File: 7IG.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (364 lines) | stat: -rw-r--r-- 16,451 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
7IG      7IG '5-{4-[(3,5-DIFLUOROBENZYL)AMINO]PHEN' non-polymer        45  26 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_7IG
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 7IG           F2     F    F         0.000      0.000    0.000    0.000
 7IG           C17    C    CR6       0.000     -1.064    0.834    0.015
 7IG           C18    C    CR16      0.000     -0.906    2.162   -0.342
 7IG           H18    H    H         0.000      0.069    2.533   -0.633
 7IG           C13    C    CR6       0.000     -1.996    3.016   -0.327
 7IG           F1     F    F         0.000     -1.845    4.311   -0.675
 7IG           C16    C    CR16      0.000     -2.309    0.362    0.392
 7IG           H16    H    H         0.000     -2.431   -0.676    0.679
 7IG           C15    C    CR6       0.000     -3.397    1.213    0.402
 7IG           C14    C    CR16      0.000     -3.242    2.539    0.046
 7IG           H14    H    H         0.000     -4.095    3.206    0.059
 7IG           C19    C    CH2       0.000     -4.754    0.696    0.809
 7IG           H191   H    H         0.000     -5.326    1.503    1.271
 7IG           H192   H    H         0.000     -4.633   -0.119    1.525
 7IG           N5     N    NH1       0.000     -5.464    0.207   -0.376
 7IG           HN5    H    H         0.000     -5.024    0.253   -1.284
 7IG           C12    C    CR6       0.000     -6.750   -0.323   -0.248
 7IG           C7     C    CR16      0.000     -7.424   -0.786   -1.372
 7IG           H7     H    H         0.000     -6.952   -0.736   -2.346
 7IG           C11    C    CR16      0.000     -7.355   -0.385    1.002
 7IG           H11    H    H         0.000     -6.827   -0.026    1.877
 7IG           C10    C    CR16      0.000     -8.626   -0.903    1.129
 7IG           H10    H    H         0.000     -9.100   -0.944    2.102
 7IG           C9     C    CR6       0.000     -9.302   -1.374    0.004
 7IG           C8     C    CR16      0.000     -8.694   -1.310   -1.249
 7IG           H8     H    H         0.000     -9.218   -1.671   -2.125
 7IG           C4     C    CR6       0.000    -10.667   -1.936    0.137
 7IG           C1     C    CR6       0.000    -10.909   -3.307   -0.070
 7IG           N3     N    NH2       0.000     -9.873   -4.159   -0.412
 7IG           HN32   H    H         0.000     -8.927   -3.806   -0.513
 7IG           HN31   H    H         0.000    -10.049   -5.147   -0.567
 7IG           C3     C    CR6       0.000    -11.744   -1.123    0.485
 7IG           C5     C    CH2       0.000    -11.541    0.351    0.725
 7IG           H51    H    H         0.000    -10.515    0.527    1.056
 7IG           H52    H    H         0.000    -12.235    0.693    1.495
 7IG           C6     C    CH3       0.000    -11.798    1.119   -0.573
 7IG           H63    H    H         0.000    -12.765    0.886   -0.940
 7IG           H62    H    H         0.000    -11.736    2.162   -0.389
 7IG           H61    H    H         0.000    -11.073    0.848   -1.298
 7IG           N2     N    NRD6      0.000    -12.948   -1.661    0.596
 7IG           C2     C    CR6       0.000    -13.141   -2.955    0.387
 7IG           N1     N    NRD6      0.000    -12.147   -3.768    0.060
 7IG           N4     N    NH2       0.000    -14.418   -3.473    0.514
 7IG           HN42   H    H         0.000    -14.591   -4.462    0.360
 7IG           HN41   H    H         0.000    -15.197   -2.871    0.763
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 7IG      F2     n/a    C17    START
 7IG      C17    F2     C16    .
 7IG      C18    C17    C13    .
 7IG      H18    C18    .      .
 7IG      C13    C18    F1     .
 7IG      F1     C13    .      .
 7IG      C16    C17    C15    .
 7IG      H16    C16    .      .
 7IG      C15    C16    C19    .
 7IG      C14    C15    H14    .
 7IG      H14    C14    .      .
