File: AZ2.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (379 lines) | stat: -rw-r--r-- 17,359 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
AZ2      AZ2 '"(2S)-2-ETHOXY-3-[4-(2-{4-[(METHYLSU' non-polymer        51  28 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_AZ2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 AZ2           O52    O    OS        0.000      0.000    0.000    0.000
 AZ2           S46    S    ST        0.000      0.140    0.737    1.206
 AZ2           O51    O    OS        0.000      0.859    0.229    2.321
 AZ2           C47    C    CH3       0.000      0.543    2.475    0.886
 AZ2           H473   H    H         0.000     -0.124    2.898    0.164
 AZ2           H472   H    H         0.000      0.471    3.059    1.780
 AZ2           H471   H    H         0.000      1.539    2.576    0.509
 AZ2           O45    O    O2        0.000     -1.288    0.801    1.728
 AZ2           C40    C    CR6       0.000     -2.106    0.699    0.648
 AZ2           C38    C    CR16      0.000     -2.536   -0.548    0.216
 AZ2           H381   H    H         0.000     -2.219   -1.441    0.741
 AZ2           C36    C    CR16      0.000     -3.366   -0.650   -0.882
 AZ2           H361   H    H         0.000     -3.701   -1.623   -1.219
 AZ2           C41    C    CR16      0.000     -2.514    1.840   -0.026
 AZ2           H411   H    H         0.000     -2.183    2.816    0.310
 AZ2           C43    C    CR16      0.000     -3.341    1.733   -1.127
 AZ2           H431   H    H         0.000     -3.653    2.623   -1.658
 AZ2           C35    C    CR6       0.000     -3.771    0.489   -1.552
 AZ2           C32    C    CH2       0.000     -4.678    0.375   -2.750
 AZ2           H321   H    H         0.000     -4.493   -0.574   -3.257
 AZ2           H322   H    H         0.000     -4.477    1.200   -3.437
 AZ2           C29    C    CH2       0.000     -6.137    0.434   -2.292
 AZ2           H291   H    H         0.000     -6.321    1.383   -1.784
 AZ2           H292   H    H         0.000     -6.336   -0.390   -1.604
 AZ2           O28    O    O2        0.000     -6.996    0.327   -3.429
 AZ2           C23    C    CR6       0.000     -8.271    0.385   -2.963
 AZ2           C21    C    CR16      0.000     -9.337    0.305   -3.846
 AZ2           H211   H    H         0.000     -9.155    0.195   -4.908
 AZ2           C19    C    CR16      0.000    -10.633    0.365   -3.370
 AZ2           H191   H    H         0.000    -11.466    0.302   -4.059
 AZ2           C24    C    CR16      0.000     -8.509    0.526   -1.604
 AZ2           H241   H    H         0.000     -7.678    0.584   -0.911
 AZ2           C26    C    CR16      0.000     -9.805    0.591   -1.133
 AZ2           H261   H    H         0.000     -9.991    0.710   -0.073
 AZ2           C1     C    CR6       0.000    -10.867    0.505   -2.014
 AZ2           C2     C    CH2       0.000    -12.282    0.570   -1.499
 AZ2           H21    H    H         0.000    -12.926    1.016   -2.260
 AZ2           H22    H    H         0.000    -12.312    1.180   -0.594
 AZ2           C5     C    CH1       0.000    -12.772   -0.843   -1.179
 AZ2           H51    H    H         0.000    -12.123   -1.292   -0.414
 AZ2           C15    C    C         0.000    -14.187   -0.778   -0.662
 AZ2           O18    O    OC       -0.500    -15.103   -1.376   -1.270
 AZ2           O16    O    OC       -0.500    -14.445   -0.127    0.374
 AZ2           O7     O    O2        0.000    -12.735   -1.640   -2.362
 AZ2           C8     C    CH2       0.000    -12.498   -2.987   -1.947
 AZ2           H81    H    H         0.000    -13.305   -3.310   -1.286
 AZ2           H82    H    H         0.000    -11.547   -3.040   -1.411
 AZ2           C11    C    CH3       0.000    -12.445   -3.898   -3.173
 AZ2           H113   H    H         0.000    -13.366   -3.848   -3.695
 AZ2           H112   H    H         0.000    -11.661   -3.586   -3.816
 AZ2           H111   H    H         0.000    -12.270   -4.898   -2.868
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 AZ2      O52    n/a    S46    START
 AZ2      S46    O52    O45    .
 AZ2      O51    S46    .      .
 AZ2      C47    S46    H471   .
