File: CRI.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (421 lines) | stat: -rw-r--r-- 19,280 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
CRI      CRI '.                                   ' non-polymer        54  31 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_CRI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 CRI           O34    O    O         0.000      0.000    0.000    0.000
 CRI           C33    C    C         0.000      0.362    1.007   -0.577
 CRI           C40    C    CR6       0.000      1.506    1.786   -0.059
 CRI           C39    C    CR16      0.000      1.927    2.938   -0.723
 CRI           H42    H    H         0.000      1.420    3.262   -1.623
 CRI           C38    C    CR16      0.000      2.993    3.664   -0.230
 CRI           H41    H    H         0.000      3.314    4.564   -0.739
 CRI           C37    C    CR6       0.000      3.650    3.244    0.913
 CRI           C45    C    CH3       0.000      4.817    4.038    1.441
 CRI           H48    H    H         0.000      4.689    5.060    1.196
 CRI           H47    H    H         0.000      4.869    3.932    2.493
 CRI           H46    H    H         0.000      5.714    3.681    1.005
 CRI           C36    C    CR16      0.000      3.241    2.099    1.572
 CRI           H44    H    H         0.000      3.759    1.775    2.466
 CRI           C35    C    CR16      0.000      2.174    1.368    1.093
 CRI           H43    H    H         0.000      1.854    0.472    1.610
 CRI           N31    N    NH1       0.000     -0.280    1.412   -1.690
 CRI           H32    H    H         0.000      0.082    2.186   -2.228
 CRI           C13    C    CR6       0.000     -1.449    0.762   -2.099
 CRI           C12    C    CR16      0.000     -2.324    0.248   -1.152
 CRI           H17    H    H         0.000     -2.102    0.352   -0.097
 CRI           C14    C    CR16      0.000     -1.732    0.632   -3.450
 CRI           H18    H    H         0.000     -1.048    1.036   -4.187
 CRI           C15    C    CR6       0.000     -2.897   -0.018   -3.862
 CRI           C20    C    C         0.000     -3.198   -0.156   -5.303
 CRI           N22    N    N         0.000     -2.224   -0.513   -6.164
 CRI           C27    C    CH3       0.000     -0.905   -0.899   -5.657
 CRI           H30    H    H         0.000     -0.647   -1.856   -6.031
 CRI           H29    H    H         0.000     -0.182   -0.191   -5.974
 CRI           H28    H    H         0.000     -0.926   -0.930   -4.598
 CRI           C23    C    CH3       0.000     -2.485   -0.515   -7.605
 CRI           H26    H    H         0.000     -3.276   -1.187   -7.822
 CRI           H25    H    H         0.000     -2.757    0.460   -7.919
 CRI           H24    H    H         0.000     -1.613   -0.821   -8.123
 CRI           O21    O    O         0.000     -4.323    0.052   -5.712
 CRI           C16    C    CR16      0.000     -3.778   -0.529   -2.913
 CRI           H19    H    H         0.000     -4.688   -1.026   -3.228
 CRI           C11    C    CR6       0.000     -3.489   -0.401   -1.557
 CRI           C5     C    CR6       0.000     -4.421   -0.951   -0.544
 CRI           C6     C    CR16      0.000     -5.040   -2.182   -0.760
 CRI           H10    H    H         0.000     -4.842   -2.734   -1.671
 CRI           C1     C    CR16      0.000     -5.902   -2.695    0.180
 CRI           H7     H    H         0.000     -6.376   -3.655    0.014
 CRI           C4     C    CR16      0.000     -4.685   -0.233    0.623
 CRI           H9     H    H         0.000     -4.208    0.726    0.788
 CRI           C3     C    CR16      0.000     -5.551   -0.743    1.564
 CRI           H8     H    H         0.000     -5.755   -0.186    2.470
 CRI           C2     C    CR6       0.000     -6.167   -1.978    1.349
 CRI           C      C    C         0.000     -7.096   -2.526    2.359
 CRI           O      O    O         0.000     -7.325   -1.901    3.377
 CRI           N      N    NH1       0.000     -7.690   -3.717    2.152
 CRI           HN     H    H         0.000     -7.500   -4.236    1.307
 CRI           OH     O    OH1       0.000     -8.580   -4.242    3.120
 CRI           HO1    H    H         0.000     -9.011   -5.101    2.976
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 CRI      O34    n/a    C33    START
 CRI      C33    O34    N31    .
