File: A6P.cif

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global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
A6P      A6P '6-O-phosphono-alpha-D-allopyranose  ' non-polymer        27  16 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_A6P
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 A6P           O3P    O    OP       -0.666      0.000    0.000    0.000
 A6P           P      P    P         0.000     -1.027   -0.964   -0.553
 A6P           O1P    O    OP       -0.666     -0.788   -2.341    0.027
 A6P           O2P    O    OP       -0.666     -0.903   -1.022   -2.060
 A6P           O6     O    O2        0.000     -2.503   -0.461   -0.155
 A6P           C6     C    CH2       0.000     -3.694   -1.102   -0.617
 A6P           H6C1   H    H         0.000     -3.701   -2.141   -0.282
 A6P           H6C2   H    H         0.000     -3.722   -1.073   -1.708
 A6P           C5     C    CH1       0.000     -4.917   -0.374   -0.054
 A6P           H5     H    H         0.000     -4.842   -0.326    1.042
 A6P           O5     O    O2        0.000     -4.970    0.950   -0.586
 A6P           C1     C    CH1       0.000     -6.065    1.730   -0.102
 A6P           H1     H    H         0.000     -6.021    2.736   -0.542
 A6P           O1     O    OH1       0.000     -5.987    1.829    1.321
 A6P           HA     H    H         0.000     -5.155    2.254    1.569
 A6P           C4     C    CH1       0.000     -6.188   -1.131   -0.446
 A6P           H4     H    H         0.000     -6.242   -1.216   -1.540
 A6P           O4     O    OH1       0.000     -6.164   -2.438    0.134
 A6P           HD     H    H         0.000     -6.969   -2.914   -0.111
 A6P           C3     C    CH1       0.000     -7.410   -0.366    0.070
 A6P           H3     H    H         0.000     -8.328   -0.874   -0.256
 A6P           O3     O    OH1       0.000     -7.372   -0.312    1.498
 A6P           HC     H    H         0.000     -8.140    0.178    1.822
 A6P           C2     C    CH1       0.000     -7.382    1.058   -0.495
 A6P           H2     H    H         0.000     -7.461    1.019   -1.591
 A6P           O2     O    OH1       0.000     -8.478    1.804    0.036
 A6P           HB     H    H         0.000     -8.456    2.703   -0.319
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 A6P      O3P    n/a    P      START
 A6P      P      O3P    O6     .
 A6P      O1P    P      .      .
 A6P      O2P    P      .      .
 A6P      O6     P      C6     .
 A6P      C6     O6     C5     .
 A6P      H6C1   C6     .      .
 A6P      H6C2   C6     .      .
 A6P      C5     C6     C4     .
 A6P      H5     C5     .      .
 A6P      O5     C5     C1     .
 A6P      C1     O5     O1     .
 A6P      H1     C1     .      .
 A6P      O1     C1     HA     .
 A6P      HA     O1     .      .
 A6P      C4     C5     C3     .
 A6P      H4     C4     .      .
 A6P      O4     C4     HD     .
 A6P      HD     O4     .      .
 A6P      C3     C4     C2     .
 A6P      H3     C3     .      .
 A6P      O3     C3     HC     .
 A6P      HC     O3     .      .
 A6P      C2     C3     O2     .
 A6P      H2     C2     .      .
 A6P      O2     C2     HB     .
