File: 74M.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (430 lines) | stat: -rw-r--r-- 19,934 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
74M      74M '"METHYL N-({(2S,3S)-3-[(PROPYLAMINO)' non-polymer        59  28 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_74M
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 74M           O2     O    O         0.000      0.000    0.000    0.000
 74M           C10    C    C         0.000     -1.164   -0.148   -0.306
 74M           N3     N    NH1       0.000     -1.529   -1.183   -1.090
 74M           HN3    H    H         0.000     -2.498   -1.307   -1.345
 74M           C11    C    CH2       0.000     -0.518   -2.128   -1.571
 74M           H111   H    H         0.000     -0.027   -2.601   -0.718
 74M           H112   H    H         0.000      0.225   -1.594   -2.166
 74M           C12    C    CH2       0.000     -1.190   -3.198   -2.433
 74M           H121   H    H         0.000     -1.681   -2.723   -3.285
 74M           H122   H    H         0.000     -1.933   -3.731   -1.837
 74M           C13    C    CH3       0.000     -0.135   -4.185   -2.936
 74M           H133   H    H         0.000      0.344   -4.647   -2.110
 74M           H132   H    H         0.000     -0.598   -4.929   -3.533
 74M           H131   H    H         0.000      0.588   -3.670   -3.516
 74M           C2     C    CH1       0.000     -2.204    0.824    0.189
 74M           H2     H    H         0.000     -2.797    0.515    1.061
 74M           C3     C    CH1       0.000     -2.905    1.706   -0.845
 74M           H3     H    H         0.000     -2.596    1.582   -1.893
 74M           O1     O    O2        0.000     -1.925    2.220    0.061
 74M           C4     C    C         0.000     -4.347    2.068   -0.600
 74M           O4     O    O         0.000     -4.651    3.217   -0.356
 74M           N1     N    NH1       0.000     -5.300    1.116   -0.650
 74M           HN1    H    H         0.000     -5.050    0.163   -0.874
 74M           C5     C    CH1       0.000     -6.697    1.462   -0.378
 74M           H5     H    H         0.000     -6.736    2.380    0.225
 74M           C14    C    CH1       0.000     -7.432    1.688   -1.699
 74M           H14    H    H         0.000     -8.513    1.564   -1.542
 74M           C15    C    CH3       0.000     -7.150    3.104   -2.206
 74M           H153   H    H         0.000     -7.739    3.298   -3.064
 74M           H152   H    H         0.000     -7.389    3.805   -1.448
 74M           H151   H    H         0.000     -6.124    3.193   -2.455
 74M           C16    C    CH2       0.000     -6.948    0.670   -2.734
 74M           H161   H    H         0.000     -5.859    0.710   -2.801
 74M           H162   H    H         0.000     -7.381    0.909   -3.708
 74M           C17    C    CH3       0.000     -7.383   -0.734   -2.312
 74M           H173   H    H         0.000     -6.818   -1.045   -1.470
 74M           H172   H    H         0.000     -8.413   -0.728   -2.059
 74M           H171   H    H         0.000     -7.223   -1.413   -3.110
 74M           C6     C    C         0.000     -7.355    0.336    0.378
 74M           O5     O    O         0.000     -6.810   -0.745    0.452
 74M           N2     N    N         0.000     -8.549    0.530    0.971
 74M           C18    C    CH2       0.000     -9.398    1.727    0.822
 74M           H181   H    H         0.000    -10.039    1.660   -0.059
 74M           H182   H    H         0.000     -8.802    2.640    0.768
 74M           C19    C    CH2       0.000    -10.273    1.753    2.100
 74M           H191   H    H         0.000    -11.221    2.277    1.962
 74M           H192   H    H         0.000     -9.755    2.165    2.969
 74M           C20    C    CH2       0.000    -10.542    0.242    2.324
 74M           H201   H    H         0.000    -11.368   -0.131    1.714
 74M           H202   H    H         0.000    -10.729    0.001    3.373
 74M           C7     C    CH1       0.000     -9.224   -0.419    1.869
 74M           H7     H    H         0.000     -8.589   -0.622    2.742
 74M           C8     C    C         0.000     -9.520   -1.705    1.142
 74M           O6     O    O        -0.500     -9.329   -1.785   -0.091
 74M           O7     O    O2       -0.500     -9.956   -2.693    1.773
 74M           C9     C    CH3       0.000    -10.273   -4.006    1.119
 74M           H93    H    H         0.000     -9.399   -4.418    0.671
 74M           H92    H    H         0.000    -10.644   -4.699    1.838
 74M           H91    H    H         0.000    -11.012   -3.875    0.363
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 74M      O2     n/a    C10    START
 74M      C10    O2     C2     .
 74M      N3     C10    C11    .
 74M      HN3    N3     .      .
 74M      C11    N3     C12    .
