File: CIO.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (369 lines) | stat: -rw-r--r-- 16,978 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
CIO      CIO 'CILOMILAST                          ' non-polymer        49  25 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_CIO
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 CIO           N22    N    NS        0.000      0.000    0.000    0.000
 CIO           C21    C    CSP       0.000     -0.846   -0.355    0.669
 CIO           C1     C    CT        0.000     -1.943   -0.816    1.536
 CIO           C6     C    CH2       0.000     -1.423   -0.998    2.963
 CIO           H61    H    H         0.000     -2.237   -1.339    3.605
 CIO           H62    H    H         0.000     -1.041   -0.045    3.335
 CIO           C5     C    CH2       0.000     -0.299   -2.037    2.967
 CIO           H52    H    H         0.000      0.072   -2.166    3.986
 CIO           H51    H    H         0.000      0.515   -1.694    2.326
 CIO           C2     C    CH2       0.000     -2.480   -2.149    1.016
 CIO           H21    H    H         0.000     -2.853   -2.018   -0.002
 CIO           H22    H    H         0.000     -3.293   -2.489    1.659
 CIO           C3     C    CH2       0.000     -1.356   -3.188    1.019
 CIO           H31    H    H         0.000     -0.543   -2.846    0.375
 CIO           H32    H    H         0.000     -1.739   -4.139    0.645
 CIO           C4     C    CH1       0.000     -0.835   -3.371    2.445
 CIO           H4     H    H         0.000     -1.654   -3.714    3.092
 CIO           C23    C    C         0.000      0.271   -4.394    2.450
 CIO           O24    O    OC       -0.500      1.415   -4.076    2.845
 CIO           O25    O    OC       -0.500      0.046   -5.560    2.059
 CIO           C7     C    CR6       0.000     -3.049    0.207    1.532
 CIO           C20    C    CR16      0.000     -3.675    0.539    0.346
 CIO           H20    H    H         0.000     -3.369    0.068   -0.579
 CIO           C13    C    CR6       0.000     -4.697    1.476    0.342
 CIO           C10    C    CR6       0.000     -5.080    2.089    1.531
 CIO           O11    O    O2        0.000     -6.078    3.013    1.530
 CIO           C12    C    CH3       0.000     -6.240    3.447    2.882
 CIO           H123   H    H         0.000     -6.495    2.618    3.491
 CIO           H122   H    H         0.000     -5.334    3.873    3.228
 CIO           H121   H    H         0.000     -7.012    4.171    2.931
 CIO           C9     C    CR16      0.000     -4.448    1.750    2.716
 CIO           H9     H    H         0.000     -4.747    2.222    3.644
 CIO           C8     C    CR16      0.000     -3.434    0.811    2.715
 CIO           H8     H    H         0.000     -2.940    0.547    3.642
 CIO           O14    O    O2        0.000     -5.314    1.804   -0.824
 CIO           C15    C    CH1       0.000     -4.809    0.918   -1.824
 CIO           H15    H    H         0.000     -4.648   -0.080   -1.395
 CIO           C19    C    CH2       0.000     -5.795    0.833   -3.002
 CIO           H191   H    H         0.000     -6.667    1.466   -2.825
 CIO           H192   H    H         0.000     -6.121   -0.197   -3.162
 CIO           C18    C    CH2       0.000     -5.037    1.334   -4.248
 CIO           H181   H    H         0.000     -5.212    2.396   -4.433
 CIO           H182   H    H         0.000     -5.295    0.762   -5.141
 CIO           C17    C    CH2       0.000     -3.546    1.108   -3.901
 CIO           H171   H    H         0.000     -2.879    1.768   -4.460
 CIO           H172   H    H         0.000     -3.233    0.072   -4.042
 CIO           C16    C    CH2       0.000     -3.486    1.468   -2.396
 CIO           H162   H    H         0.000     -3.438    2.546   -2.234
 CIO           H161   H    H         0.000     -2.644    0.987   -1.893
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 CIO      N22    n/a    C21    START
 CIO      C21    N22    C1     .
 CIO      C1     C21    C7     .
 CIO      C6     C1     C5     .
 CIO      H61    C6     .      .
 CIO      H62    C6     .      .
