File: 3A3.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (298 lines) | stat: -rw-r--r-- 13,306 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
3A3      3A3 '.                                   ' non-polymer        36  25 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_3A3
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 3A3           O13    O    OC       -0.500      0.000    0.000    0.000
 3A3           C12    C    C         0.000     -0.518   -1.139    0.000
 3A3           O25    O    OC       -0.500      0.209   -2.157    0.001
 3A3           C20    C    CH2       0.000     -2.018   -1.284    0.001
 3A3           H201   H    H         0.000     -2.330   -1.831    0.893
 3A3           H202   H    H         0.000     -2.331   -1.833   -0.889
 3A3           O18    O    O2        0.000     -2.622    0.012    0.000
 3A3           C16    C    CR6       0.000     -3.968   -0.183    0.000
 3A3           C9     C    CR16      0.000     -4.824    0.909   -0.001
 3A3           H9     H    H         0.000     -4.421    1.914    0.002
 3A3           C21    C    CR16      0.000     -4.481   -1.473    0.001
 3A3           H21    H    H         0.000     -3.807   -2.321    0.003
 3A3           C7     C    CR16      0.000     -5.845   -1.682    0.000
 3A3           H7     H    H         0.000     -6.238   -2.691    0.000
 3A3           C5     C    CR56      0.000     -6.717   -0.596   -0.001
 3A3           C2     C    CR56      0.000     -6.199    0.710   -0.006
 3A3           C1     C    CR5       0.000     -7.344    1.651    0.000
 3A3           N6     N    N         0.000     -7.277    2.952    0.001
 3A3           O23    O    OH1       0.000     -6.015    3.594    0.001
 3A3           H23    H    H         0.000     -6.137    4.556    0.002
 3A3           C3     C    CR56      0.000     -8.579    0.832    0.000
 3A3           C10    C    CR16      0.000     -9.927    1.172    0.000
 3A3           H10    H    H         0.000    -10.224    2.214    0.000
 3A3           C4     C    CR56      0.000     -8.198   -0.519   -0.001
 3A3           C8     C    CR16      0.000     -9.177   -1.510   -0.001
 3A3           H8     H    H         0.000     -8.890   -2.554   -0.001
 3A3           C22    C    CR16      0.000    -10.513   -1.161   -0.001
 3A3           H22    H    H         0.000    -11.271   -1.934   -0.002
 3A3           C15    C    CR6       0.000    -10.891    0.175    0.000
 3A3           O17    O    O2        0.000    -12.209    0.507    0.000
 3A3           C19    C    CH2       0.000    -12.943   -0.719    0.000
 3A3           H191   H    H         0.000    -12.687   -1.296    0.891
 3A3           H192   H    H         0.000    -12.688   -1.296   -0.892
 3A3           C11    C    C         0.000    -14.420   -0.420    0.001
 3A3           O24    O    OC       -0.500    -15.248   -1.357    0.001
 3A3           O14    O    OC       -0.500    -14.818    0.766    0.001
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 3A3      O13    n/a    C12    START
 3A3      C12    O13    C20    .
 3A3      O25    C12    .      .
 3A3      C20    C12    O18    .
 3A3      H201   C20    .      .
 3A3      H202   C20    .      .
 3A3      O18    C20    C16    .
 3A3      C16    O18    C21    .
 3A3      C9     C16    H9     .
 3A3      H9     C9     .      .
 3A3      C21    C16    C7     .
 3A3      H21    C21    .      .
 3A3      C7     C21    C5     .
 3A3      H7     C7     .      .
 3A3      C5     C7     C4     .
 3A3      C2     C5     C1     .
 3A3      C1     C2     C3     .
 3A3      N6     C1     O23    .
 3A3      O23    N6     H23    .
 3A3      H23    O23    .      .
 3A3      C3     C1     C10    .
 3A3      C10    C3     H10    .
 3A3      H10    C10    .      .
 3A3      C4     C5     C8     .
 3A3      C8     C4     C22    .
 3A3      H8     C8     .      .
 3A3      C22    C8     C15    .
 3A3      H22    C22    .      .
 3A3      C15    C22    O17    .
 3A3      O17    C15    C19    .
 3A3      C19    O17    C11    .
 3A3      H191   C19    .      .
 3A3      H192   C19    .      .
 3A3      C11    C19    O14    .
 3A3      O24    C11    .      .