 74M      H111   C11    .      .
 74M      H112   C11    .      .
 74M      C12    C11    C13    .
 74M      H121   C12    .      .
 74M      H122   C12    .      .
 74M      C13    C12    H131   .
 74M      H133   C13    .      .
 74M      H132   C13    .      .
 74M      H131   C13    .      .
 74M      C2     C10    C3     .
 74M      H2     C2     .      .
 74M      C3     C2     C4     .
 74M      H3     C3     .      .
 74M      O1     C3     .      .
 74M      C4     C3     N1     .
 74M      O4     C4     .      .
 74M      N1     C4     C5     .
 74M      HN1    N1     .      .
 74M      C5     N1     C6     .
 74M      H5     C5     .      .
 74M      C14    C5     C16    .
 74M      H14    C14    .      .
 74M      C15    C14    H151   .
 74M      H153   C15    .      .
 74M      H152   C15    .      .
 74M      H151   C15    .      .
 74M      C16    C14    C17    .
 74M      H161   C16    .      .
 74M      H162   C16    .      .
 74M      C17    C16    H171   .
 74M      H173   C17    .      .
 74M      H172   C17    .      .
 74M      H171   C17    .      .
 74M      C6     C5     N2     .
 74M      O5     C6     .      .
 74M      N2     C6     C18    .
 74M      C18    N2     C19    .
 74M      H181   C18    .      .
 74M      H182   C18    .      .
 74M      C19    C18    C20    .
 74M      H191   C19    .      .
 74M      H192   C19    .      .
 74M      C20    C19    C7     .
 74M      H201   C20    .      .
 74M      H202   C20    .      .
 74M      C7     C20    C8     .
 74M      H7     C7     .      .
 74M      C8     C7     O7     .
 74M      O6     C8     .      .
 74M      O7     C8     C9     .
 74M      C9     O7     H91    .
 74M      H93    C9     .      .
 74M      H92    C9     .      .
 74M      H91    C9     .      END
 74M      C2     O1     .    ADD
 74M      N2     C7     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 74M      C2     O1        single      1.426    0.020
 74M      C3     C2        single      1.524    0.020
 74M      C2     C10       single      1.500    0.020
 74M      H2     C2        single      1.099    0.020
 74M      O1     C3        single      1.426    0.020
 74M      C4     C3        single      1.500    0.020
 74M      H3     C3        single      1.099    0.020
 74M      O4     C4        double      1.220    0.020
 74M      N1     C4        single      1.330    0.020
 74M      C5     N1        single      1.450    0.020
 74M      HN1    N1        single      1.010    0.020
 74M      C6     C5        single      1.500    0.020
 74M      C14    C5        single      1.524    0.020
 74M      H5     C5        single      1.099    0.020
 74M      O5     C6        double      1.220    0.020
 74M      N2     C6        single      1.330    0.020
 74M      C16    C14       single      1.524    0.020
 74M      C15    C14       single      1.524    0.020
 74M      H14    C14       single      1.099    0.020
 74M      C17    C16       single      1.513    0.020
 74M      H161   C16       single      1.092    0.020
 74M      H162   C16       single      1.092    0.020
 74M      H151   C15       single      1.059    0.020
 74M      H152   C15       single      1.059    0.020
 74M      H153   C15       single      1.059    0.020
 74M      H171   C17       single      1.059    0.020
 74M      H172   C17       single      1.059    0.020
 74M      H173   C17       single      1.059    0.020
 74M      N2     C7        single      1.455    0.020
 74M      C18    N2        single      1.455    0.020
 74M      C8     C7        single      1.500    0.020
 74M      C7     C20       single      1.524    0.020
 74M      H7     C7        single      1.099    0.020
 74M      O6     C8        deloc       1.220    0.020
 74M      O7     C8        deloc       1.454    0.020
 74M      C20    C19       single      1.524    0.020
 74M      H201   C20       single      1.092    0.020
 74M      H202   C20       single      1.092    0.020
 74M      C19    C18       single      1.524    0.020
 74M      H191   C19       single      1.092    0.020
 74M      H192   C19       single      1.092    0.020
 74M      H181   C18       single      1.092    0.020
 74M      H182   C18       single      1.092    0.020
 74M      C9     O7        single      1.426    0.020
 74M      H91    C9        single      1.059    0.020
 74M      H92    C9        single      1.059    0.020
 74M      H93    C9        single      1.059    0.020
 74M      C11    N3        single      1.450    0.020
 74M      N3     C10       single      1.330    0.020
 74M      HN3    N3        single      1.010    0.020
 74M      C12    C11       single      1.524    0.020