 AZ2      H473   C47    .      .
 AZ2      H472   C47    .      .
 AZ2      H471   C47    .      .
 AZ2      O45    S46    C40    .
 AZ2      C40    O45    C41    .
 AZ2      C38    C40    C36    .
 AZ2      H381   C38    .      .
 AZ2      C36    C38    H361   .
 AZ2      H361   C36    .      .
 AZ2      C41    C40    C43    .
 AZ2      H411   C41    .      .
 AZ2      C43    C41    C35    .
 AZ2      H431   C43    .      .
 AZ2      C35    C43    C32    .
 AZ2      C32    C35    C29    .
 AZ2      H321   C32    .      .
 AZ2      H322   C32    .      .
 AZ2      C29    C32    O28    .
 AZ2      H291   C29    .      .
 AZ2      H292   C29    .      .
 AZ2      O28    C29    C23    .
 AZ2      C23    O28    C24    .
 AZ2      C21    C23    C19    .
 AZ2      H211   C21    .      .
 AZ2      C19    C21    H191   .
 AZ2      H191   C19    .      .
 AZ2      C24    C23    C26    .
 AZ2      H241   C24    .      .
 AZ2      C26    C24    C1     .
 AZ2      H261   C26    .      .
 AZ2      C1     C26    C2     .
 AZ2      C2     C1     C5     .
 AZ2      H21    C2     .      .
 AZ2      H22    C2     .      .
 AZ2      C5     C2     O7     .
 AZ2      H51    C5     .      .
 AZ2      C15    C5     O16    .
 AZ2      O18    C15    .      .
 AZ2      O16    C15    .      .
 AZ2      O7     C5     C8     .
 AZ2      C8     O7     C11    .
 AZ2      H81    C8     .      .
 AZ2      H82    C8     .      .
 AZ2      C11    C8     H111   .
 AZ2      H113   C11    .      .
 AZ2      H112   C11    .      .
 AZ2      H111   C11    .      END
 AZ2      C1     C19    .    ADD
 AZ2      C35    C36    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 AZ2      C2     C1        single      1.511    0.020
 AZ2      C1     C19       double      1.390    0.020
 AZ2      C1     C26       single      1.390    0.020
 AZ2      C5     C2        single      1.524    0.020
 AZ2      H21    C2        single      1.092    0.020
 AZ2      H22    C2        single      1.092    0.020
 AZ2      O7     C5        single      1.426    0.020
 AZ2      C15    C5        single      1.500    0.020
 AZ2      H51    C5        single      1.099    0.020
 AZ2      C8     O7        single      1.426    0.020
 AZ2      C11    C8        single      1.513    0.020
 AZ2      H81    C8        single      1.092    0.020
 AZ2      H82    C8        single      1.092    0.020
 AZ2      H111   C11       single      1.059    0.020
 AZ2      H112   C11       single      1.059    0.020
 AZ2      H113   C11       single      1.059    0.020
 AZ2      O16    C15       deloc       1.250    0.020
 AZ2      O18    C15       deloc       1.250    0.020
 AZ2      C19    C21       single      1.390    0.020
 AZ2      H191   C19       single      1.083    0.020
 AZ2      C21    C23       double      1.390    0.020
 AZ2      H211   C21       single      1.083    0.020
 AZ2      C24    C23       single      1.390    0.020
 AZ2      C23    O28       single      1.370    0.020
 AZ2      C26    C24       double      1.390    0.020
 AZ2      H241   C24       single      1.083    0.020
 AZ2      H261   C26       single      1.083    0.020
 AZ2      O28    C29       single      1.426    0.020
 AZ2      C29    C32       single      1.524    0.020
 AZ2      H291   C29       single      1.092    0.020
 AZ2      H292   C29       single      1.092    0.020
 AZ2      C32    C35       single      1.511    0.020
 AZ2      H321   C32       single      1.092    0.020
 AZ2      H322   C32       single      1.092    0.020
 AZ2      C35    C36       double      1.390    0.020
 AZ2      C35    C43       single      1.390    0.020
 AZ2      C36    C38       single      1.390    0.020
 AZ2      H361   C36       single      1.083    0.020
 AZ2      C38    C40       double      1.390    0.020
 AZ2      H381   C38       single      1.083    0.020
 AZ2      C41    C40       single      1.390    0.020
 AZ2      C40    O45       single      1.370    0.020
 AZ2      C43    C41       double      1.390    0.020