 3A3      O14    C11    .      END
 3A3      C15    C10    .    ADD
 3A3      C4     C3     .    ADD
 3A3      C2     C9     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 3A3      O24    C11       deloc       1.250    0.020
 3A3      O14    C11       deloc       1.250    0.020
 3A3      C11    C19       single      1.510    0.020
 3A3      C19    O17       single      1.426    0.020
 3A3      H191   C19       single      1.092    0.020
 3A3      H192   C19       single      1.092    0.020
 3A3      O17    C15       single      1.370    0.020
 3A3      C15    C10       double      1.390    0.020
 3A3      C15    C22       single      1.390    0.020
 3A3      C10    C3        single      1.390    0.020
 3A3      H10    C10       single      1.083    0.020
 3A3      C22    C8        double      1.390    0.020
 3A3      H22    C22       single      1.083    0.020
 3A3      C8     C4        single      1.390    0.020
 3A3      H8     C8        single      1.083    0.020
 3A3      C4     C3        double      1.490    0.020
 3A3      C4     C5        single      1.490    0.020
 3A3      C3     C1        single      1.490    0.020
 3A3      N6     C1        double      1.365    0.020
 3A3      C1     C2        single      1.490    0.020
 3A3      O23    N6        single      1.392    0.020
 3A3      H23    O23       single      0.967    0.020
 3A3      C2     C9        double      1.390    0.020
 3A3      C2     C5        single      1.490    0.020
 3A3      C9     C16       single      1.390    0.020
 3A3      H9     C9        single      1.083    0.020
 3A3      C5     C7        double      1.390    0.020
 3A3      C7     C21       single      1.390    0.020
 3A3      H7     C7        single      1.083    0.020
 3A3      C21    C16       double      1.390    0.020
 3A3      H21    C21       single      1.083    0.020
 3A3      C16    O18       single      1.370    0.020
 3A3      O18    C20       single      1.426    0.020
 3A3      C20    C12       single      1.510    0.020
 3A3      H201   C20       single      1.092    0.020
 3A3      H202   C20       single      1.092    0.020
 3A3      O25    C12       deloc       1.250    0.020
 3A3      C12    O13       deloc       1.250    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 3A3      O13    C12    O25     123.000    3.000
 3A3      O13    C12    C20     118.500    3.000
 3A3      O25    C12    C20     118.500    3.000
 3A3      C12    C20    H201    109.470    3.000
 3A3      C12    C20    H202    109.470    3.000
 3A3      C12    C20    O18     109.470    3.000
 3A3      H201   C20    H202    107.900    3.000
 3A3      H201   C20    O18     109.470    3.000
 3A3      H202   C20    O18     109.470    3.000
 3A3      C20    O18    C16     120.000    3.000
 3A3      O18    C16    C9      120.000    3.000
 3A3      O18    C16    C21     120.000    3.000
 3A3      C9     C16    C21     120.000    3.000
 3A3      C16    C9     H9      120.000    3.000
 3A3      C16    C9     C2      120.000    3.000
 3A3      H9     C9     C2      120.000    3.000
 3A3      C16    C21    H21     120.000    3.000
 3A3      C16    C21    C7      120.000    3.000
 3A3      H21    C21    C7      120.000    3.000
 3A3      C21    C7     H7      120.000    3.000
 3A3      C21    C7     C5      120.000    3.000
 3A3      H7     C7     C5      120.000    3.000
 3A3      C7     C5     C2      120.000    3.000
 3A3      C7     C5     C4      120.000    3.000
 3A3      C2     C5     C4      120.000    3.000
 3A3      C5     C2     C1      108.000    3.000
 3A3      C5     C2     C9      120.000    3.000
 3A3      C1     C2     C9      126.000    3.000
 3A3      C2     C1     N6      108.000    3.000
 3A3      C2     C1     C3      108.000    3.000
 3A3      N6     C1     C3      108.000    3.000
 3A3      C1     N6     O23     120.000    3.000
 3A3      N6     O23    H23     109.470    3.000
 3A3      C1     C3     C10     126.000    3.000
 3A3      C1     C3     C4      108.000    3.000
 3A3      C10    C3     C4      120.000    3.000
 3A3      C3     C10    H10     120.000    3.000