 CIO      C5     C6     H51    .
 CIO      H52    C5     .      .
 CIO      H51    C5     .      .
 CIO      C2     C1     C3     .
 CIO      H21    C2     .      .
 CIO      H22    C2     .      .
 CIO      C3     C2     C4     .
 CIO      H31    C3     .      .
 CIO      H32    C3     .      .
 CIO      C4     C3     C23    .
 CIO      H4     C4     .      .
 CIO      C23    C4     O25    .
 CIO      O24    C23    .      .
 CIO      O25    C23    .      .
 CIO      C7     C1     C20    .
 CIO      C20    C7     C13    .
 CIO      H20    C20    .      .
 CIO      C13    C20    O14    .
 CIO      C10    C13    C9     .
 CIO      O11    C10    C12    .
 CIO      C12    O11    H121   .
 CIO      H123   C12    .      .
 CIO      H122   C12    .      .
 CIO      H121   C12    .      .
 CIO      C9     C10    C8     .
 CIO      H9     C9     .      .
 CIO      C8     C9     H8     .
 CIO      H8     C8     .      .
 CIO      O14    C13    C15    .
 CIO      C15    O14    C19    .
 CIO      H15    C15    .      .
 CIO      C19    C15    C18    .
 CIO      H191   C19    .      .
 CIO      H192   C19    .      .
 CIO      C18    C19    C17    .
 CIO      H181   C18    .      .
 CIO      H182   C18    .      .
 CIO      C17    C18    C16    .
 CIO      H171   C17    .      .
 CIO      H172   C17    .      .
 CIO      C16    C17    H161   .
 CIO      H162   C16    .      .
 CIO      H161   C16    .      END
 CIO      C4     C5     .    ADD
 CIO      C7     C8     .    ADD
 CIO      C15    C16    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 CIO      O25    C23       deloc       1.250    0.020
 CIO      O24    C23       deloc       1.250    0.020
 CIO      C23    C4        single      1.500    0.020
 CIO      C4     C5        single      1.524    0.020
 CIO      C4     C3        single      1.524    0.020
 CIO      H4     C4        single      1.099    0.020
 CIO      C5     C6        single      1.524    0.020
 CIO      H51    C5        single      1.092    0.020
 CIO      H52    C5        single      1.092    0.020
 CIO      C6     C1        single      1.524    0.020
 CIO      H61    C6        single      1.092    0.020
 CIO      H62    C6        single      1.092    0.020
 CIO      C3     C2        single      1.524    0.020
 CIO      H31    C3        single      1.092    0.020
 CIO      H32    C3        single      1.092    0.020
 CIO      C2     C1        single      1.524    0.020
 CIO      H21    C2        single      1.092    0.020
 CIO      H22    C2        single      1.092    0.020
 CIO      C1     C21       single      1.470    0.020
 CIO      C7     C1        single      1.500    0.020
 CIO      C21    N22       triple      1.158    0.020
 CIO      C7     C8        double      1.390    0.020
 CIO      C20    C7        single      1.390    0.020
 CIO      C8     C9        single      1.390    0.020
 CIO      H8     C8        single      1.083    0.020
 CIO      C9     C10       double      1.390    0.020
 CIO      H9     C9        single      1.083    0.020
 CIO      O11    C10       single      1.370    0.020
 CIO      C10    C13       single      1.487    0.020
 CIO      C12    O11       single      1.426    0.020
 CIO      H121   C12       single      1.059    0.020
 CIO      H122   C12       single      1.059    0.020
 CIO      H123   C12       single      1.059    0.020
 CIO      C13    C20       double      1.390    0.020
 CIO      O14    C13       single      1.370    0.020
 CIO      H20    C20       single      1.083    0.020
 CIO      C15    O14       single      1.426    0.020
 CIO      C15    C16       single      1.524    0.020
 CIO      C19    C15       single      1.524    0.020
 CIO      H15    C15       single      1.099    0.020
 CIO      C16    C17       single      1.524    0.020
 CIO      H161   C16       single      1.092    0.020
 CIO      H162   C16       single      1.092    0.020
