File: CXZ.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (373 lines) | stat: -rw-r--r-- 17,031 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
CXZ      CXZ '4-chloro-6-{5-[(2-morpholin-4-ylethy' non-polymer        47  27 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_CXZ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 CXZ           CL     CL   CL        0.000      0.000    0.000    0.000
 CXZ           C16    C    CR6       0.000     -0.777   -1.320   -0.819
 CXZ           C15    C    CR16      0.000     -1.991   -1.791   -0.365
 CXZ           H15    H    H         0.000     -2.459   -1.339    0.501
 CXZ           C17    C    CR6       0.000     -0.175   -1.896   -1.931
 CXZ           O4     O    OH1       0.000      1.021   -1.426   -2.374
 CXZ           HO4    H    H         0.000      1.737   -1.907   -1.937
 CXZ           C18    C    CR16      0.000     -0.791   -2.950   -2.590
 CXZ           H18    H    H         0.000     -0.320   -3.394   -3.459
 CXZ           C19    C    CR6       0.000     -2.005   -3.434   -2.138
 CXZ           O3     O    OH1       0.000     -2.606   -4.470   -2.779
 CXZ           HO3    H    H         0.000     -3.182   -4.127   -3.476
 CXZ           C14    C    CR6       0.000     -2.616   -2.851   -1.022
 CXZ           C13    C    CR5       0.000     -3.918   -3.360   -0.537
 CXZ           N3     N    NRD5      0.000     -4.244   -4.614   -0.358
 CXZ           O2     O    O2        0.000     -5.573   -4.696    0.115
 CXZ           C3     C    CR56      0.000     -6.088   -3.453    0.232
 CXZ           C2     C    CR16      0.000     -7.325   -2.974    0.644
 CXZ           H2     H    H         0.000     -8.098   -3.666    0.954
 CXZ           C4     C    CR56      0.000     -5.091   -2.550   -0.165
 CXZ           C5     C    CR16      0.000     -5.345   -1.179   -0.146
 CXZ           H5     H    H         0.000     -4.577   -0.479   -0.452
 CXZ           C6     C    CR6       0.000     -6.582   -0.718    0.266
 CXZ           C1     C    CR16      0.000     -7.569   -1.618    0.660
 CXZ           H1     H    H         0.000     -8.536   -1.250    0.980
 CXZ           N1     N    NH1       0.000     -6.842    0.657    0.287
 CXZ           HN1    H    H         0.000     -6.128    1.311    0.002
 CXZ           C7     C    CH2       0.000     -8.152    1.147    0.723
 CXZ           H7     H    H         0.000     -8.337    0.827    1.750
 CXZ           H7A    H    H         0.000     -8.928    0.740    0.071
 CXZ           C8     C    CH2       0.000     -8.174    2.676    0.651
 CXZ           H8     H    H         0.000     -7.988    2.994   -0.377
 CXZ           H8A    H    H         0.000     -7.397    3.081    1.302
 CXZ           N2     N    NT        0.000     -9.487    3.167    1.088
 CXZ           C12    C    CH2       0.000    -10.541    2.765    0.145
 CXZ           H12    H    H         0.000    -10.550    1.677    0.050
 CXZ           H12A   H    H         0.000    -10.347    3.213   -0.832
 CXZ           C11    C    CH2       0.000    -11.897    3.245    0.669
 CXZ           H11    H    H         0.000    -12.116    2.754    1.619
 CXZ           H11A   H    H         0.000    -12.677    2.997   -0.055
 CXZ           O1     O    O2        0.000    -11.854    4.663    0.860
 CXZ           C10    C    CH2       0.000    -10.839    5.089    1.773
 CXZ           H10    H    H         0.000    -11.027    4.654    2.757
 CXZ           H10A   H    H         0.000    -10.851    6.179    1.850
 CXZ           C9     C    CH2       0.000     -9.473    4.627    1.261
 CXZ           H9A    H    H         0.000     -8.701    4.902    1.983
 CXZ           H9     H    H         0.000     -9.261    5.106    0.303
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 CXZ      CL     n/a    C16    START
 CXZ      C16    CL     C17    .
 CXZ      C15    C16    H15    .
 CXZ      H15    C15    .      .
 CXZ      C17    C16    C18    .
 CXZ      O4     C17    HO4    .
 CXZ      HO4    O4     .      .
 CXZ      C18    C17    C19    .
 CXZ      H18    C18    .      .
 CXZ      C19    C18    C14    .
 CXZ      O3     C19    HO3    .