 3A3      C3     C10    C15     120.000    3.000
 3A3      H10    C10    C15     120.000    3.000
 3A3      C5     C4     C8      120.000    3.000
 3A3      C5     C4     C3      120.000    3.000
 3A3      C8     C4     C3      120.000    3.000
 3A3      C4     C8     H8      120.000    3.000
 3A3      C4     C8     C22     120.000    3.000
 3A3      H8     C8     C22     120.000    3.000
 3A3      C8     C22    H22     120.000    3.000
 3A3      C8     C22    C15     120.000    3.000
 3A3      H22    C22    C15     120.000    3.000
 3A3      C22    C15    O17     120.000    3.000
 3A3      C22    C15    C10     120.000    3.000
 3A3      O17    C15    C10     120.000    3.000
 3A3      C15    O17    C19     120.000    3.000
 3A3      O17    C19    H191    109.470    3.000
 3A3      O17    C19    H192    109.470    3.000
 3A3      O17    C19    C11     109.470    3.000
 3A3      H191   C19    H192    107.900    3.000
 3A3      H191   C19    C11     109.470    3.000
 3A3      H192   C19    C11     109.470    3.000
 3A3      C19    C11    O24     118.500    3.000
 3A3      C19    C11    O14     118.500    3.000
 3A3      O24    C11    O14     123.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 3A3      var_1    O13    C12    C20    O18        0.078   20.000   3
 3A3      var_2    C12    C20    O18    C16      179.958   20.000   1
 3A3      var_3    C20    O18    C16    C21        0.006   20.000   1
 3A3      CONST_1  O18    C16    C9     C2       180.000    0.000   0
 3A3      CONST_2  O18    C16    C21    C7       180.000    0.000   0
 3A3      CONST_3  C16    C21    C7     C5         0.000    0.000   0
 3A3      CONST_4  C21    C7     C5     C4       180.000    0.000   0
 3A3      CONST_5  C7     C5     C2     C1       180.000    0.000   0
 3A3      CONST_6  C5     C2     C9     C16        0.000    0.000   0
 3A3      CONST_7  C5     C2     C1     C3         0.000    0.000   0
 3A3      CONST_8  C2     C1     N6     O23       -0.230    0.000   0
 3A3      var_4    C1     N6     O23    H23     -179.989   20.000   1
 3A3      CONST_9  C2     C1     C3     C10      180.000    0.000   0
 3A3      CONST_10 C1     C3     C10    C15      180.000    0.000   0
 3A3      CONST_11 C7     C5     C4     C8         0.000    0.000   0
 3A3      CONST_12 C5     C4     C3     C1         0.000    0.000   0
 3A3      CONST_13 C5     C4     C8     C22      180.000    0.000   0
 3A3      CONST_14 C4     C8     C22    C15        0.000    0.000   0
 3A3      CONST_15 C8     C22    C15    O17      180.000    0.000   0
 3A3      CONST_16 C22    C15    C10    C3         0.000    0.000   0
 3A3      var_5    C22    C15    O17    C19        0.048   20.000   1
 3A3      var_6    C15    O17    C19    C11      179.960   20.000   1
 3A3      var_7    O17    C19    C11    O14        0.035   20.000   3
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 3A3      plan-1    C11       0.020
 3A3      plan-1    O24       0.020
 3A3      plan-1    O14       0.020
 3A3      plan-1    C19       0.020
 3A3      plan-2    C15       0.020
 3A3      plan-2    O17       0.020
 3A3      plan-2    C10       0.020
 3A3      plan-2    C22       0.020
 3A3      plan-2    C8        0.020
 3A3      plan-2    C3        0.020
 3A3      plan-2    H10       0.020
 3A3      plan-2    H22       0.020
 3A3      plan-2    C4        0.020
 3A3      plan-2    H8        0.020
 3A3      plan-2    C5        0.020
 3A3      plan-2    C1        0.020
 3A3      plan-2    N6        0.020
 3A3      plan-2    C2        0.020
 3A3      plan-2    O23       0.020
 3A3      plan-2    C9        0.020
 3A3      plan-2    C7        0.020
 3A3      plan-2    C21       0.020
 3A3      plan-2    C16       0.020
 3A3      plan-2    H9        0.020
 3A3      plan-2    H7        0.020
 3A3      plan-2    H21       0.020
 3A3      plan-2    O18       0.020
 3A3      plan-3    C12       0.020
 3A3      plan-3    C20       0.020
 3A3      plan-3    O25       0.020
 3A3      plan-3    O13       0.020
# ------------------------------------------------------