 CRI      C40    C33    C35    .
 CRI      C39    C40    C38    .
 CRI      H42    C39    .      .
 CRI      C38    C39    C37    .
 CRI      H41    C38    .      .
 CRI      C37    C38    C36    .
 CRI      C45    C37    H46    .
 CRI      H48    C45    .      .
 CRI      H47    C45    .      .
 CRI      H46    C45    .      .
 CRI      C36    C37    H44    .
 CRI      H44    C36    .      .
 CRI      C35    C40    H43    .
 CRI      H43    C35    .      .
 CRI      N31    C33    C13    .
 CRI      H32    N31    .      .
 CRI      C13    N31    C14    .
 CRI      C12    C13    H17    .
 CRI      H17    C12    .      .
 CRI      C14    C13    C15    .
 CRI      H18    C14    .      .
 CRI      C15    C14    C16    .
 CRI      C20    C15    O21    .
 CRI      N22    C20    C23    .
 CRI      C27    N22    H28    .
 CRI      H30    C27    .      .
 CRI      H29    C27    .      .
 CRI      H28    C27    .      .
 CRI      C23    N22    H24    .
 CRI      H26    C23    .      .
 CRI      H25    C23    .      .
 CRI      H24    C23    .      .
 CRI      O21    C20    .      .
 CRI      C16    C15    C11    .
 CRI      H19    C16    .      .
 CRI      C11    C16    C5     .
 CRI      C5     C11    C4     .
 CRI      C6     C5     C1     .
 CRI      H10    C6     .      .
 CRI      C1     C6     H7     .
 CRI      H7     C1     .      .
 CRI      C4     C5     C3     .
 CRI      H9     C4     .      .
 CRI      C3     C4     C2     .
 CRI      H8     C3     .      .
 CRI      C2     C3     C      .
 CRI      C      C2     N      .
 CRI      O      C      .      .
 CRI      N      C      OH     .
 CRI      HN     N      .      .
 CRI      OH     N      HO1    .
 CRI      HO1    OH     .      END
 CRI      C1     C2     .    ADD
 CRI      C11    C12    .    ADD
 CRI      C35    C36    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 CRI      OH     N         single      1.392    0.020
 CRI      N      C         single      1.330    0.020
 CRI      HN     N         single      1.010    0.020
 CRI      HO1    OH        single      0.967    0.020
 CRI      O      C         double      1.220    0.020
 CRI      C      C2        single      1.500    0.020
 CRI      C1     C2        double      1.390    0.020
 CRI      C1     C6        single      1.390    0.020
 CRI      H7     C1        single      1.083    0.020
 CRI      C2     C3        single      1.390    0.020
 CRI      C3     C4        double      1.390    0.020
 CRI      H8     C3        single      1.083    0.020
 CRI      C4     C5        single      1.390    0.020
 CRI      H9     C4        single      1.083    0.020
 CRI      C6     C5        double      1.390    0.020
 CRI      C5     C11       single      1.487    0.020
 CRI      H10    C6        single      1.083    0.020
 CRI      C11    C12       double      1.390    0.020
 CRI      C11    C16       single      1.390    0.020
 CRI      C12    C13       single      1.390    0.020
 CRI      H17    C12       single      1.083    0.020
 CRI      C14    C13       double      1.390    0.020
 CRI      C13    N31       single      1.350    0.020
 CRI      C15    C14       single      1.390    0.020
 CRI      H18    C14       single      1.083    0.020
 CRI      C16    C15       double      1.390    0.020
 CRI      C20    C15       single      1.500    0.020
 CRI      H19    C16       single      1.083    0.020
 CRI      O21    C20       double      1.220    0.020
 CRI      N22    C20       single      1.330    0.020