 CIO      C17    C18       single      1.524    0.020
 CIO      H171   C17       single      1.092    0.020
 CIO      H172   C17       single      1.092    0.020
 CIO      C18    C19       single      1.524    0.020
 CIO      H181   C18       single      1.092    0.020
 CIO      H182   C18       single      1.092    0.020
 CIO      H191   C19       single      1.092    0.020
 CIO      H192   C19       single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 CIO      N22    C21    C1      180.000    3.000
 CIO      C21    C1     C6      109.500    3.000
 CIO      C21    C1     C2      109.500    3.000
 CIO      C21    C1     C7      109.500    3.000
 CIO      C6     C1     C2      111.000    3.000
 CIO      C6     C1     C7      109.500    3.000
 CIO      C2     C1     C7      109.500    3.000
 CIO      C1     C6     H61     109.470    3.000
 CIO      C1     C6     H62     109.470    3.000
 CIO      C1     C6     C5      111.000    3.000
 CIO      H61    C6     H62     107.900    3.000
 CIO      H61    C6     C5      109.470    3.000
 CIO      H62    C6     C5      109.470    3.000
 CIO      C6     C5     H52     109.470    3.000
 CIO      C6     C5     H51     109.470    3.000
 CIO      C6     C5     C4      111.000    3.000
 CIO      H52    C5     H51     107.900    3.000
 CIO      H52    C5     C4      109.470    3.000
 CIO      H51    C5     C4      109.470    3.000
 CIO      C1     C2     H21     109.470    3.000
 CIO      C1     C2     H22     109.470    3.000
 CIO      C1     C2     C3      111.000    3.000
 CIO      H21    C2     H22     107.900    3.000
 CIO      H21    C2     C3      109.470    3.000
 CIO      H22    C2     C3      109.470    3.000
 CIO      C2     C3     H31     109.470    3.000
 CIO      C2     C3     H32     109.470    3.000
 CIO      C2     C3     C4      111.000    3.000
 CIO      H31    C3     H32     107.900    3.000
 CIO      H31    C3     C4      109.470    3.000
 CIO      H32    C3     C4      109.470    3.000
 CIO      C3     C4     H4      108.340    3.000
 CIO      C3     C4     C23     109.470    3.000
 CIO      C3     C4     C5      109.470    3.000
 CIO      H4     C4     C23     108.810    3.000
 CIO      H4     C4     C5      108.340    3.000
 CIO      C23    C4     C5      109.470    3.000
 CIO      C4     C23    O24     118.500    3.000
 CIO      C4     C23    O25     118.500    3.000
 CIO      O24    C23    O25     123.000    3.000
 CIO      C1     C7     C20     120.000    3.000
 CIO      C1     C7     C8      120.000    3.000
 CIO      C20    C7     C8      120.000    3.000
 CIO      C7     C20    H20     120.000    3.000
 CIO      C7     C20    C13     120.000    3.000
 CIO      H20    C20    C13     120.000    3.000
 CIO      C20    C13    C10     120.000    3.000
 CIO      C20    C13    O14     120.000    3.000
 CIO      C10    C13    O14     120.000    3.000
 CIO      C13    C10    O11     120.000    3.000
 CIO      C13    C10    C9      120.000    3.000
 CIO      O11    C10    C9      120.000    3.000
 CIO      C10    O11    C12     120.000    3.000
 CIO      O11    C12    H123    109.470    3.000
 CIO      O11    C12    H122    109.470    3.000
 CIO      O11    C12    H121    109.470    3.000
 CIO      H123   C12    H122    109.470    3.000
 CIO      H123   C12    H121    109.470    3.000
 CIO      H122   C12    H121    109.470    3.000
 CIO      C10    C9     H9      120.000    3.000
 CIO      C10    C9     C8      120.000    3.000
 CIO      H9     C9     C8      120.000    3.000
 CIO      C9     C8     H8      120.000    3.000
 CIO      C9     C8     C7      120.000    3.000
 CIO      H8     C8     C7      120.000    3.000
 CIO      C13    O14    C15     120.000    3.000
 CIO      O14    C15    H15     109.470    3.000
 CIO      O14    C15    C19     109.470    3.000
 CIO      O14    C15    C16     109.470    3.000
 CIO      H15    C15    C19     108.340    3.000