 74M      H111   C11       single      1.092    0.020
 74M      H112   C11       single      1.092    0.020
 74M      C13    C12       single      1.513    0.020
 74M      H121   C12       single      1.092    0.020
 74M      H122   C12       single      1.092    0.020
 74M      H131   C13       single      1.059    0.020
 74M      H132   C13       single      1.059    0.020
 74M      H133   C13       single      1.059    0.020
 74M      C10    O2        double      1.220    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 74M      O2     C10    N3      123.000    3.000
 74M      O2     C10    C2      120.500    3.000
 74M      N3     C10    C2      116.500    3.000
 74M      C10    N3     HN3     120.000    3.000
 74M      C10    N3     C11     121.500    3.000
 74M      HN3    N3     C11     118.500    3.000
 74M      N3     C11    H111    109.470    3.000
 74M      N3     C11    H112    109.470    3.000
 74M      N3     C11    C12     112.000    3.000
 74M      H111   C11    H112    107.900    3.000
 74M      H111   C11    C12     109.470    3.000
 74M      H112   C11    C12     109.470    3.000
 74M      C11    C12    H121    109.470    3.000
 74M      C11    C12    H122    109.470    3.000
 74M      C11    C12    C13     111.000    3.000
 74M      H121   C12    H122    107.900    3.000
 74M      H121   C12    C13     109.470    3.000
 74M      H122   C12    C13     109.470    3.000
 74M      C12    C13    H133    109.470    3.000
 74M      C12    C13    H132    109.470    3.000
 74M      C12    C13    H131    109.470    3.000
 74M      H133   C13    H132    109.470    3.000
 74M      H133   C13    H131    109.470    3.000
 74M      H132   C13    H131    109.470    3.000
 74M      C10    C2     H2      108.810    3.000
 74M      C10    C2     C3      109.470    3.000
 74M      C10    C2     O1      109.470    3.000
 74M      H2     C2     C3      108.340    3.000
 74M      H2     C2     O1      109.470    3.000
 74M      C3     C2     O1       57.699    3.000
 74M      C2     C3     H3      108.340    3.000
 74M      C2     C3     O1       57.699    3.000
 74M      C2     C3     C4      109.470    3.000
 74M      H3     C3     O1      109.470    3.000
 74M      H3     C3     C4      108.810    3.000
 74M      O1     C3     C4      109.470    3.000
 74M      C3     O1     C2       64.601    3.000
 74M      C3     C4     O4      120.500    3.000
 74M      C3     C4     N1      116.500    3.000
 74M      O4     C4     N1      123.000    3.000
 74M      C4     N1     HN1     120.000    3.000
 74M      C4     N1     C5      121.500    3.000
 74M      HN1    N1     C5      118.500    3.000
 74M      N1     C5     H5      108.550    3.000
 74M      N1     C5     C14     110.000    3.000
 74M      N1     C5     C6      111.600    3.000
 74M      H5     C5     C14     108.340    3.000
 74M      H5     C5     C6      108.810    3.000
 74M      C14    C5     C6      109.470    3.000
 74M      C5     C14    H14     108.340    3.000
 74M      C5     C14    C15     111.000    3.000
 74M      C5     C14    C16     111.000    3.000
 74M      H14    C14    C15     108.340    3.000
 74M      H14    C14    C16     108.340    3.000
 74M      C15    C14    C16     111.000    3.000
 74M      C14    C15    H153    109.470    3.000
 74M      C14    C15    H152    109.470    3.000
 74M      C14    C15    H151    109.470    3.000
 74M      H153   C15    H152    109.470    3.000
 74M      H153   C15    H151    109.470    3.000
 74M      H152   C15    H151    109.470    3.000
 74M      C14    C16    H161    109.470    3.000
 74M      C14    C16    H162    109.470    3.000
 74M      C14    C16    C17     111.000    3.000
 74M      H161   C16    H162    107.900    3.000
 74M      H161   C16    C17     109.470    3.000
 74M      H162   C16    C17     109.470    3.000
 74M      C16    C17    H173    109.470    3.000
 74M      C16    C17    H172    109.470    3.000
 74M      C16    C17    H171    109.470    3.000
 74M      H173   C17    H172    109.470    3.000
 74M      H173   C17    H171    109.470    3.000
 74M      H172   C17    H171    109.470    3.000
 74M      C5     C6     O5      120.500    3.000
 74M      C5     C6     N2      116.500    3.000
 74M      O5     C6     N2      123.000    3.000
 74M      C6     N2     C18     127.000    3.000
 74M      C6     N2     C7      121.000    3.000
 74M      C18    N2     C7      112.000    3.000
 74M      N2     C18    H181    109.470    3.000
 74M      N2     C18    H182    109.470    3.000
 74M      N2     C18    C19     105.000    3.000
 74M      H181   C18    H182    107.900    3.000
 74M      H181   C18    C19     109.470    3.000
