File: 367.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (404 lines) | stat: -rw-r--r-- 18,349 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
367      367 '"3-HYDROXYPROPYL 3-[({7-[AMINO(IMINO' non-polymer        51  30 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_367
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 367           O43    O    OS        0.000      0.000    0.000    0.000
 367           S36    S    ST        0.000     -1.448    0.017    0.155
 367           O42    O    OS        0.000     -2.060   -0.215    1.455
 367           O38    O    O2        0.000     -1.984    1.456   -0.423
 367           C44    C    CH2       0.000     -1.619    2.656    0.242
 367           H441   H    H         0.000     -0.531    2.750    0.243
 367           H442   H    H         0.000     -1.981    2.622    1.271
 367           C45    C    CH2       0.000     -2.232    3.849   -0.475
 367           H451   H    H         0.000     -3.315    3.717   -0.489
 367           H452   H    H         0.000     -1.854    3.861   -1.499
 367           C46    C    CH2       0.000     -1.888    5.162    0.209
 367           H461   H    H         0.000     -0.805    5.304    0.214
 367           H462   H    H         0.000     -2.256    5.151    1.237
 367           O47    O    OH1       0.000     -2.503    6.226   -0.504
 367           H47    H    H         0.000     -1.822    6.756   -0.939
 367           C31    C    CR6       0.000     -2.113   -1.176   -0.932
 367           C30    C    CR16      0.000     -1.395   -1.565   -2.063
 367           H30    H    H         0.000     -0.426   -1.127   -2.267
 367           C29    C    CR16      0.000     -1.925   -2.520   -2.931
 367           H29    H    H         0.000     -1.369   -2.822   -3.810
 367           C28    C    CR16      0.000     -3.173   -3.085   -2.668
 367           H28    H    H         0.000     -3.589   -3.828   -3.337
 367           C32    C    CR16      0.000     -3.361   -1.740   -0.670
 367           H32    H    H         0.000     -3.923   -1.441    0.206
 367           C27    C    CR6       0.000     -3.875   -2.688   -1.540
 367           C21    C    C         0.000     -5.191   -3.286   -1.263
 367           O22    O    O         0.000     -5.462   -4.424   -1.639
 367           N20    N    NH1       0.000     -6.065   -2.475   -0.516
 367           H20    H    H         0.000     -5.715   -1.559   -0.272
 367           C02    C    CR6       0.000     -7.358   -2.773   -0.069
 367           C01    C    CR66      0.000     -7.880   -2.219    1.111
 367           C10    C    CR16      0.000     -7.126   -1.335    1.901
 367           H10    H    H         0.000     -6.120   -1.072    1.599
 367           C11    C    CR6       0.000     -7.661   -0.792    3.069
 367           C17    C    C         0.000     -6.870    0.124    3.876
 367           N19    N    NH2       0.000     -7.309    0.717    5.054
 367           H192   H    H         0.000     -8.243    0.531    5.421
 367           H191   H    H         0.000     -6.708    1.354    5.579
 367           N18    N    N         0.000     -5.652    0.413    3.465
 367           H18    H    H         0.000     -5.087    1.014    3.964
 367           C14    C    CR16      0.000     -8.953   -1.126    3.466
 367           H14    H    H         0.000     -9.366   -0.705    4.374
 367           C13    C    CR16      0.000     -9.716   -2.003    2.694
 367           H13    H    H         0.000    -10.720   -2.258    3.008
 367           C06    C    CR66      0.000     -9.193   -2.558    1.514
 367           C05    C    CR16      0.000     -9.947   -3.443    0.725
 367           H05    H    H         0.000    -10.953   -3.706    1.026
 367           C04    C    CR16      0.000     -9.412   -3.986   -0.444
 367           H04    H    H         0.000    -10.003   -4.667   -1.043
 367           C03    C    CR16      0.000     -8.120   -3.652   -0.840
 367           H03    H    H         0.000     -7.707   -4.074   -1.748
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 367      O43    n/a    S36    START