 AZ2      H411   C41       single      1.083    0.020
 AZ2      H431   C43       single      1.083    0.020
 AZ2      O45    S46       single      1.535    0.020
 AZ2      C47    S46       single      1.662    0.020
 AZ2      O51    S46       double      1.436    0.020
 AZ2      S46    O52       double      1.436    0.020
 AZ2      H471   C47       single      1.059    0.020
 AZ2      H472   C47       single      1.059    0.020
 AZ2      H473   C47       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 AZ2      O52    S46    O51     109.500    3.000
 AZ2      O52    S46    C47     109.500    3.000
 AZ2      O52    S46    O45     109.500    3.000
 AZ2      O51    S46    C47     109.500    3.000
 AZ2      O51    S46    O45     109.500    3.000
 AZ2      C47    S46    O45     109.500    3.000
 AZ2      S46    C47    H473    109.500    3.000
 AZ2      S46    C47    H472    109.500    3.000
 AZ2      S46    C47    H471    109.500    3.000
 AZ2      H473   C47    H472    109.470    3.000
 AZ2      H473   C47    H471    109.470    3.000
 AZ2      H472   C47    H471    109.470    3.000
 AZ2      S46    O45    C40     120.000    3.000
 AZ2      O45    C40    C38     120.000    3.000
 AZ2      O45    C40    C41     120.000    3.000
 AZ2      C38    C40    C41     120.000    3.000
 AZ2      C40    C38    H381    120.000    3.000
 AZ2      C40    C38    C36     120.000    3.000
 AZ2      H381   C38    C36     120.000    3.000
 AZ2      C38    C36    H361    120.000    3.000
 AZ2      C38    C36    C35     120.000    3.000
 AZ2      H361   C36    C35     120.000    3.000
 AZ2      C40    C41    H411    120.000    3.000
 AZ2      C40    C41    C43     120.000    3.000
 AZ2      H411   C41    C43     120.000    3.000
 AZ2      C41    C43    H431    120.000    3.000
 AZ2      C41    C43    C35     120.000    3.000
 AZ2      H431   C43    C35     120.000    3.000
 AZ2      C43    C35    C32     120.000    3.000
 AZ2      C43    C35    C36     120.000    3.000
 AZ2      C32    C35    C36     120.000    3.000
 AZ2      C35    C32    H321    109.470    3.000
 AZ2      C35    C32    H322    109.470    3.000
 AZ2      C35    C32    C29     109.470    3.000
 AZ2      H321   C32    H322    107.900    3.000
 AZ2      H321   C32    C29     109.470    3.000
 AZ2      H322   C32    C29     109.470    3.000
 AZ2      C32    C29    H291    109.470    3.000
 AZ2      C32    C29    H292    109.470    3.000
 AZ2      C32    C29    O28     109.470    3.000
 AZ2      H291   C29    H292    107.900    3.000
 AZ2      H291   C29    O28     109.470    3.000
 AZ2      H292   C29    O28     109.470    3.000
 AZ2      C29    O28    C23     120.000    3.000
 AZ2      O28    C23    C21     120.000    3.000
 AZ2      O28    C23    C24     120.000    3.000
 AZ2      C21    C23    C24     120.000    3.000
 AZ2      C23    C21    H211    120.000    3.000
 AZ2      C23    C21    C19     120.000    3.000
 AZ2      H211   C21    C19     120.000    3.000
 AZ2      C21    C19    H191    120.000    3.000
 AZ2      C21    C19    C1      120.000    3.000
 AZ2      H191   C19    C1      120.000    3.000
 AZ2      C23    C24    H241    120.000    3.000
 AZ2      C23    C24    C26     120.000    3.000
 AZ2      H241   C24    C26     120.000    3.000
 AZ2      C24    C26    H261    120.000    3.000
 AZ2      C24    C26    C1      120.000    3.000
 AZ2      H261   C26    C1      120.000    3.000
 AZ2      C26    C1     C2      120.000    3.000
 AZ2      C26    C1     C19     120.000    3.000
 AZ2      C2     C1     C19     120.000    3.000
 AZ2      C1     C2     H21     109.470    3.000
 AZ2      C1     C2     H22     109.470    3.000
 AZ2      C1     C2     C5      109.470    3.000
 AZ2      H21    C2     H22     107.900    3.000
 AZ2      H21    C2     C5      109.470    3.000
 AZ2      H22    C2     C5      109.470    3.000
 AZ2      C2     C5     H51     108.340    3.000
 AZ2      C2     C5     C15     109.470    3.000
 AZ2      C2     C5     O7      109.470    3.000