 74M      H182   C18    C19     109.470    3.000
 74M      C18    C19    H191    109.470    3.000
 74M      C18    C19    H192    109.470    3.000
 74M      C18    C19    C20     111.000    3.000
 74M      H191   C19    H192    107.900    3.000
 74M      H191   C19    C20     109.470    3.000
 74M      H192   C19    C20     109.470    3.000
 74M      C19    C20    H201    109.470    3.000
 74M      C19    C20    H202    109.470    3.000
 74M      C19    C20    C7      111.000    3.000
 74M      H201   C20    H202    107.900    3.000
 74M      H201   C20    C7      109.470    3.000
 74M      H202   C20    C7      109.470    3.000
 74M      C20    C7     H7      108.340    3.000
 74M      C20    C7     C8      109.470    3.000
 74M      C20    C7     N2      105.000    3.000
 74M      H7     C7     C8      108.810    3.000
 74M      H7     C7     N2      109.470    3.000
 74M      C8     C7     N2      111.600    3.000
 74M      C7     C8     O6      120.500    3.000
 74M      C7     C8     O7      120.000    3.000
 74M      O6     C8     O7      119.000    3.000
 74M      C8     O7     C9      120.000    3.000
 74M      O7     C9     H93     109.470    3.000
 74M      O7     C9     H92     109.470    3.000
 74M      O7     C9     H91     109.470    3.000
 74M      H93    C9     H92     109.470    3.000
 74M      H93    C9     H91     109.470    3.000
 74M      H92    C9     H91     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 74M      CONST_1  O2     C10    N3     C11        0.000    0.000   0
 74M      var_1    C10    N3     C11    C12      179.999   20.000   3
 74M      var_2    N3     C11    C12    C13      180.000   20.000   3
 74M      var_3    C11    C12    C13    H131     -60.055   20.000   3
 74M      var_4    O2     C10    C2     C3       113.643   20.000   3
 74M      var_5    C10    C2     O1     C3       106.846   20.000   1
 74M      var_6    C10    C2     C3     C4       146.333   20.000   3
 74M      var_7    C2     C3     C4     N1       -67.572   20.000   3
 74M      CONST_2  C3     C4     N1     C5       180.000    0.000   0
 74M      var_8    C4     N1     C5     C6      -142.929   20.000   3
 74M      var_9    N1     C5     C14    C16       38.442   20.000   3
 74M      var_10   C5     C14    C15    H151      66.024   20.000   3
 74M      var_11   C5     C14    C16    C17       66.883   20.000   3
 74M      var_12   C14    C16    C17    H171     168.804   20.000   3
 74M      var_13   N1     C5     C6     N2       166.631   20.000   3
 74M      CONST_3  C5     C6     N2     C18        0.000    0.000   0
 74M      var_14   C6     N2     C7     C20      180.000   20.000   3
 74M      var_15   C6     N2     C18    C19     -150.000   20.000   1
 74M      var_16   N2     C18    C19    C20      -30.000   20.000   3
 74M      var_17   C18    C19    C20    C7        30.000   20.000   3
 74M      var_18   C19    C20    C7     C8      -150.000   20.000   3
 74M      var_19   C20    C7     C8     O7       -70.013   20.000   3
 74M      var_20   C7     C8     O7     C9       179.991   20.000   1
 74M      var_21   C8     O7     C9     H91      -59.120   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 74M      chir_01  C2     O1     C3     C10       negativ
 74M      chir_02  C3     C2     O1     C4        positiv
 74M      chir_03  C5     N1     C6     C14       positiv
 74M      chir_04  C14    C5     C16    C15       positiv
 74M      chir_05  C7     N2     C8     C20       positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 74M      plan-1    C4        0.020
 74M      plan-1    C3        0.020
 74M      plan-1    O4        0.020
 74M      plan-1    N1        0.020
 74M      plan-1    HN1       0.020
 74M      plan-2    N1        0.020
 74M      plan-2    C4        0.020
 74M      plan-2    C5        0.020
 74M      plan-2    HN1       0.020
 74M      plan-3    C6        0.020
 74M      plan-3    C5        0.020
 74M      plan-3    O5        0.020
 74M      plan-3    N2        0.020
 74M      plan-4    N2        0.020
 74M      plan-4    C6        0.020
 74M      plan-4    C7        0.020
 74M      plan-4    C18       0.020
 74M      plan-5    C8        0.020
 74M      plan-5    C7        0.020
 74M      plan-5    O6        0.020
 74M      plan-5    O7        0.020
 74M      plan-6    N3        0.020
 74M      plan-6    C11       0.020
 74M      plan-6    C10       0.020
 74M      plan-6    HN3       0.020
 74M      plan-7    C10       0.020
 74M      plan-7    C2        0.020
 74M      plan-7    N3        0.020
 74M      plan-7    O2        0.020
 74M      plan-7    HN3       0.020
# ------------------------------------------------------