File: 3AS.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (366 lines) | stat: -rw-r--r-- 16,752 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
3AS      3AS '(3aS,4R,9bR)-2,2-difluoro-4-(4-hydro' non-polymer        46  26 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_3AS
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 3AS           F24    F    F         0.000      0.000    0.000    0.000
 3AS           C22    C    CT        0.000     -1.337    0.207   -0.355
 3AS           F23    F    F         0.000     -1.447    0.351   -1.742
 3AS           C21    C    CH2       0.000     -1.882    1.461    0.350
 3AS           H211   H    H         0.000     -2.240    2.191   -0.379
 3AS           H212   H    H         0.000     -1.114    1.920    0.975
 3AS           C17    C    CH1       0.000     -3.059    0.995    1.235
 3AS           H17    H    H         0.000     -3.084    1.549    2.184
 3AS           C19    C    CR6       0.000     -4.336    1.190    0.459
 3AS           C4     C    CR6       0.000     -5.215    0.153    0.212
 3AS           C3     C    CR6       0.000     -6.381    0.384   -0.510
 3AS           C26    C    CH2       0.000     -7.336   -0.750   -0.776
 3AS           H261   H    H         0.000     -7.687   -1.161    0.173
 3AS           H262   H    H         0.000     -6.824   -1.531   -1.342
 3AS           O27    O    O2        0.000     -8.450   -0.268   -1.529
 3AS           C28    C    CH3       0.000     -9.421   -1.270   -1.838
 3AS           H283   H    H         0.000     -9.806   -1.678   -0.940
 3AS           H282   H    H         0.000    -10.212   -0.837   -2.395
 3AS           H281   H    H         0.000     -8.968   -2.039   -2.409
 3AS           C2     C    CR16      0.000     -6.667    1.649   -0.982
 3AS           H2     H    H         0.000     -7.576    1.827   -1.543
 3AS           C20    C    CR16      0.000     -4.625    2.461   -0.017
 3AS           H20    H    H         0.000     -3.939    3.278    0.175
 3AS           C1     C    CR6       0.000     -5.786    2.691   -0.736
 3AS           O29    O    OH1       0.000     -6.060    3.939   -1.203
 3AS           H29    H    H         0.000     -6.569    4.426   -0.541
 3AS           C25    C    CH2       0.000     -2.202   -0.979    0.124
 3AS           H251   H    H         0.000     -1.608   -1.882    0.282
 3AS           H252   H    H         0.000     -3.017   -1.197   -0.569
 3AS           C15    C    CH1       0.000     -2.784   -0.502    1.472
 3AS           H15    H    H         0.000     -2.057   -0.642    2.285
 3AS           C6     C    CH1       0.000     -4.084   -1.237    1.773
 3AS           H6     H    H         0.000     -4.552   -0.803    2.667
 3AS           O5     O    O2        0.000     -4.969   -1.106    0.661
 3AS           C8     C    CR6       0.000     -3.792   -2.695    2.015
 3AS           C14    C    CR16      0.000     -3.601   -3.549    0.943
 3AS           H14    H    H         0.000     -3.666   -3.170   -0.069
 3AS           C13    C    CR16      0.000     -3.328   -4.885    1.164
 3AS           H13    H    H         0.000     -3.171   -5.551    0.325
 3AS           C11    C    CR6       0.000     -3.257   -5.373    2.460
 3AS           O12    O    OH1       0.000     -2.993   -6.688    2.679
 3AS           H12    H    H         0.000     -3.824   -7.181    2.712
 3AS           C10    C    CR16      0.000     -3.454   -4.516    3.534
 3AS           H10    H    H         0.000     -3.399   -4.894    4.547
 3AS           C9     C    CR16      0.000     -3.722   -3.180    3.309
 3AS           H9     H    H         0.000     -3.877   -2.510    4.146
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 3AS      F24    n/a    C22    START
 3AS      C22    F24    C25    .
 3AS      F23    C22    .      .
 3AS      C21    C22    C17    .
 3AS      H211   C21    .      .
 3AS      H212   C21    .      .
 3AS      C17    C21    C19    .
 3AS      H17    C17    .      .
 3AS      C19    C17    C20    .