 7IG      C19    C15    N5     .
 7IG      H191   C19    .      .
 7IG      H192   C19    .      .
 7IG      N5     C19    C12    .
 7IG      HN5    N5     .      .
 7IG      C12    N5     C11    .
 7IG      C7     C12    H7     .
 7IG      H7     C7     .      .
 7IG      C11    C12    C10    .
 7IG      H11    C11    .      .
 7IG      C10    C11    C9     .
 7IG      H10    C10    .      .
 7IG      C9     C10    C4     .
 7IG      C8     C9     H8     .
 7IG      H8     C8     .      .
 7IG      C4     C9     C3     .
 7IG      C1     C4     N3     .
 7IG      N3     C1     HN31   .
 7IG      HN32   N3     .      .
 7IG      HN31   N3     .      .
 7IG      C3     C4     N2     .
 7IG      C5     C3     C6     .
 7IG      H51    C5     .      .
 7IG      H52    C5     .      .
 7IG      C6     C5     H61    .
 7IG      H63    C6     .      .
 7IG      H62    C6     .      .
 7IG      H61    C6     .      .
 7IG      N2     C3     C2     .
 7IG      C2     N2     N4     .
 7IG      N1     C2     .      .
 7IG      N4     C2     HN41   .
 7IG      HN42   N4     .      .
 7IG      HN41   N4     .      END
 7IG      C1     N1     .    ADD
 7IG      C7     C8     .    ADD
 7IG      C13    C14    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 7IG      C1     N1        double      1.350    0.020
 7IG      C1     C4        single      1.487    0.020
 7IG      N3     C1        single      1.355    0.020
 7IG      N1     C2        single      1.350    0.020
 7IG      C2     N2        double      1.350    0.020
 7IG      N4     C2        single      1.355    0.020
 7IG      N2     C3        single      1.350    0.020
 7IG      C3     C4        double      1.487    0.020
 7IG      C5     C3        single      1.511    0.020
 7IG      C4     C9        single      1.487    0.020
 7IG      HN31   N3        single      1.010    0.020
 7IG      HN32   N3        single      1.010    0.020
 7IG      HN41   N4        single      1.010    0.020
 7IG      HN42   N4        single      1.010    0.020
 7IG      C6     C5        single      1.513    0.020
 7IG      H51    C5        single      1.092    0.020
 7IG      H52    C5        single      1.092    0.020
 7IG      H61    C6        single      1.059    0.020
 7IG      H62    C6        single      1.059    0.020
 7IG      H63    C6        single      1.059    0.020
 7IG      C7     C8        single      1.390    0.020
 7IG      C7     C12       double      1.390    0.020
 7IG      H7     C7        single      1.083    0.020
 7IG      C8     C9        double      1.390    0.020
 7IG      H8     C8        single      1.083    0.020
 7IG      C9     C10       single      1.390    0.020
 7IG      C10    C11       double      1.390    0.020
 7IG      H10    C10       single      1.083    0.020
 7IG      C11    C12       single      1.390    0.020
 7IG      H11    C11       single      1.083    0.020
 7IG      C12    N5        single      1.350    0.020
 7IG      N5     C19       single      1.450    0.020
 7IG      HN5    N5        single      1.010    0.020
 7IG      C13    C14       single      1.390    0.020
 7IG      C13    C18       double      1.390    0.020
 7IG      F1     C13       single      1.345    0.020
 7IG      C14    C15       double      1.390    0.020
 7IG      H14    C14       single      1.083    0.020
 7IG      C15    C16       single      1.390    0.020
 7IG      C19    C15       single      1.511    0.020
 7IG      C16    C17       double      1.390    0.020
 7IG      H16    C16       single      1.083    0.020
 7IG      C18    C17       single      1.390    0.020
 7IG      C17    F2        single      1.345    0.020
 7IG      H18    C18       single      1.083    0.020
 7IG      H191   C19       single      1.092    0.020