 A6P      HB     O2     .      END
 A6P      C1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 A6P      C1     C2        single      1.524    0.020
 A6P      O1     C1        single      1.432    0.020
 A6P      C1     O5        single      1.426    0.020
 A6P      C2     C3        single      1.524    0.020
 A6P      O2     C2        single      1.432    0.020
 A6P      C3     C4        single      1.524    0.020
 A6P      O3     C3        single      1.432    0.020
 A6P      C4     C5        single      1.524    0.020
 A6P      O4     C4        single      1.432    0.020
 A6P      C5     C6        single      1.524    0.020
 A6P      O5     C5        single      1.426    0.020
 A6P      C6     O6        single      1.426    0.020
 A6P      O6     P         single      1.610    0.020
 A6P      O1P    P         deloc       1.510    0.020
 A6P      O2P    P         deloc       1.510    0.020
 A6P      P      O3P       deloc       1.510    0.020
 A6P      H1     C1        single      1.099    0.020
 A6P      H2     C2        single      1.099    0.020
 A6P      HA     O1        single      0.967    0.020
 A6P      H3     C3        single      1.099    0.020
 A6P      HB     O2        single      0.967    0.020
 A6P      H4     C4        single      1.099    0.020
 A6P      HC     O3        single      0.967    0.020
 A6P      H5     C5        single      1.099    0.020
 A6P      HD     O4        single      0.967    0.020
 A6P      H6C1   C6        single      1.092    0.020
 A6P      H6C2   C6        single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 A6P      O3P    P      O1P     119.900    3.000
 A6P      O3P    P      O2P     119.900    3.000
 A6P      O3P    P      O6      108.200    3.000
 A6P      O1P    P      O2P     119.900    3.000
 A6P      O1P    P      O6      108.200    3.000
 A6P      O2P    P      O6      108.200    3.000
 A6P      P      O6     C6      120.500    3.000
 A6P      O6     C6     H6C1    109.470    3.000
 A6P      O6     C6     H6C2    109.470    3.000
 A6P      O6     C6     C5      109.470    3.000
 A6P      H6C1   C6     H6C2    107.900    3.000
 A6P      H6C1   C6     C5      109.470    3.000
 A6P      H6C2   C6     C5      109.470    3.000
 A6P      C6     C5     H5      108.340    3.000
 A6P      C6     C5     O5      109.470    3.000
 A6P      C6     C5     C4      111.000    3.000
 A6P      H5     C5     O5      109.470    3.000
 A6P      H5     C5     C4      108.340    3.000
 A6P      O5     C5     C4      109.470    3.000
 A6P      C5     O5     C1      111.800    3.000
 A6P      O5     C1     H1      109.470    3.000
 A6P      O5     C1     O1      109.470    3.000
 A6P      O5     C1     C2      109.470    3.000
 A6P      H1     C1     O1      109.470    3.000
 A6P      H1     C1     C2      108.340    3.000
 A6P      O1     C1     C2      109.470    3.000
 A6P      C1     O1     HA      109.470    3.000
 A6P      C5     C4     H4      108.340    3.000
 A6P      C5     C4     O4      109.470    3.000
 A6P      C5     C4     C3      111.000    3.000
 A6P      H4     C4     O4      109.470    3.000
 A6P      H4     C4     C3      108.340    3.000
 A6P      O4     C4     C3      109.470    3.000
 A6P      C4     O4     HD      109.470    3.000
 A6P      C4     C3     H3      108.340    3.000
 A6P      C4     C3     O3      109.470    3.000
 A6P      C4     C3     C2      111.000    3.000
 A6P      H3     C3     O3      109.470    3.000
 A6P      H3     C3     C2      108.340    3.000
 A6P      O3     C3     C2      109.470    3.000
 A6P      C3     O3     HC      109.470    3.000
 A6P      C3     C2     H2      108.340    3.000
 A6P      C3     C2     O2      109.470    3.000
 A6P      C3     C2     C1      111.000    3.000
 A6P      H2     C2     O2      109.470    3.000
 A6P      H2     C2     C1      108.340    3.000
 A6P      O2     C2     C1      109.470    3.000
 A6P      C2     O2     HB      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 A6P      var_1    O3P    P      O6     C6       175.046   20.000   1
 A6P      var_2    P      O6     C6     C5       179.997   20.000   1
 A6P      var_3    O6     C6     C5     C4      -175.025   20.000   3
 A6P      var_4    C6     C5     O5     C1       180.000   20.000   1
 A6P      var_5    C5     O5     C1     O1        60.000   20.000   1
 A6P      var_6    O5     C1     C2     C3        60.000   20.000   3
 A6P      var_7    O5     C1     O1     HA        60.014   20.000   1
 A6P      var_8    C6     C5     C4     C3       180.000   20.000   3
 A6P      var_9    C5     C4     O4     HD       179.690   20.000   1
 A6P      var_10   C5     C4     C3     C2        60.000   20.000   3
 A6P      var_11   C4     C3     O3     HC       179.520   20.000   1
 A6P      var_12   C4     C3     C2     O2       180.000   20.000   3
 A6P      var_13   C3     C2     O2     HB       179.716   20.000   1
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 A6P      chir_01  C1     C2     O1     O5        negativ
 A6P      chir_02  C2     C1     C3     O2        negativ
 A6P      chir_03  C3     C2     C4     O3        negativ
 A6P      chir_04  C4     C3     C5     O4        negativ
 A6P      chir_05  C5     C4     C6     O5        negativ
# ------------------------------------------------------