 CXZ      HO3    O3     .      .
 CXZ      C14    C19    C13    .
 CXZ      C13    C14    C4     .
 CXZ      N3     C13    O2     .
 CXZ      O2     N3     C3     .
 CXZ      C3     O2     C2     .
 CXZ      C2     C3     H2     .
 CXZ      H2     C2     .      .
 CXZ      C4     C13    C5     .
 CXZ      C5     C4     C6     .
 CXZ      H5     C5     .      .
 CXZ      C6     C5     N1     .
 CXZ      C1     C6     H1     .
 CXZ      H1     C1     .      .
 CXZ      N1     C6     C7     .
 CXZ      HN1    N1     .      .
 CXZ      C7     N1     C8     .
 CXZ      H7     C7     .      .
 CXZ      H7A    C7     .      .
 CXZ      C8     C7     N2     .
 CXZ      H8     C8     .      .
 CXZ      H8A    C8     .      .
 CXZ      N2     C8     C12    .
 CXZ      C12    N2     C11    .
 CXZ      H12    C12    .      .
 CXZ      H12A   C12    .      .
 CXZ      C11    C12    O1     .
 CXZ      H11    C11    .      .
 CXZ      H11A   C11    .      .
 CXZ      O1     C11    C10    .
 CXZ      C10    O1     C9     .
 CXZ      H10    C10    .      .
 CXZ      H10A   C10    .      .
 CXZ      C9     C10    H9     .
 CXZ      H9A    C9     .      .
 CXZ      H9     C9     .      END
 CXZ      C1     C2     .    ADD
 CXZ      C3     C4     .    ADD
 CXZ      N2     C9     .    ADD
 CXZ      C14    C15    .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 CXZ      C1     C2        double      1.390    0.020
 CXZ      C1     C6        single      1.390    0.020
 CXZ      C2     C3        single      1.390    0.020
 CXZ      C3     C4        double      1.490    0.020
 CXZ      C3     O2        single      1.329    0.020
 CXZ      C5     C4        single      1.390    0.020
 CXZ      C4     C13       single      1.490    0.020
 CXZ      C6     C5        double      1.390    0.020
 CXZ      N1     C6        single      1.350    0.020
 CXZ      C7     N1        single      1.450    0.020
 CXZ      C8     C7        single      1.524    0.020
 CXZ      N2     C8        single      1.469    0.020
 CXZ      N2     C9        single      1.469    0.020
 CXZ      C12    N2        single      1.469    0.020
 CXZ      C9     C10       single      1.524    0.020
 CXZ      C10    O1        single      1.426    0.020
 CXZ      O1     C11       single      1.426    0.020
 CXZ      C11    C12       single      1.524    0.020
 CXZ      N3     C13       double      1.350    0.020
 CXZ      C13    C14       single      1.490    0.020
 CXZ      O2     N3        single      1.337    0.020
 CXZ      C14    C15       double      1.390    0.020
 CXZ      C14    C19       single      1.487    0.020
 CXZ      C15    C16       single      1.390    0.020
 CXZ      C17    C16       double      1.487    0.020
 CXZ      C16    CL        single      1.795    0.020
 CXZ      C18    C17       single      1.390    0.020
 CXZ      O4     C17       single      1.362    0.020
 CXZ      C19    C18       double      1.390    0.020
 CXZ      O3     C19       single      1.362    0.020
 CXZ      H1     C1        single      1.083    0.020
 CXZ      H2     C2        single      1.083    0.020
 CXZ      H5     C5        single      1.083    0.020
 CXZ      HN1    N1        single      1.010    0.020
 CXZ      H7     C7        single      1.092    0.020
 CXZ      H7A    C7        single      1.092    0.020
 CXZ      H8     C8        single      1.092    0.020
 CXZ      H8A    C8        single      1.092    0.020
 CXZ      H9     C9        single      1.092    0.020
 CXZ      H9A    C9        single      1.092    0.020
 CXZ      H10    C10       single      1.092    0.020
 CXZ      H10A   C10       single      1.092    0.020
 CXZ      H11    C11       single      1.092    0.020
 CXZ      H11A   C11       single      1.092    0.020
 CXZ      H12    C12       single      1.092    0.020
 CXZ      H12A   C12       single      1.092    0.020
 CXZ      H15    C15       single      1.083    0.020
