631
 340           C8     C    CR5       0.000     -4.096   -0.234    1.260
 340           C37    C    CH3       0.000     -4.943   -0.234    2.507
 340           H373   H    H         0.000     -5.818   -0.807    2.339
 340           H372   H    H         0.000     -4.392   -0.657    3.307
 340           H371   H    H         0.000     -5.213    0.760    2.751
 340           C9     C    CR5       0.000     -4.564   -0.329   -0.009
 340           C4     C    CR56      0.000     -3.452   -0.290   -0.871
 340           C5     C    CR6       0.000     -3.305   -0.345   -2.339
 340           O10    O    O         0.000     -4.285   -0.445   -3.048
 340           C6     C    CR6       0.000     -1.949   -0.282   -2.942
 340           O44    O    O2        0.000     -1.807   -0.336   -4.287
 340           C45    C    CH3       0.000     -0.421   -0.129   -4.565
 340           H453   H    H         0.000     -0.124    0.818   -4.194
 340           H452   H    H         0.000      0.151   -0.887   -4.096
 340           H451   H    H         0.000     -0.261   -0.163   -5.611
 340           C1     C    CR16      0.000     -0.861   -0.166   -2.156
 340           H11    H    H         0.000      0.122   -0.118   -2.608
 340           C19    C    CH2       0.000     -6.008   -0.452   -0.420
 340           H191   H    H         0.000     -6.565   -0.973    0.361
 340           H192   H    H         0.000     -6.073   -1.019   -1.351
 340           O20    O    O2        0.000     -6.561    0.850   -0.614
 340           C24    C    CR6       0.000     -7.857    0.675   -0.980
 340           C29    C    CR16      0.000     -8.379   -0.604   -1.102
 340           H291   H    H         0.000     -7.752   -1.465   -0.909
 340           C28    C    CR16      0.000     -9.699   -0.778   -1.469
 340           H281   H    H         0.000    -10.110   -1.777   -1.555
 340           C27    C    CR16      0.000    -10.497    0.321   -1.728
 340           H271   H    H         0.000    -11.530    0.182   -2.022
 340           C26    C    CR16      0.000     -9.979    1.597   -1.614
 340           H261   H    H         0.000    -10.606    2.456   -1.816
 340           C25    C    CR16      0.000     -8.661    1.776   -1.241
 340           H251   H    H         0.000     -8.254    2.776   -1.152
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 340      O11    n/a    C2     START