 367      S36    O43    C31    .
 367      O42    S36    .      .
 367      O38    S36    C44    .
 367      C44    O38    C45    .
 367      H441   C44    .      .
 367      H442   C44    .      .
 367      C45    C44    C46    .
 367      H451   C45    .      .
 367      H452   C45    .      .
 367      C46    C45    O47    .
 367      H461   C46    .      .
 367      H462   C46    .      .
 367      O47    C46    H47    .
 367      H47    O47    .      .
 367      C31    S36    C32    .
 367      C30    C31    C29    .
 367      H30    C30    .      .
 367      C29    C30    C28    .
 367      H29    C29    .      .
 367      C28    C29    H28    .
 367      H28    C28    .      .
 367      C32    C31    C27    .
 367      H32    C32    .      .
 367      C27    C32    C21    .
 367      C21    C27    N20    .
 367      O22    C21    .      .
 367      N20    C21    C02    .
 367      H20    N20    .      .
 367      C02    N20    C01    .
 367      C01    C02    C10    .
 367      C10    C01    C11    .
 367      H10    C10    .      .
 367      C11    C10    C14    .
 367      C17    C11    N18    .
 367      N19    C17    H191   .
 367      H192   N19    .      .
 367      H191   N19    .      .
 367      N18    C17    H18    .
 367      H18    N18    .      .
 367      C14    C11    C13    .
 367      H14    C14    .      .
 367      C13    C14    C06    .
 367      H13    C13    .      .
 367      C06    C13    C05    .
 367      C05    C06    C04    .
 367      H05    C05    .      .
 367      C04    C05    C03    .
 367      H04    C04    .      .
 367      C03    C04    H03    .
 367      H03    C03    .      END
 367      C01    C06    .    ADD
 367      C02    C03    .    ADD
 367      C27    C28    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 367      C01    C02       double      1.490    0.020
 367      C01    C06       single      1.490    0.020
 367      C10    C01       single      1.390    0.020
 367      C02    C03       single      1.390    0.020
 367      C02    N20       single      1.350    0.020
 367      C03    C04       double      1.390    0.020
 367      H03    C03       single      1.083    0.020
 367      C04    C05       single      1.390    0.020
 367      H04    C04       single      1.083    0.020
 367      C05    C06       double      1.390    0.020
 367      H05    C05       single      1.083    0.020
 367      C06    C13       single      1.390    0.020
 367      C11    C10       double      1.390    0.020
 367      H10    C10       single      1.083    0.020
 367      C14    C11       single      1.390    0.020
 367      C17    C11       single      1.500    0.020
 367      C13    C14       double      1.390    0.020
 367      H13    C13       single      1.083    0.020
 367      H14    C14       single      1.083    0.020
 367      N18    C17       double      1.260    0.020
 367      N19    C17       single      1.332    0.020
 367      H18    N18       single      0.954    0.020
 367      H191   N19       single      1.010    0.020
 367      H192   N19       single      1.010    0.020
 367      N20    C21       single      1.330    0.020
 367      H20    N20       single      1.010    0.020
 367      O22    C21       double      1.220    0.020
 367      C21    C27       single      1.500    0.020
 367      C27    C28       double      1.390    0.020
 367      C27    C32       single      1.390    0.020
 367      C28    C29       single      1.390    0.020
 367      H28    C28       single      1.083    0.020
 367      C29    C30       double      1.390    0.020
 367      H29    C29       single      1.083    0.020
 367      C30    C31       single      1.390    0.020
 367      H30    C30       single      1.083    0.020
 367      C32    C31       double      1.390    0.020
 367      C31    S36       single      1.595    0.020
 367      H32    C32       single      1.083    0.020
 367      O38    S36       single      1.535    0.020
 367      O42    S36       double      1.436    0.020
 367      S36    O43       double      1.436    0.020
 367      C44    O38       single      1.426    0.020
 367      C45    C44       single      1.524    0.020
 367      H441   C44       single      1.092    0.020
 367      H442   C44       single      1.092    0.020
 367      C46    C45       single      1.524    0.020