 CXZ      H18    C18       single      1.083    0.020
 CXZ      HO3    O3        single      0.967    0.020
 CXZ      HO4    O4        single      0.967    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 CXZ      CL     C16    C15     120.000    3.000
 CXZ      CL     C16    C17     120.000    3.000
 CXZ      C15    C16    C17     120.000    3.000
 CXZ      C16    C15    H15     120.000    3.000
 CXZ      C16    C15    C14     120.000    3.000
 CXZ      H15    C15    C14     120.000    3.000
 CXZ      C16    C17    O4      120.000    3.000
 CXZ      C16    C17    C18     120.000    3.000
 CXZ      O4     C17    C18     120.000    3.000
 CXZ      C17    O4     HO4     109.470    3.000
 CXZ      C17    C18    H18     120.000    3.000
 CXZ      C17    C18    C19     120.000    3.000
 CXZ      H18    C18    C19     120.000    3.000
 CXZ      C18    C19    O3      120.000    3.000
 CXZ      C18    C19    C14     120.000    3.000
 CXZ      O3     C19    C14     120.000    3.000
 CXZ      C19    O3     HO3     109.470    3.000
 CXZ      C19    C14    C13     120.000    3.000
 CXZ      C19    C14    C15     120.000    3.000
 CXZ      C13    C14    C15     120.000    3.000
 CXZ      C14    C13    N3      126.000    3.000
 CXZ      C14    C13    C4      126.000    3.000
 CXZ      N3     C13    C4      108.000    3.000
 CXZ      C13    N3     O2      108.000    3.000
 CXZ      N3     O2     C3      120.000    3.000
 CXZ      O2     C3     C2      120.000    3.000
 CXZ      O2     C3     C4      120.000    3.000
 CXZ      C2     C3     C4      120.000    3.000
 CXZ      C3     C2     H2      120.000    3.000
 CXZ      C3     C2     C1      120.000    3.000
 CXZ      H2     C2     C1      120.000    3.000
 CXZ      C13    C4     C5      126.000    3.000
 CXZ      C13    C4     C3      108.000    3.000
 CXZ      C5     C4     C3      120.000    3.000
 CXZ      C4     C5     H5      120.000    3.000
 CXZ      C4     C5     C6      120.000    3.000
 CXZ      H5     C5     C6      120.000    3.000
 CXZ      C5     C6     C1      120.000    3.000
 CXZ      C5     C6     N1      120.000    3.000
 CXZ      C1     C6     N1      120.000    3.000
 CXZ      C6     C1     H1      120.000    3.000
 CXZ      C6     C1     C2      120.000    3.000
 CXZ      H1     C1     C2      120.000    3.000
 CXZ      C6     N1     HN1     120.000    3.000
 CXZ      C6     N1     C7      120.000    3.000
 CXZ      HN1    N1     C7      118.500    3.000
 CXZ      N1     C7     H7      109.470    3.000
 CXZ      N1     C7     H7A     109.470    3.000
 CXZ      N1     C7     C8      112.000    3.000
 CXZ      H7     C7     H7A     107.900    3.000
 CXZ      H7     C7     C8      109.470    3.000
 CXZ      H7A    C7     C8      109.470    3.000
 CXZ      C7     C8     H8      109.470    3.000
 CXZ      C7     C8     H8A     109.470    3.000
 CXZ      C7     C8     N2      109.470    3.000
 CXZ      H8     C8     H8A     107.900    3.000
 CXZ      H8     C8     N2      109.470    3.000
 CXZ      H8A    C8     N2      109.470    3.000
 CXZ      C8     N2     C12     109.470    3.000
 CXZ      C8     N2     C9      109.470    3.000
 CXZ      C12    N2     C9      109.470    3.000
 CXZ      N2     C12    H12     109.470    3.000
 CXZ      N2     C12    H12A    109.470    3.000
 CXZ      N2     C12    C11     109.470    3.000
 CXZ      H12    C12    H12A    107.900    3.000
 CXZ      H12    C12    C11     109.470    3.000
 CXZ      H12A   C12    C11     109.470    3.000
 CXZ      C12    C11    H11     109.470    3.000
 CXZ      C12    C11    H11A    109.470    3.000
 CXZ      C12    C11    O1      109.470    3.000
 CXZ      H11    C11    H11A    107.900    3.000
 CXZ      H11    C11    O1      109.470    3.000
 CXZ      H11A   C11    O1      109.470    3.000
 CXZ      C11    O1     C10     111.800    3.000
 CXZ      O1     C10    H10     109.470    3.000
