File: 34T.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (245 lines) | stat: -rw-r--r-- 10,396 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
34T      34T '(3R)-8-(dioxidosulfanyl)-3-methyl-1,' non-polymer        27  14 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_34T
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 34T           O2     O    OS        0.000      0.000    0.000    0.000
 34T           S      S    ST        0.000     -0.284   -1.174    0.749
 34T           HS     H    H         0.000     -0.193   -0.863    1.939
 34T           O1     O    OS        0.000      0.434   -2.390    0.589
 34T           C8     C    CR6       0.000     -1.979   -1.554    0.455
 34T           C7     C    CR16      0.000     -2.403   -2.865    0.489
 34T           H7     H    H         0.000     -1.695   -3.658    0.696
 34T           C6     C    CR16      0.000     -3.733   -3.166    0.258
 34T           H6     H    H         0.000     -4.067   -4.196    0.281
 34T           C5     C    CR16      0.000     -4.633   -2.153   -0.001
 34T           H5     H    H         0.000     -5.674   -2.392   -0.180
 34T           C9     C    CR6       0.000     -2.884   -0.524    0.189
 34T           N      N    NH1       0.000     -2.391    0.778    0.153
 34T           HN     H    H         0.000     -1.415    1.000    0.019
 34T           C1     C    CH2       0.000     -3.432    1.793    0.330
 34T           H1A    H    H         0.000     -3.010    2.788    0.173
 34T           H1     H    H         0.000     -3.845    1.729    1.339
 34T           C4     C    CR6       0.000     -4.215   -0.831   -0.035
 34T           C3     C    CH2       0.000     -5.244    0.234   -0.318
 34T           H3     H    H         0.000     -5.856    0.392    0.572
 34T           H3A    H    H         0.000     -5.882   -0.090   -1.143
 34T           C2     C    CH1       0.000     -4.543    1.540   -0.696
 34T           H2     H    H         0.000     -4.108    1.452   -1.702
 34T           C10    C    CH3       0.000     -5.548    2.694   -0.666
 34T           H10B   H    H         0.000     -6.313    2.516   -1.377
 34T           H10A   H    H         0.000     -5.975    2.767    0.300
 34T           H10    H    H         0.000     -5.053    3.601   -0.902
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 34T      O2     n/a    S      START
 34T      S      O2     C8     .
 34T      HS     S      .      .
 34T      O1     S      .      .
 34T      C8     S      C9     .
 34T      C7     C8     C6     .
 34T      H7     C7     .      .
 34T      C6     C7     C5     .
 34T      H6     C6     .      .
 34T      C5     C6     H5     .
 34T      H5     C5     .      .
 34T      C9     C8     C4     .
 34T      N      C9     C1     .
 34T      HN     N      .      .
 34T      C1     N      H1     .
 34T      H1A    C1     .      .
 34T      H1     C1     .      .
 34T      C4     C9     C3     .
 34T      C3     C4     C2     .
 34T      H3     C3     .      .
 34T      H3A    C3     .      .
 34T      C2     C3     C10    .
 34T      H2     C2     .      .
 34T      C10    C2     H10    .
 34T      H10B   C10    .      .
 34T      H10A   C10    .      .
 34T      H10    C10    .      END
 34T      C1     C2     .    ADD
 34T      C4     C5     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 34T      C8     S         single      1.595    0.020
 34T      HS     S         single      1.234    0.020
 34T      S      O2        double      1.436    0.020
 34T      O1     S         double      1.436    0.020
 34T      C1     C2        single      1.524    0.020
 34T      H1     C1        single      1.092    0.020
 34T      H1A    C1        single      1.092    0.020
 34T      C10    C2        single      1.524    0.020
 34T      H2     C2        single      1.099    0.020
 34T      C2     C3        single      1.524    0.020
 34T      H3     C3        single      1.092    0.020
 34T      H3A    C3        single      1.092    0.020
 34T      C3     C4        single      1.511    0.020
 34T      C4     C5        single      1.390    0.020
 34T      H5     C5        single      1.083    0.020
 34T      C5     C6        double      1.390    0.020
 34T      H6     C6        single      1.083    0.020
 34T      C6     C7        single      1.390    0.020
 34T      C7     C8        double      1.390    0.020
 34T      H7     C7        single      1.083    0.020
 34T      C9     C8        single      1.487    0.020
 34T      C4     C9        double      1.487    0.020
 34T      N      C9        single      1.350    0.020