 AZ2      H51    C5     C15     108.810    3.000
 AZ2      H51    C5     O7      109.470    3.000
 AZ2      C15    C5     O7      109.470    3.000
 AZ2      C5     C15    O18     118.500    3.000
 AZ2      C5     C15    O16     118.500    3.000
 AZ2      O18    C15    O16     123.000    3.000
 AZ2      C5     O7     C8      111.800    3.000
 AZ2      O7     C8     H81     109.470    3.000
 AZ2      O7     C8     H82     109.470    3.000
 AZ2      O7     C8     C11     109.470    3.000
 AZ2      H81    C8     H82     107.900    3.000
 AZ2      H81    C8     C11     109.470    3.000
 AZ2      H82    C8     C11     109.470    3.000
 AZ2      C8     C11    H113    109.470    3.000
 AZ2      C8     C11    H112    109.470    3.000
 AZ2      C8     C11    H111    109.470    3.000
 AZ2      H113   C11    H112    109.470    3.000
 AZ2      H113   C11    H111    109.470    3.000
 AZ2      H112   C11    H111    109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 AZ2      var_1    O52    S46    C47    H471     -70.376   20.000   1
 AZ2      var_2    O52    S46    O45    C40      -26.250   20.000   1
 AZ2      var_3    S46    O45    C40    C41      -89.948   20.000   1
 AZ2      CONST_1  O45    C40    C38    C36      180.000    0.000   0
 AZ2      CONST_2  C40    C38    C36    C35        0.000    0.000   0
 AZ2      CONST_3  O45    C40    C41    C43      180.000    0.000   0
 AZ2      CONST_4  C40    C41    C43    C35        0.000    0.000   0
 AZ2      CONST_5  C41    C43    C35    C32      180.000    0.000   0
 AZ2      CONST_6  C43    C35    C36    C38        0.000    0.000   0
 AZ2      var_4    C43    C35    C32    C29      -90.266   20.000   2
 AZ2      var_5    C35    C32    C29    O28      179.989   20.000   3
 AZ2      var_6    C32    C29    O28    C23      179.992   20.000   1
 AZ2      var_7    C29    O28    C23    C24        0.049   20.000   1
 AZ2      CONST_7  O28    C23    C21    C19      180.000    0.000   0
 AZ2      CONST_8  C23    C21    C19    C1         0.000    0.000   0
 AZ2      CONST_9  O28    C23    C24    C26      180.000    0.000   0
 AZ2      CONST_10 C23    C24    C26    C1         0.000    0.000   0
 AZ2      CONST_11 C24    C26    C1     C2       180.000    0.000   0
 AZ2      CONST_12 C26    C1     C19    C21        0.000    0.000   0
 AZ2      var_8    C26    C1     C2     C5       -90.265   20.000   2
 AZ2      var_9    C1     C2     C5     O7       -60.072   20.000   3
 AZ2      var_10   C2     C5     C15    O16      -60.045   20.000   3
 AZ2      var_11   C2     C5     O7     C8       150.014   20.000   1
 AZ2      var_12   C5     O7     C8     C11     -179.969   20.000   1
 AZ2      var_13   O7     C8     C11    H111    -179.972   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 AZ2      chir_01  C5     C2     O7     C15       positiv
 AZ2      chir_02  S46    O45    C47    O51       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 AZ2      plan-1    C1        0.020
 AZ2      plan-1    C2        0.020
 AZ2      plan-1    C19       0.020
 AZ2      plan-1    C26       0.020
 AZ2      plan-1    C21       0.020
 AZ2      plan-1    C23       0.020
 AZ2      plan-1    C24       0.020
 AZ2      plan-1    H191      0.020
 AZ2      plan-1    H211      0.020
 AZ2      plan-1    O28       0.020
 AZ2      plan-1    H241      0.020
 AZ2      plan-1    H261      0.020
 AZ2      plan-2    C15       0.020
 AZ2      plan-2    C5        0.020
 AZ2      plan-2    O16       0.020
 AZ2      plan-2    O18       0.020
 AZ2      plan-3    C35       0.020
 AZ2      plan-3    C32       0.020
 AZ2      plan-3    C36       0.020
 AZ2      plan-3    C43       0.020
 AZ2      plan-3    C38       0.020
 AZ2      plan-3    C40       0.020
 AZ2      plan-3    C41       0.020
 AZ2      plan-3    H361      0.020
 AZ2      plan-3    H381      0.020
 AZ2      plan-3    O45       0.020
 AZ2      plan-3    H411      0.020
 AZ2      plan-3    H431      0.020
# ------------------------------------------------------