 CRI      C23    N22       single      1.455    0.020
 CRI      C27    N22       single      1.455    0.020
 CRI      H24    C23       single      1.059    0.020
 CRI      H25    C23       single      1.059    0.020
 CRI      H26    C23       single      1.059    0.020
 CRI      H28    C27       single      1.059    0.020
 CRI      H29    C27       single      1.059    0.020
 CRI      H30    C27       single      1.059    0.020
 CRI      N31    C33       single      1.330    0.020
 CRI      H32    N31       single      1.010    0.020
 CRI      C33    O34       double      1.220    0.020
 CRI      C40    C33       single      1.500    0.020
 CRI      C35    C36       double      1.390    0.020
 CRI      C35    C40       single      1.390    0.020
 CRI      H43    C35       single      1.083    0.020
 CRI      C36    C37       single      1.390    0.020
 CRI      H44    C36       single      1.083    0.020
 CRI      C37    C38       double      1.390    0.020
 CRI      C45    C37       single      1.506    0.020
 CRI      C38    C39       single      1.390    0.020
 CRI      H41    C38       single      1.083    0.020
 CRI      C39    C40       double      1.390    0.020
 CRI      H42    C39       single      1.083    0.020
 CRI      H46    C45       single      1.059    0.020
 CRI      H47    C45       single      1.059    0.020
 CRI      H48    C45       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 CRI      O34    C33    C40     120.500    3.000
 CRI      O34    C33    N31     123.000    3.000
 CRI      C40    C33    N31     120.000    3.000
 CRI      C33    C40    C39     120.000    3.000
 CRI      C33    C40    C35     120.000    3.000
 CRI      C39    C40    C35     120.000    3.000
 CRI      C40    C39    H42     120.000    3.000
 CRI      C40    C39    C38     120.000    3.000
 CRI      H42    C39    C38     120.000    3.000
 CRI      C39    C38    H41     120.000    3.000
 CRI      C39    C38    C37     120.000    3.000
 CRI      H41    C38    C37     120.000    3.000
 CRI      C38    C37    C45     120.000    3.000
 CRI      C38    C37    C36     120.000    3.000
 CRI      C45    C37    C36     120.000    3.000
 CRI      C37    C45    H48     109.470    3.000
 CRI      C37    C45    H47     109.470    3.000
 CRI      C37    C45    H46     109.470    3.000
 CRI      H48    C45    H47     109.470    3.000
 CRI      H48    C45    H46     109.470    3.000
 CRI      H47    C45    H46     109.470    3.000
 CRI      C37    C36    H44     120.000    3.000
 CRI      C37    C36    C35     120.000    3.000
 CRI      H44    C36    C35     120.000    3.000
 CRI      C40    C35    H43     120.000    3.000
 CRI      C40    C35    C36     120.000    3.000
 CRI      H43    C35    C36     120.000    3.000
 CRI      C33    N31    H32     120.000    3.000
 CRI      C33    N31    C13     120.000    3.000
 CRI      H32    N31    C13     120.000    3.000
 CRI      N31    C13    C12     120.000    3.000
 CRI      N31    C13    C14     120.000    3.000
 CRI      C12    C13    C14     120.000    3.000
 CRI      C13    C12    H17     120.000    3.000
 CRI      C13    C12    C11     120.000    3.000
 CRI      H17    C12    C11     120.000    3.000
 CRI      C13    C14    H18     120.000    3.000
 CRI      C13    C14    C15     120.000    3.000
 CRI      H18    C14    C15     120.000    3.000
 CRI      C14    C15    C20     120.000    3.000
 CRI      C14    C15    C16     120.000    3.000
 CRI      C20    C15    C16     120.000    3.000