 34T      H10    C10       single      1.059    0.020
 34T      H10A   C10       single      1.059    0.020
 34T      H10B   C10       single      1.059    0.020
 34T      C1     N         single      1.450    0.020
 34T      HN     N         single      1.010    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 34T      O2     S      HS      109.500    3.000
 34T      O2     S      O1      109.500    3.000
 34T      O2     S      C8      109.500    3.000
 34T      HS     S      O1      109.500    3.000
 34T      HS     S      C8      109.500    3.000
 34T      O1     S      C8      109.500    3.000
 34T      S      C8     C7      120.000    3.000
 34T      S      C8     C9      120.000    3.000
 34T      C7     C8     C9      120.000    3.000
 34T      C8     C7     H7      120.000    3.000
 34T      C8     C7     C6      120.000    3.000
 34T      H7     C7     C6      120.000    3.000
 34T      C7     C6     H6      120.000    3.000
 34T      C7     C6     C5      120.000    3.000
 34T      H6     C6     C5      120.000    3.000
 34T      C6     C5     H5      120.000    3.000
 34T      C6     C5     C4      120.000    3.000
 34T      H5     C5     C4      120.000    3.000
 34T      C8     C9     N       120.000    3.000
 34T      C8     C9     C4      120.000    3.000
 34T      N      C9     C4      120.000    3.000
 34T      C9     N      HN      120.000    3.000
 34T      C9     N      C1      120.000    3.000
 34T      HN     N      C1      118.500    3.000
 34T      N      C1     H1A     109.470    3.000
 34T      N      C1     H1      109.470    3.000
 34T      N      C1     C2      110.000    3.000
 34T      H1A    C1     H1      107.900    3.000
 34T      H1A    C1     C2      109.470    3.000
 34T      H1     C1     C2      109.470    3.000
 34T      C9     C4     C3      120.000    3.000
 34T      C9     C4     C5      120.000    3.000
 34T      C3     C4     C5      120.000    3.000
 34T      C4     C3     H3      109.470    3.000
 34T      C4     C3     H3A     109.470    3.000
 34T      C4     C3     C2      109.470    3.000
 34T      H3     C3     H3A     107.900    3.000
 34T      H3     C3     C2      109.470    3.000
 34T      H3A    C3     C2      109.470    3.000
 34T      C3     C2     H2      108.340    3.000
 34T      C3     C2     C10     111.000    3.000
 34T      C3     C2     C1      109.470    3.000
 34T      H2     C2     C10     108.340    3.000
 34T      H2     C2     C1      108.340    3.000
 34T      C10    C2     C1      111.000    3.000
 34T      C2     C10    H10B    109.470    3.000
 34T      C2     C10    H10A    109.470    3.000
 34T      C2     C10    H10     109.470    3.000
 34T      H10B   C10    H10A    109.470    3.000
 34T      H10B   C10    H10     109.470    3.000
 34T      H10A   C10    H10     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 34T      var_1    O2     S      C8     C9       -30.154   20.000   1
 34T      CONST_1  S      C8     C7     C6       180.000    0.000   0
 34T      CONST_2  C8     C7     C6     C5         0.000    0.000   0
 34T      CONST_3  C7     C6     C5     C4         0.000    0.000   0
 34T      CONST_4  S      C8     C9     C4       180.000    0.000   0
 34T      var_2    C8     C9     N      C1      -150.000   20.000   1
 34T      var_3    C9     N      C1     C2       -60.000   20.000   3
 34T      var_4    N      C1     C2     C3        60.000   20.000   3
 34T      CONST_5  C8     C9     C4     C3       180.000    0.000   0
 34T      CONST_6  C9     C4     C5     C6         0.000    0.000   0
 34T      var_5    C9     C4     C3     C2        30.000   20.000   2
 34T      var_6    C4     C3     C2     C10      180.000   20.000   3
 34T      var_7    C3     C2     C10    H10      178.414   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 34T      chir_01  S      O1     C8     O2        positiv
 34T      chir_02  C2     C1     C3     C10       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 34T      plan-1    C4        0.020
 34T      plan-1    C3        0.020
 34T      plan-1    C5        0.020
 34T      plan-1    C9        0.020
 34T      plan-1    C6        0.020
 34T      plan-1    C7        0.020
 34T      plan-1    C8        0.020
 34T      plan-1    H5        0.020
 34T      plan-1    H6        0.020
 34T      plan-1    H7        0.020
 34T      plan-1    S         0.020
 34T      plan-1    N         0.020
 34T      plan-1    HN        0.020
 34T      plan-2    N         0.020
 34T      plan-2    C1        0.020
 34T      plan-2    C9        0.020
 34T      plan-2    HN        0.020
# ------------------------------------------------------