File: AEA.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (194 lines) | stat: -rw-r--r-- 7,687 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
AEA      AEA '(2-AMINO-2-CARBAMOYL-ETHYLSULFANYL)-' non-polymer        20  11 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_AEA
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 AEA           O2     O    OC       -0.500      0.000    0.000    0.000
 AEA           C5     C    C         0.000     -1.007    0.271   -0.691
 AEA           O1     O    OC       -0.500     -0.875    0.865   -1.784
 AEA           C4     C    CH2       0.000     -2.380   -0.120   -0.208
 AEA           H41    H    H         0.000     -2.579    0.363    0.751
 AEA           H42    H    H         0.000     -2.426   -1.204   -0.084
 AEA           S1     S    S2        0.000     -3.621    0.406   -1.420
 AEA           C3     C    CH2       0.000     -5.130   -0.176   -0.601
 AEA           H31    H    H         0.000     -5.225    0.310    0.372
 AEA           H32    H    H         0.000     -5.073   -1.258   -0.462
 AEA           C1     C    CH1       0.000     -6.344    0.166   -1.464
 AEA           H11    H    H         0.000     -6.400    1.255   -1.602
 AEA           N1     N    NH2       0.000     -6.215   -0.487   -2.774
 AEA           HN12   H    H         0.000     -5.365   -0.982   -3.017
 AEA           HN11   H    H         0.000     -6.975   -0.446   -3.443
 AEA           C2     C    C         0.000     -7.599   -0.317   -0.785
 AEA           O3     O    O         0.000     -8.014   -1.436   -1.003
 AEA           N2     N    NH2       0.000     -8.258    0.491    0.067
 AEA           HN22   H    H         0.000     -7.915    1.426    0.254
 AEA           HN21   H    H         0.000     -9.102    0.170    0.526
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 AEA      O2     n/a    C5     START
 AEA      C5     O2     C4     .
 AEA      O1     C5     .      .
 AEA      C4     C5     S1     .
 AEA      H41    C4     .      .
 AEA      H42    C4     .      .
 AEA      S1     C4     C3     .
 AEA      C3     S1     C1     .
 AEA      H31    C3     .      .
 AEA      H32    C3     .      .
 AEA      C1     C3     C2     .
 AEA      H11    C1     .      .
 AEA      N1     C1     HN11   .
 AEA      HN12   N1     .      .
 AEA      HN11   N1     .      .
 AEA      C2     C1     N2     .
 AEA      O3     C2     .      .
 AEA      N2     C2     HN21   .
 AEA      HN22   N2     .      .
 AEA      HN21   N2     .      END
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 AEA      N1     C1        single      1.450    0.020
 AEA      HN11   N1        single      1.010    0.020
 AEA      HN12   N1        single      1.010    0.020
 AEA      C1     C3        single      1.524    0.020
 AEA      C2     C1        single      1.500    0.020
 AEA      H11    C1        single      1.099    0.020
 AEA      C3     S1        single      1.762    0.020
 AEA      H31    C3        single      1.092    0.020
 AEA      H32    C3        single      1.092    0.020
 AEA      N2     C2        single      1.332    0.020
 AEA      O3     C2        double      1.220    0.020
 AEA      HN21   N2        single      1.010    0.020
 AEA      HN22   N2        single      1.010    0.020
 AEA      S1     C4        single      1.762    0.020
 AEA      C4     C5        single      1.510    0.020
 AEA      H41    C4        single      1.092    0.020
 AEA      H42    C4        single      1.092    0.020
 AEA      O1     C5        deloc       1.250    0.020
 AEA      C5     O2        deloc       1.250    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 AEA      O2     C5     O1      123.000    3.000
 AEA      O2     C5     C4      118.500    3.000
 AEA      O1     C5     C4      118.500    3.000
 AEA      C5     C4     H41     109.470    3.000
 AEA      C5     C4     H42     109.470    3.000
 AEA      C5     C4     S1      109.500    3.000
 AEA      H41    C4     H42     107.900    3.000
 AEA      H41    C4     S1      109.500    3.000
 AEA      H42    C4     S1      109.500    3.000
 AEA      C4     S1     C3      100.034    3.000
 AEA      S1     C3     H31     109.500    3.000
 AEA      S1     C3     H32     109.500    3.000
 AEA      S1     C3     C1      109.500    3.000
 AEA      H31    C3     H32     107.900    3.000
 AEA      H31    C3     C1      109.470    3.000
 AEA      H32    C3     C1      109.470    3.000
 AEA      C3     C1     H11     108.340    3.000
 AEA      C3     C1     N1      109.470    3.000
 AEA      C3     C1     C2      109.470    3.000
 AEA      H11    C1     N1      109.470    3.000
 AEA      H11    C1     C2      108.810    3.000
 AEA      N1     C1     C2      109.470    3.000
 AEA      C1     N1     HN12    120.000    3.000
 AEA      C1     N1     HN11    120.000    3.000
 AEA      HN12   N1     HN11    120.000    3.000
 AEA      C1     C2     O3      120.500    3.000
 AEA      C1     C2     N2      120.000    3.000
 AEA      O3     C2     N2      123.000    3.000
 AEA      C2     N2     HN22    120.000    3.000
 AEA      C2     N2     HN21    120.000    3.000
 AEA      HN22   N2     HN21    120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 AEA      var_1    O2     C5     C4     S1      -179.982   20.000   3
 AEA      var_2    C5     C4     S1     C3      -179.945   20.000   1
 AEA      var_3    C4     S1     C3     C1      -179.974   20.000   1
 AEA      var_4    S1     C3     C1     C2       179.987   20.000   3
 AEA      var_5    C3     C1     N1     HN11     173.838   20.000   1
 AEA      var_6    C3     C1     C2     N2        89.883   20.000   3
 AEA      CONST_1  C1     C2     N2     HN21     180.000    0.000   0
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 AEA      chir_01  C1     N1     C3     C2        positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 AEA      plan-1    N1        0.020
 AEA      plan-1    C1        0.020
 AEA      plan-1    HN11      0.020
 AEA      plan-1    HN12      0.020
 AEA      plan-2    C2        0.020
 AEA      plan-2    C1        0.020
 AEA      plan-2    N2        0.020
 AEA      plan-2    O3        0.020
 AEA      plan-2    HN22      0.020
 AEA      plan-2    HN21      0.020
 AEA      plan-3    N2        0.020
 AEA      plan-3    C2        0.020
 AEA      plan-3    HN21      0.020
 AEA      plan-3    HN22      0.020
 AEA      plan-4    C5        0.020
 AEA      plan-4    C4        0.020
 AEA      plan-4    O1        0.020
 AEA      plan-4    O2        0.020
# ------------------------------------------------------