 CXZ      O1     C10    H10A    109.470    3.000
 CXZ      O1     C10    C9      109.470    3.000
 CXZ      H10    C10    H10A    107.900    3.000
 CXZ      H10    C10    C9      109.470    3.000
 CXZ      H10A   C10    C9      109.470    3.000
 CXZ      C10    C9     H9A     109.470    3.000
 CXZ      C10    C9     H9      109.470    3.000
 CXZ      C10    C9     N2      109.470    3.000
 CXZ      H9A    C9     H9      107.900    3.000
 CXZ      H9A    C9     N2      109.470    3.000
 CXZ      H9     C9     N2      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 CXZ      CONST_1  CL     C16    C15    C14      180.000    0.000   0
 CXZ      CONST_2  CL     C16    C17    C18      180.000    0.000   0
 CXZ      var_1    C16    C17    O4     HO4       90.003   20.000   1
 CXZ      CONST_3  C16    C17    C18    C19        0.000    0.000   0
 CXZ      CONST_4  C17    C18    C19    C14        0.000    0.000   0
 CXZ      var_2    C18    C19    O3     HO3      -89.736   20.000   1
 CXZ      CONST_5  C18    C19    C14    C13      180.000    0.000   0
 CXZ      CONST_6  C19    C14    C15    C16        0.000    0.000   0
 CXZ      var_3    C19    C14    C13    C4      -133.591   20.000   1
 CXZ      CONST_7  C14    C13    N3     O2       180.000    0.000   0
 CXZ      CONST_8  C13    N3     O2     C3         0.000    0.000   0
 CXZ      CONST_9  N3     O2     C3     C2       180.000    0.000   0
 CXZ      CONST_10 O2     C3     C4     C13        0.000    0.000   0
 CXZ      CONST_11 O2     C3     C2     C1       180.000    0.000   0
 CXZ      CONST_12 C14    C13    C4     C5         0.000    0.000   0
 CXZ      CONST_13 C13    C4     C5     C6       180.000    0.000   0
 CXZ      CONST_14 C4     C5     C6     N1       180.000    0.000   0
 CXZ      CONST_15 C5     C6     C1     C2         0.000    0.000   0
 CXZ      CONST_16 C6     C1     C2     C3         0.000    0.000   0
 CXZ      var_4    C5     C6     N1     C7       179.969   20.000   1
 CXZ      var_5    C6     N1     C7     C8      -179.995   20.000   3
 CXZ      var_6    N1     C7     C8     N2      -179.977   20.000   3
 CXZ      var_7    C7     C8     N2     C12      -66.416   20.000   1
 CXZ      var_8    C8     N2     C9     C10      180.000   20.000   1
 CXZ      var_9    C8     N2     C12    C11      180.000   20.000   1
 CXZ      var_10   N2     C12    C11    O1        60.000   20.000   3
 CXZ      var_11   C12    C11    O1     C10      -60.000   20.000   1
 CXZ      var_12   C11    O1     C10    C9        60.000   20.000   1
 CXZ      var_13   O1     C10    C9     N2       -60.000   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 CXZ      chir_01  N2     C8     C9     C12       negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 CXZ      plan-1    C1        0.020
 CXZ      plan-1    C2        0.020
 CXZ      plan-1    C6        0.020
 CXZ      plan-1    H1        0.020
 CXZ      plan-1    C5        0.020
 CXZ      plan-1    C3        0.020
 CXZ      plan-1    H2        0.020
 CXZ      plan-1    C4        0.020
 CXZ      plan-1    O2        0.020
 CXZ      plan-1    C13       0.020
 CXZ      plan-1    N3        0.020
 CXZ      plan-1    H5        0.020
 CXZ      plan-1    N1        0.020
 CXZ      plan-1    C14       0.020
 CXZ      plan-1    HN1       0.020
 CXZ      plan-2    N1        0.020
 CXZ      plan-2    C6        0.020
 CXZ      plan-2    C7        0.020
 CXZ      plan-2    HN1       0.020
 CXZ      plan-3    C14       0.020
 CXZ      plan-3    C13       0.020
 CXZ      plan-3    C15       0.020
 CXZ      plan-3    C19       0.020
 CXZ      plan-3    C16       0.020
 CXZ      plan-3    C17       0.020
 CXZ      plan-3    C18       0.020
 CXZ      plan-3    H15       0.020
 CXZ      plan-3    CL        0.020
 CXZ      plan-3    O4        0.020
 CXZ      plan-3    H18       0.020
 CXZ      plan-3    O3        0.020
# ------------------------------------------------------