 340      C2     O11    C3     .
 340      C3     C2     N7     .
 340      N7     C3     C8     .
 340      C12    N7     H121   .
 340      H123   C12    .      .
 340      H122   C12    .      .
 340      H121   C12    .      .
 340      C8     N7     C9     .
 340      C37    C8     H371   .
 340      H373   C37    .      .
 340      H372   C37    .      .
 340      H371   C37    .      .
 340      C9     C8     C19    .
 340      C4     C9     C5     .
 340      C5     C4     C6     .
 340      O10    C5     .      .
 340      C6     C5     C1     .
 340      O44    C6     C45    .
 340      C45    O44    H451   .
 340      H453   C45    .      .
 340      H452   C45    .      .
 340      H451   C45    .      .
 340      C1     C6     H11    .
 340      H11    C1     .      .
 340      C19    C9     O20    .
 340      H191   C19    .      .
 340      H192   C19    .      .
 340      O20    C19    C24    .
 340      C24    O20    C29    .
 340      C29    C24    C28    .
 340      H291   C29    .      .
 340      C28    C29    C27    .
 340      H281   C28    .      .
 340      C27    C28    C26    .
 340      H271   C27    .      .
 340      C26    C27    C25    .
 340      H261   C26    .      .
 340      C25    C26    H251   .
 340      H251   C25    .      END
 340      C1     C2     .    ADD
 340      C3     C4     .    ADD
 340      C24    C25    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 340      C1     C2        single      1.390    0.020
 340      C1     C6        double      1.390    0.020
 340      H11    C1        single      1.083    0.020
 340      C3     C2        single      1.490    0.020
 340      C2     O11       double      1.250    0.020
 340      C3     C4        double      1.490    0.020
 340      N7     C3        single      1.337    0.020
 340      C5     C4        single      1.490    0.020
 340      C4     C9        single      1.490    0.020
 340      C6     C5        single      1.487    0.020
 340      O10    C5        double      1.250    0.020
 340      O44    C6        single      1.370    0.020
 340      C8     N7        single      1.337    0.020
 340      C12    N7        single      1.485    0.020
 340      C9     C8        double      1.490    0.020
 340      C37    C8        single      1.506    0.020
 340      C19    C9        single      1.510    0.020
 340      H121   C12       single      1.059    0.020
 340      H122   C12       single      1.059    0.020
 340      H123   C12       single      1.059    0.020
 340      O20    C19       single      1.426    0.020
 340      H191   C19       single      1.092    0.020
 340      H192   C19       single      1.092    0.020
 340      C24    O20       single      1.370    0.020
 340      C24    C25       double      1.390    0.020
 340      C29    C24       single      1.390    0.020
 340      C25    C26       single      1.390    0.020
 340      H251   C25       single      1.083    0.020
 340      C26    C27       double      1.390    0.020
 340      H261   C26       single      1.083    0.020
 340      C27    C28       single      1.390    0.020
 340      H271   C27       single      1.083    0.020
 340      C28    C29       double      1.390    0.020
 340      H281   C28       single      1.083    0.020
 340      H291   C29       single      1.083    0.020
 340      H371   C37       single      1.059    0.020
 340      H372   C37       single      1.059    0.020
 340      H373   C37       single      1.059    0.020
 340      C45    O44       single      1.426    0.020
 340      H451   C45       single      1.059    0.020
 340      H452   C45       single      1.059    0.020
 340      H453   C45       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 340      O11    C2     C3      120.000    3.000
 340      O11    C2     C1      120.000    3.000
 340      C3     C2     C1      120.000    3.000
 340      C2     C3     N7      120.000    3.000
 340      C2     C3     C4      120.000    3.000
 340      N7     C3     C4      108.000    3.000
 340      C3     N7     C12     126.000    3.000
 340      C3     N7     C8      108.000    3.000
 340      C12    N7     C8      126.000    3.000
 340      N7     C12    H123    109.470    3.000
 340      N7     C12    H122    109.470    3.000
 340      N7     C12    H121    109.470    3.000
 340      H123   C12    H122    109.470    3.000
 340      H123   C12    H121    109.470    3.000
 340      H122   C12    H121    109.470    3.000
 340      N7     C8     C37     126.000    3.000
 340      N7     C8     C9      108.000    3.000
 340      C37    C8     C9      126.000    3.000
 340      C8     C37    H373    109.470    3.000
 340      C8     C37    H372    109.470    3.000
 340      C8     C37    H371    109.470    3.000
 340      H373   C37    H372    109.470    3.000
 340      H373   C37    H371    109.470    3.000
 340      H372   C37    H371    109.470    3.000
 340      C8     C9     C4      108.000    3.000