 3AS      C4     C19    C3     .
 3AS      C3     C4     C2     .
 3AS      C26    C3     O27    .
 3AS      H261   C26    .      .
 3AS      H262   C26    .      .
 3AS      O27    C26    C28    .
 3AS      C28    O27    H281   .
 3AS      H283   C28    .      .
 3AS      H282   C28    .      .
 3AS      H281   C28    .      .
 3AS      C2     C3     H2     .
 3AS      H2     C2     .      .
 3AS      C20    C19    C1     .
 3AS      H20    C20    .      .
 3AS      C1     C20    O29    .
 3AS      O29    C1     H29    .
 3AS      H29    O29    .      .
 3AS      C25    C22    C15    .
 3AS      H251   C25    .      .
 3AS      H252   C25    .      .
 3AS      C15    C25    C6     .
 3AS      H15    C15    .      .
 3AS      C6     C15    C8     .
 3AS      H6     C6     .      .
 3AS      O5     C6     .      .
 3AS      C8     C6     C14    .
 3AS      C14    C8     C13    .
 3AS      H14    C14    .      .
 3AS      C13    C14    C11    .
 3AS      H13    C13    .      .
 3AS      C11    C13    C10    .
 3AS      O12    C11    H12    .
 3AS      H12    O12    .      .
 3AS      C10    C11    C9     .
 3AS      H10    C10    .      .
 3AS      C9     C10    H9     .
 3AS      H9     C9     .      END
 3AS      C1     C2     .    ADD
 3AS      C4     O5     .    ADD
 3AS      C8     C9     .    ADD
 3AS      C15    C17    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 3AS      C21    C22       single      1.524    0.020
 3AS      C17    C21       single      1.524    0.020
 3AS      C22    F24       single      1.320    0.020
 3AS      F23    C22       single      1.320    0.020
 3AS      C25    C22       single      1.524    0.020
 3AS      O29    C1        single      1.362    0.020
 3AS      C1     C20       double      1.390    0.020
 3AS      C20    C19       single      1.390    0.020
 3AS      C19    C17       single      1.480    0.020
 3AS      C15    C17       single      1.524    0.020
 3AS      C1     C2        single      1.390    0.020
 3AS      C4     C19       double      1.487    0.020
 3AS      C15    C25       single      1.524    0.020
 3AS      C6     C15       single      1.524    0.020
 3AS      C2     C3        double      1.390    0.020
 3AS      C3     C4        single      1.487    0.020
 3AS      C4     O5        single      1.370    0.020
 3AS      O5     C6        single      1.426    0.020
 3AS      C8     C6        single      1.480    0.020
 3AS      C26    C3        single      1.511    0.020
 3AS      C14    C8        double      1.390    0.020
 3AS      C13    C14       single      1.390    0.020
 3AS      C8     C9        single      1.390    0.020
 3AS      C11    C13       double      1.390    0.020
 3AS      O27    C26       single      1.426    0.020
 3AS      C9     C10       double      1.390    0.020
 3AS      C28    O27       single      1.426    0.020
 3AS      C10    C11       single      1.390    0.020
 3AS      O12    C11       single      1.362    0.020
 3AS      H2     C2        single      1.083    0.020
 3AS      H6     C6        single      1.099    0.020
 3AS      H9     C9        single      1.083    0.020
 3AS      H10    C10       single      1.083    0.020
 3AS      H12    O12       single      0.967    0.020
 3AS      H13    C13       single      1.083    0.020
 3AS      H14    C14       single      1.083    0.020
 3AS      H15    C15       single      1.099    0.020
 3AS      H17    C17       single      1.099    0.020
 3AS      H20    C20       single      1.083    0.020
 3AS      H211   C21       single      1.092    0.020
 3AS      H212   C21       single      1.092    0.020
 3AS      H251   C25       single      1.092    0.020
 3AS      H252   C25       single      1.092    0.020
 3AS      H261   C26       single      1.092    0.020
 3AS      H262   C26       single      1.092    0.020
