File: DIK.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (340 lines) | stat: -rw-r--r-- 15,332 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
DIK      DIK '5-{[4-(5-methyl-3-oxohex-4-en-1-yl)p' non-polymer        45  23 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_DIK
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 DIK           O4     O    OC       -0.500      0.000    0.000    0.000
 DIK           C17    C    C         0.000     -1.242   -0.139    0.046
 DIK           O3     O    OC       -0.500     -1.738   -1.261    0.290
 DIK           C16    C    CH2       0.000     -2.142    1.046   -0.194
 DIK           H16    H    H         0.000     -1.957    1.446   -1.193
 DIK           H16A   H    H         0.000     -1.934    1.818    0.550
 DIK           C15    C    CH2       0.000     -3.604    0.608   -0.081
 DIK           H15    H    H         0.000     -3.787    0.206    0.918
 DIK           H15A   H    H         0.000     -3.811   -0.164   -0.825
 DIK           C14    C    CH2       0.000     -4.517    1.812   -0.324
 DIK           H14    H    H         0.000     -4.332    2.213   -1.322
 DIK           H14A   H    H         0.000     -4.309    2.582    0.421
 DIK           C13    C    C         0.000     -5.957    1.379   -0.214
 DIK           O2     O    O         0.000     -6.226    0.223    0.036
 DIK           N1     N    NH1       0.000     -6.946    2.278   -0.390
 DIK           HN1    H    H         0.000     -6.727    3.217   -0.691
 DIK           C12    C    CR6       0.000     -8.275    1.910   -0.158
 DIK           C9     C    CR16      0.000     -8.592    1.085    0.913
 DIK           H9     H    H         0.000     -7.810    0.724    1.570
 DIK           C8     C    CR16      0.000     -9.905    0.723    1.140
 DIK           H8     H    H         0.000    -10.153    0.079    1.974
 DIK           C11    C    CR16      0.000     -9.281    2.366   -1.000
 DIK           H11    H    H         0.000     -9.037    3.006   -1.838
 DIK           C10    C    CR16      0.000    -10.593    2.001   -0.767
 DIK           H10    H    H         0.000    -11.377    2.355   -1.424
 DIK           C7     C    CR6       0.000    -10.905    1.184    0.302
 DIK           C6     C    CH2       0.000    -12.338    0.787    0.553
 DIK           H6     H    H         0.000    -13.001    1.580    0.203
 DIK           H6A    H    H         0.000    -12.490    0.633    1.624
 DIK           C5     C    CH2       0.000    -12.647   -0.508   -0.199
 DIK           H5     H    H         0.000    -11.982   -1.300    0.152
 DIK           H5A    H    H         0.000    -12.493   -0.353   -1.268
 DIK           C4     C    C         0.000    -14.079   -0.905    0.053
 DIK           O1     O    O         0.000    -14.783   -0.217    0.763
 DIK           C3     C    C1        0.000    -14.621   -2.117   -0.561
 DIK           H3     H    H         0.000    -14.027   -2.676   -1.264
 DIK           C2     C    C         0.000    -15.851   -2.530   -0.248
 DIK           C18    C    CH3       0.000    -16.473   -3.678   -1.001
 DIK           H23    H    H         0.000    -15.714   -4.340   -1.330
 DIK           H22    H    H         0.000    -17.142   -4.199   -0.365
 DIK           H21    H    H         0.000    -17.004   -3.306   -1.840
 DIK           C1     C    CH3       0.000    -16.617   -1.849    0.855
 DIK           H1B    H    H         0.000    -17.344   -2.513    1.245
 DIK           H1A    H    H         0.000    -15.950   -1.566    1.628
 DIK           H1     H    H         0.000    -17.098   -0.986    0.473
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 DIK      O4     n/a    C17    START
 DIK      C17    O4     C16    .
 DIK      O3     C17    .      .
 DIK      C16    C17    C15    .
 DIK      H16    C16    .      .
 DIK      H16A   C16    .      .
 DIK      C15    C16    C14    .
 DIK      H15    C15    .      .
 DIK      H15A   C15    .      .
 DIK      C14    C15    C13    .
 DIK      H14    C14    .      .
 DIK      H14A   C14    .      .
 DIK      C13    C14    N1     .
 DIK      O2     C13    .      .
 DIK      N1     C13    C12    .
 DIK      HN1    N1     .      .
 DIK      C12    N1     C11    .
 DIK      C9     C12    C8     .
 DIK      H9     C9     .      .
 DIK      C8     C9     H8     .
 DIK      H8     C8     .      .
 DIK      C11    C12    C10    .
 DIK      H11    C11    .      .
 DIK      C10    C11    C7     .