 CRI      C15    C20    N22     120.000    3.000
 CRI      C15    C20    O21     120.500    3.000
 CRI      N22    C20    O21     123.000    3.000
 CRI      C20    N22    C27     127.000    3.000
 CRI      C20    N22    C23     127.000    3.000
 CRI      C27    N22    C23     120.000    3.000
 CRI      N22    C27    H30     109.470    3.000
 CRI      N22    C27    H29     109.470    3.000
 CRI      N22    C27    H28     109.470    3.000
 CRI      H30    C27    H29     109.470    3.000
 CRI      H30    C27    H28     109.470    3.000
 CRI      H29    C27    H28     109.470    3.000
 CRI      N22    C23    H26     109.470    3.000
 CRI      N22    C23    H25     109.470    3.000
 CRI      N22    C23    H24     109.470    3.000
 CRI      H26    C23    H25     109.470    3.000
 CRI      H26    C23    H24     109.470    3.000
 CRI      H25    C23    H24     109.470    3.000
 CRI      C15    C16    H19     120.000    3.000
 CRI      C15    C16    C11     120.000    3.000
 CRI      H19    C16    C11     120.000    3.000
 CRI      C16    C11    C5      120.000    3.000
 CRI      C16    C11    C12     120.000    3.000
 CRI      C5     C11    C12     120.000    3.000
 CRI      C11    C5     C6      120.000    3.000
 CRI      C11    C5     C4      120.000    3.000
 CRI      C6     C5     C4      120.000    3.000
 CRI      C5     C6     H10     120.000    3.000
 CRI      C5     C6     C1      120.000    3.000
 CRI      H10    C6     C1      120.000    3.000
 CRI      C6     C1     H7      120.000    3.000
 CRI      C6     C1     C2      120.000    3.000
 CRI      H7     C1     C2      120.000    3.000
 CRI      C5     C4     H9      120.000    3.000
 CRI      C5     C4     C3      120.000    3.000
 CRI      H9     C4     C3      120.000    3.000
 CRI      C4     C3     H8      120.000    3.000
 CRI      C4     C3     C2      120.000    3.000
 CRI      H8     C3     C2      120.000    3.000
 CRI      C3     C2     C       120.000    3.000
 CRI      C3     C2     C1      120.000    3.000
 CRI      C      C2     C1      120.000    3.000
 CRI      C2     C      O       120.500    3.000
 CRI      C2     C      N       120.000    3.000
 CRI      O      C      N       123.000    3.000
 CRI      C      N      HN      120.000    3.000
 CRI      C      N      OH      120.000    3.000
 CRI      HN     N      OH      120.200    3.000
 CRI      N      OH     HO1     120.000    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 CRI      var_1    O34    C33    C40    C35        0.038   20.000   1
 CRI      CONST_1  C33    C40    C39    C38      180.000    0.000   0
 CRI      CONST_2  C40    C39    C38    C37        0.000    0.000   0
 CRI      CONST_3  C39    C38    C37    C36        0.000    0.000   0
 CRI      var_2    C38    C37    C45    H46      -89.945   20.000   1
 CRI      CONST_4  C38    C37    C36    C35        0.000    0.000   0
 CRI      CONST_5  C33    C40    C35    C36      180.000    0.000   0
 CRI      CONST_6  C40    C35    C36    C37        0.000    0.000   0
 CRI      CONST_7  O34    C33    N31    C13        0.000    0.000   0
 CRI      var_3    C33    N31    C13    C14     -146.298   20.000   1
 CRI      CONST_8  N31    C13    C12    C11      180.000    0.000   0
 CRI      CONST_9  N31    C13    C14    C15      180.000    0.000   0
 CRI      CONST_10 C13    C14    C15    C16        0.000    0.000   0
 CRI      var_4    C14    C15    C20    O21     -136.288   20.000   1