 3AS      H281   C28       single      1.059    0.020
 3AS      H282   C28       single      1.059    0.020
 3AS      H283   C28       single      1.059    0.020
 3AS      H29    O29       single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 3AS      F24    C22    F23     109.470    3.000
 3AS      F24    C22    C21     109.470    3.000
 3AS      F24    C22    C25     109.470    3.000
 3AS      F23    C22    C21     109.470    3.000
 3AS      F23    C22    C25     109.470    3.000
 3AS      C21    C22    C25     111.000    3.000
 3AS      C22    C21    H211    109.470    3.000
 3AS      C22    C21    H212    109.470    3.000
 3AS      C22    C21    C17     111.000    3.000
 3AS      H211   C21    H212    107.900    3.000
 3AS      H211   C21    C17     109.470    3.000
 3AS      H212   C21    C17     109.470    3.000
 3AS      C21    C17    H17     108.340    3.000
 3AS      C21    C17    C19     109.470    3.000
 3AS      C21    C17    C15     111.000    3.000
 3AS      H17    C17    C19     109.470    3.000
 3AS      H17    C17    C15     108.340    3.000
 3AS      C19    C17    C15     109.470    3.000
 3AS      C17    C19    C4      120.000    3.000
 3AS      C17    C19    C20     120.000    3.000
 3AS      C4     C19    C20     120.000    3.000
 3AS      C19    C4     C3      120.000    3.000
 3AS      C19    C4     O5      120.000    3.000
 3AS      C3     C4     O5      120.000    3.000
 3AS      C4     C3     C26     120.000    3.000
 3AS      C4     C3     C2      120.000    3.000
 3AS      C26    C3     C2      120.000    3.000
 3AS      C3     C26    H261    109.470    3.000
 3AS      C3     C26    H262    109.470    3.000
 3AS      C3     C26    O27     109.470    3.000
 3AS      H261   C26    H262    107.900    3.000
 3AS      H261   C26    O27     109.470    3.000
 3AS      H262   C26    O27     109.470    3.000
 3AS      C26    O27    C28     111.800    3.000
 3AS      O27    C28    H283    109.470    3.000
 3AS      O27    C28    H282    109.470    3.000
 3AS      O27    C28    H281    109.470    3.000
 3AS      H283   C28    H282    109.470    3.000
 3AS      H283   C28    H281    109.470    3.000
 3AS      H282   C28    H281    109.470    3.000
 3AS      C3     C2     H2      120.000    3.000
 3AS      C3     C2     C1      120.000    3.000
 3AS      H2     C2     C1      120.000    3.000
 3AS      C19    C20    H20     120.000    3.000
 3AS      C19    C20    C1      120.000    3.000
 3AS      H20    C20    C1      120.000    3.000
 3AS      C20    C1     O29     120.000    3.000
 3AS      C20    C1     C2      120.000    3.000
 3AS      O29    C1     C2      120.000    3.000
 3AS      C1     O29    H29     109.470    3.000
 3AS      C22    C25    H251    109.470    3.000
 3AS      C22    C25    H252    109.470    3.000
 3AS      C22    C25    C15     111.000    3.000
 3AS      H251   C25    H252    107.900    3.000
 3AS      H251   C25    C15     109.470    3.000
 3AS      H252   C25    C15     109.470    3.000
 3AS      C25    C15    H15     108.340    3.000
 3AS      C25    C15    C6      111.000    3.000
 3AS      C25    C15    C17     111.000    3.000
 3AS      H15    C15    C6      108.340    3.000
 3AS      H15    C15    C17     108.340    3.000
 3AS      C6     C15    C17     111.000    3.000
 3AS      C15    C6     H6      108.340    3.000
 3AS      C15    C6     O5      109.470    3.000
 3AS      C15    C6     C8      109.470    3.000
 3AS      H6     C6     O5      109.470    3.000
 3AS      H6     C6     C8      109.470    3.000
 3AS      O5     C6     C8      109.470    3.000
 3AS      C6     O5     C4      120.000    3.000
 3AS      C6     C8     C14     120.000    3.000
 3AS      C6     C8     C9      120.000    3.000
 3AS      C14    C8     C9      120.000    3.000
 3AS      C8     C14    H14     120.000    3.000
 3AS      C8     C14    C13     120.000    3.000
