File: 397.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (247 lines) | stat: -rw-r--r-- 10,667 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
397      397 '2-(4-HYDROXY-PHENYL)BENZOFURAN-5-OL ' non-polymer        27  17 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_397
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 397           O24    O    OH1       0.000      0.000    0.000    0.000
 397           H24    H    H         0.000      0.318    0.912    0.052
 397           C16    C    CR6       0.000     -1.339    0.000   -0.235
 397           C15    C    CR16      0.000     -1.813   -0.004   -1.539
 397           H15    H    H         0.000     -1.116   -0.008   -2.367
 397           C14    C    CR16      0.000     -3.169   -0.004   -1.782
 397           H14    H    H         0.000     -3.538   -0.008   -2.801
 397           C17    C    CR16      0.000     -2.229    0.000    0.831
 397           H17    H    H         0.000     -1.855   -0.003    1.847
 397           C18    C    CR16      0.000     -3.587    0.004    0.597
 397           H18    H    H         0.000     -4.281    0.010    1.429
 397           C13    C    CR6       0.000     -4.067    0.001   -0.714
 397           C11    C    CR5       0.000     -5.524    0.000   -0.968
 397           O10    O    O2        0.000     -6.094   -0.004   -2.188
 397           C3     C    CR56      0.000     -7.441   -0.002   -2.088
 397           C2     C    CR16      0.000     -8.463   -0.005   -3.029
 397           H2     H    H         0.000     -8.226   -0.010   -4.085
 397           C12    C    CR15      0.000     -6.481   -0.001   -0.012
 397           H12    H    H         0.000     -6.330   -0.005    1.060
 397           C4     C    CR56      0.000     -7.763    0.004   -0.720
 397           C5     C    CR16      0.000     -9.098    0.007   -0.313
 397           H5     H    H         0.000     -9.347    0.010    0.741
 397           C6     C    CR6       0.000    -10.100    0.005   -1.265
 397           O23    O    OH1       0.000    -11.404    0.009   -0.877
 397           H23    H    H         0.000    -11.714   -0.902   -0.782
 397           C1     C    CR16      0.000     -9.779   -0.001   -2.618
 397           H1     H    H         0.000    -10.571   -0.002   -3.357
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 397      O24    n/a    C16    START
 397      H24    O24    .      .
 397      C16    O24    C17    .
 397      C15    C16    C14    .
 397      H15    C15    .      .
 397      C14    C15    H14    .
 397      H14    C14    .      .
 397      C17    C16    C18    .
 397      H17    C17    .      .
 397      C18    C17    C13    .
 397      H18    C18    .      .
 397      C13    C18    C11    .
 397      C11    C13    C12    .
 397      O10    C11    C3     .
 397      C3     O10    C2     .
 397      C2     C3     H2     .
 397      H2     C2     .      .
 397      C12    C11    C4     .
 397      H12    C12    .      .
 397      C4     C12    C5     .
 397      C5     C4     C6     .
 397      H5     C5     .      .
 397      C6     C5     C1     .
 397      O23    C6     H23    .
 397      H23    O23    .      .
 397      C1     C6     H1     .
 397      H1     C1     .      END
 397      C1     C2     .    ADD
 397      C3     C4     .    ADD
 397      C13    C14    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 397      C1     C2        double      1.390    0.020
 397      C1     C6        single      1.390    0.020
 397      H1     C1        single      1.083    0.020
 397      C2     C3        single      1.390    0.020
 397      H2     C2        single      1.083    0.020
 397      C3     C4        double      1.490    0.020
 397      C3     O10       single      1.329    0.020
 397      C5     C4        single      1.390    0.020
 397      C4     C12       single      1.440    0.020
 397      C6     C5        double      1.390    0.020
 397      H5     C5        single      1.083    0.020
 397      O23    C6        single      1.362    0.020
 397      O10    C11       single      1.370    0.020
 397      C12    C11       double      1.387    0.020
 397      C11    C13       single      1.490    0.020
 397      H12    C12       single      1.083    0.020
 397      C13    C14       double      1.390    0.020
 397      C13    C18       single      1.390    0.020
 397      C14    C15       single      1.390    0.020
 397      H14    C14       single      1.083    0.020
 397      C15    C16       double      1.390    0.020
 397      H15    C15       single      1.083    0.020
 397      C17    C16       single      1.390    0.020
 397      C16    O24       single      1.362    0.020
 397      C18    C17       double      1.390    0.020
 397      H17    C17       single      1.083    0.020