 340      C8     C9     C19     126.000    3.000
 340      C4     C9     C19     126.000    3.000
 340      C9     C4     C5      132.000    3.000
 340      C9     C4     C3      108.000    3.000
 340      C5     C4     C3      120.000    3.000
 340      C4     C5     O10     120.000    3.000
 340      C4     C5     C6      120.000    3.000
 340      O10    C5     C6      120.000    3.000
 340      C5     C6     O44     120.000    3.000
 340      C5     C6     C1      120.000    3.000
 340      O44    C6     C1      120.000    3.000
 340      C6     O44    C45     120.000    3.000
 340      O44    C45    H453    109.470    3.000
 340      O44    C45    H452    109.470    3.000
 340      O44    C45    H451    109.470    3.000
 340      H453   C45    H452    109.470    3.000
 340      H453   C45    H451    109.470    3.000
 340      H452   C45    H451    109.470    3.000
 340      C6     C1     H11     120.000    3.000
 340      C6     C1     C2      120.000    3.000
 340      H11    C1     C2      120.000    3.000
 340      C9     C19    H191    109.470    3.000
 340      C9     C19    H192    109.470    3.000
 340      C9     C19    O20     109.500    3.000
 340      H191   C19    H192    107.900    3.000
 340      H191   C19    O20     109.470    3.000
 340      H192   C19    O20     109.470    3.000
 340      C19    O20    C24     120.000    3.000
 340      O20    C24    C29     120.000    3.000
 340      O20    C24    C25     120.000    3.000
 340      C29    C24    C25     120.000    3.000
 340      C24    C29    H291    120.000    3.000
 340      C24    C29    C28     120.000    3.000
 340      H291   C29    C28     120.000    3.000
 340      C29    C28    H281    120.000    3.000
 340      C29    C28    C27     120.000    3.000
 340      H281   C28    C27     120.000    3.000
 340      C28    C27    H271    120.000    3.000
 340      C28    C27    C26     120.000    3.000
 340      H271   C27    C26     120.000    3.000
 340      C27    C26    H261    120.000    3.000
 340      C27    C26    C25     120.000    3.000
 340      H261   C26    C25     120.000    3.000
 340      C26    C25    H251    120.000    3.000
 340      C26    C25    C24     120.000    3.000
 340      H251   C25    C24     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 340      CONST_1  O11    C2     C3     N7         0.000    0.000   0
 340      CONST_2  C2     C3     C4     C9       180.000    0.000   0
 340      CONST_3  C2     C3     N7     C8       180.000    0.000   0
 340      var_1    C3     N7     C12    H121      89.939   20.000   1
 340      CONST_4  C3     N7     C8     C9         0.000    0.000   0
 340      var_2    N7     C8     C37    H371      90.073   20.000   1
 340      CONST_5  N7     C8     C9     C19      180.000    0.000   0
 340      CONST_6  C8     C9     C4     C5       180.000    0.000   0
 340      CONST_7  C9     C4     C5     C6       180.000    0.000   0
 340      CONST_8  C4     C5     C6     C1         0.000    0.000   0
 340      var_3    C5     C6     O44    C45      174.720   20.000   1
 340      var_4    C6     O44    C45    H451    -179.999   20.000   1
 340      CONST_9  C5     C6     C1     C2         0.000    0.000   0
 340      CONST_10 C6     C1     C2     O11      180.000    0.000   0
 340      var_5    C8     C9     C19    O20       89.923   20.000   2
 340      var_6    C9     C19    O20    C24     -179.970   20.000   1
 340      var_7    C19    O20    C24    C29       -0.303   20.000   1
 340      CONST_11 O20    C24    C25    C26      180.000    0.000   0
 340      CONST_12 O20    C24    C29    C28      180.000    0.000   0
 340      CONST_13 C24    C29    C28    C27        0.000    0.000   0
 340      CONST_14 C29    C28    C27    C26        0.000    0.000   0
 340      CONST_15 C28    C27    C26    C25        0.000    0.000   0
 340      CONST_16 C27    C26    C25    C24        0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 340      plan-1    C1        0.020
 340      plan-1    C2        0.020
 340      plan-1    C6        0.020
 340      plan-1    H11       0.020
 340      plan-1    C5        0.020
 340      plan-1    C3        0.020
 340      plan-1    O11       0.020
 340      plan-1    C4        0.020
 340      plan-1    N7        0.020
 340      plan-1    C8        0.020
 340      plan-1    C9        0.020
 340      plan-1    O10       0.020
 340      plan-1    O44       0.020
 340      plan-1    C12       0.020
 340      plan-1    C37       0.020
 340      plan-1    C19       0.020
 340      plan-2    C24       0.020
 340      plan-2    O20       0.020
 340      plan-2    C25       0.020
 340      plan-2    C29       0.020
 340      plan-2    C26       0.020
 340      plan-2    C27       0.020
 340      plan-2    C28       0.020
 340      plan-2    H251      0.020
 340      plan-2    H261      0.020
 340      plan-2    H271      0.020
 340      plan-2    H281      0.020
 340      plan-2    H291      0.020
# ------------------------------------------------------