 367      H451   C45       single      1.092    0.020
 367      H452   C45       single      1.092    0.020
 367      O47    C46       single      1.432    0.020
 367      H461   C46       single      1.092    0.020
 367      H462   C46       single      1.092    0.020
 367      H47    O47       single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 367      O43    S36    O42     109.500    3.000
 367      O43    S36    O38     109.500    3.000
 367      O43    S36    C31     109.500    3.000
 367      O42    S36    O38     109.500    3.000
 367      O42    S36    C31     109.500    3.000
 367      O38    S36    C31     109.500    3.000
 367      S36    O38    C44     120.000    3.000
 367      O38    C44    H441    109.470    3.000
 367      O38    C44    H442    109.470    3.000
 367      O38    C44    C45     109.470    3.000
 367      H441   C44    H442    107.900    3.000
 367      H441   C44    C45     109.470    3.000
 367      H442   C44    C45     109.470    3.000
 367      C44    C45    H451    109.470    3.000
 367      C44    C45    H452    109.470    3.000
 367      C44    C45    C46     111.000    3.000
 367      H451   C45    H452    107.900    3.000
 367      H451   C45    C46     109.470    3.000
 367      H452   C45    C46     109.470    3.000
 367      C45    C46    H461    109.470    3.000
 367      C45    C46    H462    109.470    3.000
 367      C45    C46    O47     109.470    3.000
 367      H461   C46    H462    107.900    3.000
 367      H461   C46    O47     109.470    3.000
 367      H462   C46    O47     109.470    3.000
 367      C46    O47    H47     109.470    3.000
 367      S36    C31    C30     120.000    3.000
 367      S36    C31    C32     120.000    3.000
 367      C30    C31    C32     120.000    3.000
 367      C31    C30    H30     120.000    3.000
 367      C31    C30    C29     120.000    3.000
 367      H30    C30    C29     120.000    3.000
 367      C30    C29    H29     120.000    3.000
 367      C30    C29    C28     120.000    3.000
 367      H29    C29    C28     120.000    3.000
 367      C29    C28    H28     120.000    3.000
 367      C29    C28    C27     120.000    3.000
 367      H28    C28    C27     120.000    3.000
 367      C31    C32    H32     120.000    3.000
 367      C31    C32    C27     120.000    3.000
 367      H32    C32    C27     120.000    3.000
 367      C32    C27    C21     120.000    3.000
 367      C32    C27    C28     120.000    3.000
 367      C21    C27    C28     120.000    3.000
 367      C27    C21    O22     120.500    3.000
 367      C27    C21    N20     120.000    3.000
 367      O22    C21    N20     123.000    3.000
 367      C21    N20    H20     120.000    3.000
 367      C21    N20    C02     120.000    3.000
 367      H20    N20    C02     120.000    3.000
 367      N20    C02    C01     120.000    3.000
 367      N20    C02    C03     120.000    3.000
 367      C01    C02    C03     120.000    3.000
 367      C02    C01    C10     120.000    3.000
 367      C02    C01    C06     120.000    3.000
 367      C10    C01    C06     120.000    3.000
 367      C01    C10    H10     120.000    3.000
 367      C01    C10    C11     120.000    3.000
 367      H10    C10    C11     120.000    3.000
 367      C10    C11    C17     120.000    3.000
 367      C10    C11    C14     120.000    3.000
 367      C17    C11    C14     120.000    3.000
 367      C11    C17    N19     120.000    3.000
 367      C11    C17    N18     120.000    3.000
 367      N19    C17    N18     120.000    3.000
 367      C17    N19    H192    120.000    3.000
 367      C17    N19    H191    120.000    3.000
 367      H192   N19    H191    120.000    3.000
 367      C17    N18    H18     120.000    3.000
 367      C11    C14    H14     120.000    3.000
 367      C11    C14    C13     120.000    3.000
 367      H14    C14    C13     120.000    3.000
 367      C14    C13    H13     120.000    3.000
 367      C14    C13    C06     120.000    3.000
 367      H13    C13    C06     120.000    3.000
 367      C13    C06    C05     120.000    3.000
 367      C13    C06    C01     120.000    3.000
 367      C05    C06    C01     120.000    3.000
 367      C06    C05    H05     120.000    3.000
 367      C06    C05    C04     120.000    3.000
 367      H05    C05    C04     120.000    3.000
 367      C05    C04    H04     120.000    3.000