 397      H18    C18       single      1.083    0.020
 397      H23    O23       single      0.967    0.020
 397      H24    O24       single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 397      H24    O24    C16     109.470    3.000
 397      O24    C16    C15     120.000    3.000
 397      O24    C16    C17     120.000    3.000
 397      C15    C16    C17     120.000    3.000
 397      C16    C15    H15     120.000    3.000
 397      C16    C15    C14     120.000    3.000
 397      H15    C15    C14     120.000    3.000
 397      C15    C14    H14     120.000    3.000
 397      C15    C14    C13     120.000    3.000
 397      H14    C14    C13     120.000    3.000
 397      C16    C17    H17     120.000    3.000
 397      C16    C17    C18     120.000    3.000
 397      H17    C17    C18     120.000    3.000
 397      C17    C18    H18     120.000    3.000
 397      C17    C18    C13     120.000    3.000
 397      H18    C18    C13     120.000    3.000
 397      C18    C13    C11     120.000    3.000
 397      C18    C13    C14     120.000    3.000
 397      C11    C13    C14     120.000    3.000
 397      C13    C11    O10     126.000    3.000
 397      C13    C11    C12     126.000    3.000
 397      O10    C11    C12     108.000    3.000
 397      C11    O10    C3      120.000    3.000
 397      O10    C3     C2      120.000    3.000
 397      O10    C3     C4      120.000    3.000
 397      C2     C3     C4      120.000    3.000
 397      C3     C2     H2      120.000    3.000
 397      C3     C2     C1      120.000    3.000
 397      H2     C2     C1      120.000    3.000
 397      C11    C12    H12     126.000    3.000
 397      C11    C12    C4      108.000    3.000
 397      H12    C12    C4      108.000    3.000
 397      C12    C4     C5      126.000    3.000
 397      C12    C4     C3      120.000    3.000
 397      C5     C4     C3      120.000    3.000
 397      C4     C5     H5      120.000    3.000
 397      C4     C5     C6      120.000    3.000
 397      H5     C5     C6      120.000    3.000
 397      C5     C6     O23     120.000    3.000
 397      C5     C6     C1      120.000    3.000
 397      O23    C6     C1      120.000    3.000
 397      C6     O23    H23     109.470    3.000
 397      C6     C1     H1      120.000    3.000
 397      C6     C1     C2      120.000    3.000
 397      H1     C1     C2      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 397      var_1    H24    O24    C16    C17      -90.255   20.000   1
 397      CONST_1  O24    C16    C15    C14      180.000    0.000   0
 397      CONST_2  C16    C15    C14    C13        0.000    0.000   0
 397      CONST_3  O24    C16    C17    C18      180.000    0.000   0
 397      CONST_4  C16    C17    C18    C13        0.000    0.000   0
 397      CONST_5  C17    C18    C13    C11      180.000    0.000   0
 397      CONST_6  C18    C13    C14    C15        0.000    0.000   0
 397      var_2    C18    C13    C11    C12       -0.239   20.000   1
 397      CONST_7  C13    C11    O10    C3       180.000    0.000   0
 397      CONST_8  C11    O10    C3     C2       180.000    0.000   0
 397      CONST_9  O10    C3     C4     C12        0.000    0.000   0
 397      CONST_10 O10    C3     C2     C1       180.000    0.000   0
 397      CONST_11 C13    C11    C12    C4       180.000    0.000   0
 397      CONST_12 C11    C12    C4     C5       180.000    0.000   0
 397      CONST_13 C12    C4     C5     C6       180.000    0.000   0
 397      CONST_14 C4     C5     C6     C1         0.000    0.000   0
 397      var_3    C5     C6     O23    H23      -89.977   20.000   1
 397      CONST_15 C5     C6     C1     C2         0.000    0.000   0
 397      CONST_16 C6     C1     C2     C3         0.000    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 397      plan-1    C1        0.020
 397      plan-1    C2        0.020
 397      plan-1    C6        0.020
 397      plan-1    H1        0.020
 397      plan-1    C5        0.020
 397      plan-1    C3        0.020
 397      plan-1    H2        0.020
 397      plan-1    C4        0.020
 397      plan-1    O10       0.020
 397      plan-1    C11       0.020
 397      plan-1    C12       0.020
 397      plan-1    H5        0.020
 397      plan-1    O23       0.020
 397      plan-1    C13       0.020
 397      plan-1    H12       0.020
 397      plan-2    C13       0.020
 397      plan-2    C11       0.020
 397      plan-2    C14       0.020
 397      plan-2    C18       0.020
 397      plan-2    C15       0.020
 397      plan-2    C16       0.020
 397      plan-2    C17       0.020
 397      plan-2    H14       0.020
 397      plan-2    H15       0.020
 397      plan-2    O24       0.020
 397      plan-2    H17       0.020
 397      plan-2    H18       0.020
# ------------------------------------------------------