 7IG      H192   C19       single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 7IG      F2     C17    C18     120.000    3.000
 7IG      F2     C17    C16     120.000    3.000
 7IG      C18    C17    C16     120.000    3.000
 7IG      C17    C18    H18     120.000    3.000
 7IG      C17    C18    C13     120.000    3.000
 7IG      H18    C18    C13     120.000    3.000
 7IG      C18    C13    F1      120.000    3.000
 7IG      C18    C13    C14     120.000    3.000
 7IG      F1     C13    C14     120.000    3.000
 7IG      C17    C16    H16     120.000    3.000
 7IG      C17    C16    C15     120.000    3.000
 7IG      H16    C16    C15     120.000    3.000
 7IG      C16    C15    C14     120.000    3.000
 7IG      C16    C15    C19     120.000    3.000
 7IG      C14    C15    C19     120.000    3.000
 7IG      C15    C14    H14     120.000    3.000
 7IG      C15    C14    C13     120.000    3.000
 7IG      H14    C14    C13     120.000    3.000
 7IG      C15    C19    H191    109.470    3.000
 7IG      C15    C19    H192    109.470    3.000
 7IG      C15    C19    N5      109.500    3.000
 7IG      H191   C19    H192    107.900    3.000
 7IG      H191   C19    N5      109.470    3.000
 7IG      H192   C19    N5      109.470    3.000
 7IG      C19    N5     HN5     118.500    3.000
 7IG      C19    N5     C12     120.000    3.000
 7IG      HN5    N5     C12     120.000    3.000
 7IG      N5     C12    C7      120.000    3.000
 7IG      N5     C12    C11     120.000    3.000
 7IG      C7     C12    C11     120.000    3.000
 7IG      C12    C7     H7      120.000    3.000
 7IG      C12    C7     C8      120.000    3.000
 7IG      H7     C7     C8      120.000    3.000
 7IG      C12    C11    H11     120.000    3.000
 7IG      C12    C11    C10     120.000    3.000
 7IG      H11    C11    C10     120.000    3.000
 7IG      C11    C10    H10     120.000    3.000
 7IG      C11    C10    C9      120.000    3.000
 7IG      H10    C10    C9      120.000    3.000
 7IG      C10    C9     C8      120.000    3.000
 7IG      C10    C9     C4      120.000    3.000
 7IG      C8     C9     C4      120.000    3.000
 7IG      C9     C8     H8      120.000    3.000
 7IG      C9     C8     C7      120.000    3.000
 7IG      H8     C8     C7      120.000    3.000
 7IG      C9     C4     C1      120.000    3.000
 7IG      C9     C4     C3      120.000    3.000
 7IG      C1     C4     C3      120.000    3.000
 7IG      C4     C1     N3      120.000    3.000
 7IG      C4     C1     N1      120.000    3.000
 7IG      N3     C1     N1      120.000    3.000
 7IG      C1     N3     HN32    120.000    3.000
 7IG      C1     N3     HN31    120.000    3.000
 7IG      HN32   N3     HN31    120.000    3.000
 7IG      C4     C3     C5      120.000    3.000
 7IG      C4     C3     N2      120.000    3.000
 7IG      C5     C3     N2      120.000    3.000
 7IG      C3     C5     H51     109.470    3.000
 7IG      C3     C5     H52     109.470    3.000
 7IG      C3     C5     C6      109.500    3.000
 7IG      H51    C5     H52     107.900    3.000
 7IG      H51    C5     C6      109.470    3.000
 7IG      H52    C5     C6      109.470    3.000
 7IG      C5     C6     H63     109.470    3.000
 7IG      C5     C6     H62     109.470    3.000
 7IG      C5     C6     H61     109.470    3.000
 7IG      H63    C6     H62     109.470    3.000
 7IG      H63    C6     H61     109.470    3.000
 7IG      H62    C6     H61     109.470    3.000
 7IG      C3     N2     C2      120.000    3.000
 7IG      N2     C2     N1      120.000    3.000
 7IG      N2     C2     N4      120.000    3.000
 7IG      N1     C2     N4      120.000    3.000
 7IG      C2     N1     C1      120.000    3.000
 7IG      C2     N4     HN42    120.000    3.000
 7IG      C2     N4     HN41    120.000    3.000