 CIO      H15    C15    C16     108.340    3.000
 CIO      C19    C15    C16     109.470    3.000
 CIO      C15    C19    H191    109.470    3.000
 CIO      C15    C19    H192    109.470    3.000
 CIO      C15    C19    C18     111.000    3.000
 CIO      H191   C19    H192    107.900    3.000
 CIO      H191   C19    C18     109.470    3.000
 CIO      H192   C19    C18     109.470    3.000
 CIO      C19    C18    H181    109.470    3.000
 CIO      C19    C18    H182    109.470    3.000
 CIO      C19    C18    C17     111.000    3.000
 CIO      H181   C18    H182    107.900    3.000
 CIO      H181   C18    C17     109.470    3.000
 CIO      H182   C18    C17     109.470    3.000
 CIO      C18    C17    H171    109.470    3.000
 CIO      C18    C17    H172    109.470    3.000
 CIO      C18    C17    C16     111.000    3.000
 CIO      H171   C17    H172    107.900    3.000
 CIO      H171   C17    C16     109.470    3.000
 CIO      H172   C17    C16     109.470    3.000
 CIO      C17    C16    H162    109.470    3.000
 CIO      C17    C16    H161    109.470    3.000
 CIO      C17    C16    C15     111.000    3.000
 CIO      H162   C16    H161    107.900    3.000
 CIO      H162   C16    C15     109.470    3.000
 CIO      H161   C16    C15     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 CIO      var_1    N22    C21    C1     C7       -60.144   20.000   1
 CIO      var_2    C21    C1     C6     C5       -60.000   20.000   1
 CIO      var_3    C1     C6     C5     C4       -60.000   20.000   3
 CIO      var_4    C21    C1     C2     C3        60.000   20.000   1
 CIO      var_5    C1     C2     C3     C4        60.000   20.000   3
 CIO      var_6    C2     C3     C4     C23      180.000   20.000   3
 CIO      var_7    C3     C4     C5     C6        60.000   20.000   3
 CIO      var_8    C3     C4     C23    O25      -59.974   20.000   3
 CIO      var_9    C21    C1     C7     C20       60.004   20.000   1
 CIO      CONST_1  C1     C7     C8     C9       180.000    0.000   0
 CIO      CONST_2  C1     C7     C20    C13      180.000    0.000   0
 CIO      CONST_3  C7     C20    C13    O14      180.000    0.000   0
 CIO      CONST_4  C20    C13    C10    C9         0.000    0.000   0
 CIO      var_10   C13    C10    O11    C12      179.708   20.000   1
 CIO      var_11   C10    O11    C12    H121    -179.944   20.000   1
 CIO      CONST_5  C13    C10    C9     C8         0.000    0.000   0
 CIO      CONST_6  C10    C9     C8     C7         0.000    0.000   0
 CIO      var_12   C20    C13    O14    C15        6.636   20.000   1
 CIO      var_13   C13    O14    C15    C19      158.221   20.000   1
 CIO      var_14   O14    C15    C16    C17     -150.000   20.000   3
 CIO      var_15   O14    C15    C19    C18      120.000   20.000   3
 CIO      var_16   C15    C19    C18    C17       30.000   20.000   3
 CIO      var_17   C19    C18    C17    C16      -30.000   20.000   3
 CIO      var_18   C18    C17    C16    C15       30.000   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 CIO      chir_01  C4     C23    C5     C3        negativ
 CIO      chir_02  C1     C6     C2     C21       positiv
 CIO      chir_03  C15    O14    C16    C19       positiv
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 CIO      plan-1    C23       0.020
 CIO      plan-1    O25       0.020
 CIO      plan-1    O24       0.020
 CIO      plan-1    C4        0.020
 CIO      plan-2    C7        0.020
 CIO      plan-2    C1        0.020
 CIO      plan-2    C8        0.020
 CIO      plan-2    C20       0.020
 CIO      plan-2    C9        0.020
 CIO      plan-2    C10       0.020
 CIO      plan-2    C13       0.020
 CIO      plan-2    H8        0.020
 CIO      plan-2    H9        0.020
 CIO      plan-2    O11       0.020
 CIO      plan-2    O14       0.020
 CIO      plan-2    H20       0.020
# ------------------------------------------------------