 CRI      CONST_11 C15    C20    N22    C23      180.000    0.000   0
 CRI      var_5    C20    N22    C27    H28        5.432   20.000   1
 CRI      var_6    C20    N22    C23    H24     -179.963   20.000   1
 CRI      CONST_12 C14    C15    C16    C11        0.000    0.000   0
 CRI      CONST_13 C15    C16    C11    C5       180.000    0.000   0
 CRI      CONST_14 C16    C11    C12    C13        0.000    0.000   0
 CRI      CONST_15 C16    C11    C5     C4       180.000    0.000   0
 CRI      CONST_16 C11    C5     C6     C1       180.000    0.000   0
 CRI      CONST_17 C5     C6     C1     C2         0.000    0.000   0
 CRI      CONST_18 C6     C1     C2     C3         0.000    0.000   0
 CRI      CONST_19 C11    C5     C4     C3       180.000    0.000   0
 CRI      CONST_20 C5     C4     C3     C2         0.000    0.000   0
 CRI      CONST_21 C4     C3     C2     C        180.000    0.000   0
 CRI      var_7    C3     C2     C      N        179.973   20.000   1
 CRI      CONST_22 C2     C      N      OH       180.000    0.000   0
 CRI      var_8    C      N      OH     HO1     -179.978   20.000   1
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 CRI      plan-1    N         0.020
 CRI      plan-1    OH        0.020
 CRI      plan-1    C         0.020
 CRI      plan-1    HN        0.020
 CRI      plan-2    C         0.020
 CRI      plan-2    N         0.020
 CRI      plan-2    O         0.020
 CRI      plan-2    C2        0.020
 CRI      plan-2    HN        0.020
 CRI      plan-3    C1        0.020
 CRI      plan-3    C2        0.020
 CRI      plan-3    C6        0.020
 CRI      plan-3    H7        0.020
 CRI      plan-3    C3        0.020
 CRI      plan-3    C4        0.020
 CRI      plan-3    C5        0.020
 CRI      plan-3    C         0.020
 CRI      plan-3    H8        0.020
 CRI      plan-3    H9        0.020
 CRI      plan-3    C11       0.020
 CRI      plan-3    H10       0.020
 CRI      plan-4    C11       0.020
 CRI      plan-4    C5        0.020
 CRI      plan-4    C12       0.020
 CRI      plan-4    C16       0.020
 CRI      plan-4    C13       0.020
 CRI      plan-4    C14       0.020
 CRI      plan-4    C15       0.020
 CRI      plan-4    H17       0.020
 CRI      plan-4    N31       0.020
 CRI      plan-4    H18       0.020
 CRI      plan-4    C20       0.020
 CRI      plan-4    H19       0.020
 CRI      plan-4    H32       0.020
 CRI      plan-5    C20       0.020
 CRI      plan-5    C15       0.020
 CRI      plan-5    O21       0.020
 CRI      plan-5    N22       0.020
 CRI      plan-6    N22       0.020
 CRI      plan-6    C20       0.020
 CRI      plan-6    C23       0.020
 CRI      plan-6    C27       0.020
 CRI      plan-7    N31       0.020
 CRI      plan-7    C13       0.020
 CRI      plan-7    C33       0.020
 CRI      plan-7    H32       0.020
 CRI      plan-8    C33       0.020
 CRI      plan-8    N31       0.020
 CRI      plan-8    O34       0.020
 CRI      plan-8    C40       0.020
 CRI      plan-8    H32       0.020
 CRI      plan-9    C35       0.020
 CRI      plan-9    C36       0.020
 CRI      plan-9    C40       0.020
 CRI      plan-9    H43       0.020
 CRI      plan-9    C37       0.020
 CRI      plan-9    C38       0.020
 CRI      plan-9    C39       0.020
 CRI      plan-9    H44       0.020
 CRI      plan-9    C45       0.020
 CRI      plan-9    H41       0.020
 CRI      plan-9    H42       0.020
 CRI      plan-9    C33       0.020
# ------------------------------------------------------