 7IG      HN42   N4     HN41    120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 7IG      CONST_1  F2     C17    C18    C13      180.000    0.000   0
 7IG      CONST_2  C17    C18    C13    F1       180.000    0.000   0
 7IG      CONST_3  C18    C13    C14    C15        0.000    0.000   0
 7IG      CONST_4  F2     C17    C16    C15      180.000    0.000   0
 7IG      CONST_5  C17    C16    C15    C19      180.000    0.000   0
 7IG      CONST_6  C16    C15    C14    C13        0.000    0.000   0
 7IG      var_1    C16    C15    C19    N5       -90.257   20.000   2
 7IG      var_2    C15    C19    N5     C12      179.985   20.000   3
 7IG      var_3    C19    N5     C12    C11        0.039   20.000   1
 7IG      CONST_7  N5     C12    C7     C8       180.000    0.000   0
 7IG      CONST_8  C12    C7     C8     C9         0.000    0.000   0
 7IG      CONST_9  N5     C12    C11    C10      180.000    0.000   0
 7IG      CONST_10 C12    C11    C10    C9         0.000    0.000   0
 7IG      CONST_11 C11    C10    C9     C4       180.000    0.000   0
 7IG      CONST_12 C10    C9     C8     C7         0.000    0.000   0
 7IG      CONST_13 C10    C9     C4     C3         0.000    0.000   0
 7IG      CONST_14 C9     C4     C1     N3         0.000    0.000   0
 7IG      CONST_15 C4     C1     N1     C2         0.000    0.000   0
 7IG      CONST_16 C4     C1     N3     HN31    -179.697    0.000   0
 7IG      CONST_17 C9     C4     C3     N2       180.000    0.000   0
 7IG      var_4    C4     C3     C5     C6        93.013   20.000   2
 7IG      var_5    C3     C5     C6     H61      -64.743   20.000   3
 7IG      CONST_18 C4     C3     N2     C2         0.000    0.000   0
 7IG      CONST_19 C3     N2     C2     N4       180.000    0.000   0
 7IG      CONST_20 N2     C2     N1     C1         0.000    0.000   0
 7IG      CONST_21 N2     C2     N4     HN41       0.055    0.000   0
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 7IG      plan-1    C1        0.020
 7IG      plan-1    N1        0.020
 7IG      plan-1    C4        0.020
 7IG      plan-1    N3        0.020
 7IG      plan-1    C2        0.020
 7IG      plan-1    N2        0.020
 7IG      plan-1    C3        0.020
 7IG      plan-1    N4        0.020
 7IG      plan-1    C5        0.020
 7IG      plan-1    C9        0.020
 7IG      plan-1    HN32      0.020
 7IG      plan-1    HN31      0.020
 7IG      plan-1    HN42      0.020
 7IG      plan-1    HN41      0.020
 7IG      plan-2    N3        0.020
 7IG      plan-2    C1        0.020
 7IG      plan-2    HN31      0.020
 7IG      plan-2    HN32      0.020
 7IG      plan-3    N4        0.020
 7IG      plan-3    C2        0.020
 7IG      plan-3    HN41      0.020
 7IG      plan-3    HN42      0.020
 7IG      plan-4    C7        0.020
 7IG      plan-4    C8        0.020
 7IG      plan-4    C12       0.020
 7IG      plan-4    H7        0.020
 7IG      plan-4    C9        0.020
 7IG      plan-4    C10       0.020
 7IG      plan-4    C11       0.020
 7IG      plan-4    H8        0.020
 7IG      plan-4    C4        0.020
 7IG      plan-4    H10       0.020
 7IG      plan-4    H11       0.020
 7IG      plan-4    N5        0.020
 7IG      plan-4    HN5       0.020
 7IG      plan-5    N5        0.020
 7IG      plan-5    C12       0.020
 7IG      plan-5    C19       0.020
 7IG      plan-5    HN5       0.020
 7IG      plan-6    C13       0.020
 7IG      plan-6    C14       0.020
 7IG      plan-6    C18       0.020
 7IG      plan-6    F1        0.020
 7IG      plan-6    C15       0.020
 7IG      plan-6    C16       0.020
 7IG      plan-6    C17       0.020
 7IG      plan-6    H14       0.020
 7IG      plan-6    C19       0.020
 7IG      plan-6    H16       0.020
 7IG      plan-6    F2        0.020
 7IG      plan-6    H18       0.020
# ------------------------------------------------------