 367      C05    C04    C03     120.000    3.000
 367      H04    C04    C03     120.000    3.000
 367      C04    C03    H03     120.000    3.000
 367      C04    C03    C02     120.000    3.000
 367      H03    C03    C02     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 367      var_1    O43    S36    O38    C44      -65.635   20.000   1
 367      var_2    S36    O38    C44    C45     -179.995   20.000   1
 367      var_3    O38    C44    C45    C46      179.149   20.000   3
 367      var_4    C44    C45    C46    O47     -179.384   20.000   3
 367      var_5    C45    C46    O47    H47     -111.201   20.000   1
 367      var_6    O43    S36    C31    C32      155.848   20.000   1
 367      CONST_1  S36    C31    C30    C29      180.000    0.000   0
 367      CONST_2  C31    C30    C29    C28        0.000    0.000   0
 367      CONST_3  C30    C29    C28    C27        0.000    0.000   0
 367      CONST_4  S36    C31    C32    C27      180.000    0.000   0
 367      CONST_5  C31    C32    C27    C21      180.000    0.000   0
 367      CONST_6  C32    C27    C28    C29        0.000    0.000   0
 367      var_7    C32    C27    C21    N20       26.985   20.000   1
 367      CONST_7  C27    C21    N20    C02      180.000    0.000   0
 367      var_8    C21    N20    C02    C01      150.009   20.000   1
 367      CONST_8  N20    C02    C03    C04      180.000    0.000   0
 367      CONST_9  N20    C02    C01    C10        0.000    0.000   0
 367      CONST_10 C02    C01    C06    C13      180.000    0.000   0
 367      CONST_11 C02    C01    C10    C11      180.000    0.000   0
 367      CONST_12 C01    C10    C11    C14        0.000    0.000   0
 367      var_9    C10    C11    C17    N18       -0.020   20.000   1
 367      CONST_13 C11    C17    N19    H191     180.000    0.000   0
 367      CONST_14 C11    C17    N18    H18      180.000    0.000   0
 367      CONST_15 C10    C11    C14    C13        0.000    0.000   0
 367      CONST_16 C11    C14    C13    C06        0.000    0.000   0
 367      CONST_17 C14    C13    C06    C05      180.000    0.000   0
 367      CONST_18 C13    C06    C05    C04      180.000    0.000   0
 367      CONST_19 C06    C05    C04    C03        0.000    0.000   0
 367      CONST_20 C05    C04    C03    C02        0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 367      chir_01  S36    C31    O38    O42       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 367      plan-1    C01       0.020
 367      plan-1    C02       0.020
 367      plan-1    C06       0.020
 367      plan-1    C10       0.020
 367      plan-1    C11       0.020
 367      plan-1    C13       0.020
 367      plan-1    C14       0.020
 367      plan-1    C03       0.020
 367      plan-1    N20       0.020
 367      plan-1    C04       0.020
 367      plan-1    C05       0.020
 367      plan-1    H03       0.020
 367      plan-1    H04       0.020
 367      plan-1    H05       0.020
 367      plan-1    H10       0.020
 367      plan-1    C17       0.020
 367      plan-1    H13       0.020
 367      plan-1    H14       0.020
 367      plan-1    H20       0.020
 367      plan-2    C17       0.020
 367      plan-2    C11       0.020
 367      plan-2    N18       0.020
 367      plan-2    N19       0.020
 367      plan-2    H18       0.020
 367      plan-2    H192      0.020
 367      plan-2    H191      0.020
 367      plan-3    N19       0.020
 367      plan-3    C17       0.020
 367      plan-3    H191      0.020
 367      plan-3    H192      0.020
 367      plan-4    N20       0.020
 367      plan-4    C02       0.020
 367      plan-4    C21       0.020
 367      plan-4    H20       0.020
 367      plan-5    C21       0.020
 367      plan-5    N20       0.020
 367      plan-5    O22       0.020
 367      plan-5    C27       0.020
 367      plan-5    H20       0.020
 367      plan-6    C27       0.020
 367      plan-6    C21       0.020
 367      plan-6    C28       0.020
 367      plan-6    C32       0.020
 367      plan-6    C29       0.020
 367      plan-6    C30       0.020
 367      plan-6    C31       0.020
 367      plan-6    H28       0.020
 367      plan-6    H29       0.020
 367      plan-6    H30       0.020
 367      plan-6    S36       0.020
 367      plan-6    H32       0.020
# ------------------------------------------------------