 3AS      H14    C14    C13     120.000    3.000
 3AS      C14    C13    H13     120.000    3.000
 3AS      C14    C13    C11     120.000    3.000
 3AS      H13    C13    C11     120.000    3.000
 3AS      C13    C11    O12     120.000    3.000
 3AS      C13    C11    C10     120.000    3.000
 3AS      O12    C11    C10     120.000    3.000
 3AS      C11    O12    H12     109.470    3.000
 3AS      C11    C10    H10     120.000    3.000
 3AS      C11    C10    C9      120.000    3.000
 3AS      H10    C10    C9      120.000    3.000
 3AS      C10    C9     H9      120.000    3.000
 3AS      C10    C9     C8      120.000    3.000
 3AS      H9     C9     C8      120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 3AS      var_1    F24    C22    C21    C17     -120.000   20.000   1
 3AS      var_2    C22    C21    C17    C19      -90.000   20.000   3
 3AS      var_3    C21    C17    C19    C20      -60.000   20.000   1
 3AS      CONST_1  C17    C19    C4     C3       180.000    0.000   0
 3AS      var_4    C19    C4     O5     C6        30.000   20.000   1
 3AS      CONST_2  C19    C4     C3     C2         0.000    0.000   0
 3AS      var_5    C4     C3     C26    O27      179.989   20.000   2
 3AS      var_6    C3     C26    O27    C28      179.991   20.000   1
 3AS      var_7    C26    O27    C28    H281     -59.955   20.000   1
 3AS      CONST_3  C4     C3     C2     C1         0.000    0.000   0
 3AS      CONST_4  C17    C19    C20    C1       180.000    0.000   0
 3AS      CONST_5  C19    C20    C1     O29      180.000    0.000   0
 3AS      CONST_6  C20    C1     C2     C3         0.000    0.000   0
 3AS      var_8    C20    C1     O29    H29      -90.262   20.000   1
 3AS      var_9    F24    C22    C25    C15       90.000   20.000   1
 3AS      var_10   C22    C25    C15    C6       150.000   20.000   3
 3AS      var_11   C25    C15    C17    C21      -30.000   20.000   3
 3AS      var_12   C25    C15    C6     C8        60.000   20.000   3
 3AS      var_13   C15    C6     O5     C4       -60.000   20.000   1
 3AS      var_14   C15    C6     C8     C14      -80.192   20.000   1
 3AS      CONST_7  C6     C8     C9     C10      180.000    0.000   0
 3AS      CONST_8  C6     C8     C14    C13      180.000    0.000   0
 3AS      CONST_9  C8     C14    C13    C11        0.000    0.000   0
 3AS      CONST_10 C14    C13    C11    C10        0.000    0.000   0
 3AS      var_15   C13    C11    O12    H12      -90.005   20.000   1
 3AS      CONST_11 C13    C11    C10    C9         0.000    0.000   0
 3AS      CONST_12 C11    C10    C9     C8         0.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 3AS      chir_01  C6     O5     C8     C15       negativ
 3AS      chir_02  C15    C6     C17    C25       positiv
 3AS      chir_03  C17    C15    C19    C21       positiv
 3AS      chir_04  C22    C21    F23    F24       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 3AS      plan-1    C1        0.020
 3AS      plan-1    C2        0.020
 3AS      plan-1    C20       0.020
 3AS      plan-1    O29       0.020
 3AS      plan-1    C3        0.020
 3AS      plan-1    C4        0.020
 3AS      plan-1    C19       0.020
 3AS      plan-1    H2        0.020
 3AS      plan-1    C26       0.020
 3AS      plan-1    O5        0.020
 3AS      plan-1    C17       0.020
 3AS      plan-1    H20       0.020
 3AS      plan-2    C8        0.020
 3AS      plan-2    C6        0.020
 3AS      plan-2    C9        0.020
 3AS      plan-2    C14       0.020
 3AS      plan-2    C10       0.020
 3AS      plan-2    C11       0.020
 3AS      plan-2    C13       0.020
 3AS      plan-2    H9        0.020
 3AS      plan-2    H10       0.020
 3AS      plan-2    O12       0.020
 3AS      plan-2    H13       0.020
 3AS      plan-2    H14       0.020
# ------------------------------------------------------