 DIK      H10    C10    .      .
 DIK      C7     C10    C6     .
 DIK      C6     C7     C5     .
 DIK      H6     C6     .      .
 DIK      H6A    C6     .      .
 DIK      C5     C6     C4     .
 DIK      H5     C5     .      .
 DIK      H5A    C5     .      .
 DIK      C4     C5     C3     .
 DIK      O1     C4     .      .
 DIK      C3     C4     C2     .
 DIK      H3     C3     .      .
 DIK      C2     C3     C1     .
 DIK      C18    C2     H21    .
 DIK      H23    C18    .      .
 DIK      H22    C18    .      .
 DIK      H21    C18    .      .
 DIK      C1     C2     H1     .
 DIK      H1B    C1     .      .
 DIK      H1A    C1     .      .
 DIK      H1     C1     .      END
 DIK      C7     C8     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 DIK      C1     C2        single      1.500    0.020
 DIK      H1     C1        single      1.059    0.020
 DIK      H1A    C1        single      1.059    0.020
 DIK      H1B    C1        single      1.059    0.020
 DIK      C2     C3        double      1.340    0.020
 DIK      C18    C2        single      1.500    0.020
 DIK      C3     C4        single      1.475    0.020
 DIK      H3     C3        single      1.077    0.020
 DIK      O1     C4        double      1.220    0.020
 DIK      C4     C5        single      1.510    0.020
 DIK      H5     C5        single      1.092    0.020
 DIK      H5A    C5        single      1.092    0.020
 DIK      C5     C6        single      1.524    0.020
 DIK      C6     C7        single      1.511    0.020
 DIK      H6     C6        single      1.092    0.020
 DIK      H6A    C6        single      1.092    0.020
 DIK      C7     C10       single      1.390    0.020
 DIK      C7     C8        double      1.390    0.020
 DIK      C8     C9        single      1.390    0.020
 DIK      H8     C8        single      1.083    0.020
 DIK      C9     C12       double      1.390    0.020
 DIK      H9     C9        single      1.083    0.020
 DIK      C10    C11       double      1.390    0.020
 DIK      H10    C10       single      1.083    0.020
 DIK      H11    C11       single      1.083    0.020
 DIK      C11    C12       single      1.390    0.020
 DIK      C12    N1        single      1.350    0.020
 DIK      HN1    N1        single      1.010    0.020
 DIK      N1     C13       single      1.330    0.020
 DIK      C13    C14       single      1.510    0.020
 DIK      O2     C13       double      1.220    0.020
 DIK      C14    C15       single      1.524    0.020
 DIK      H14    C14       single      1.092    0.020
 DIK      H14A   C14       single      1.092    0.020
 DIK      C15    C16       single      1.524    0.020
 DIK      H15    C15       single      1.092    0.020
 DIK      H15A   C15       single      1.092    0.020
 DIK      C16    C17       single      1.510    0.020
 DIK      H16    C16       single      1.092    0.020
 DIK      H16A   C16       single      1.092    0.020
 DIK      O3     C17       deloc       1.250    0.020
 DIK      C17    O4        deloc       1.250    0.020
 DIK      H21    C18       single      1.059    0.020
 DIK      H22    C18       single      1.059    0.020
 DIK      H23    C18       single      1.059    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 DIK      O4     C17    O3      123.000    3.000
 DIK      O4     C17    C16     118.500    3.000
 DIK      O3     C17    C16     118.500    3.000
 DIK      C17    C16    H16     109.470    3.000
 DIK      C17    C16    H16A    109.470    3.000
 DIK      C17    C16    C15     109.470    3.000
 DIK      H16    C16    H16A    107.900    3.000
 DIK      H16    C16    C15     109.470    3.000
 DIK      H16A   C16    C15     109.470    3.000
 DIK      C16    C15    H15     109.470    3.000
 DIK      C16    C15    H15A    109.470    3.000
 DIK      C16    C15    C14     111.000    3.000
 DIK      H15    C15    H15A    107.900    3.000
 DIK      H15    C15    C14     109.470    3.000
 DIK      H15A   C15    C14     109.470    3.000
 DIK      C15    C14    H14     109.470    3.000
 DIK      C15    C14    H14A    109.470    3.000
 DIK      C15    C14    C13     109.470    3.000
 DIK      H14    C14    H14A    107.900    3.000
 DIK      H14    C14    C13     109.470    3.000
 DIK      H14A   C14    C13     109.470    3.000
 DIK      C14    C13    O2      120.500    3.000
 DIK      C14    C13    N1      116.500    3.000
 DIK      O2     C13    N1      123.000    3.000
 DIK      C13    N1     HN1     120.000    3.000
 DIK      C13    N1     C12     120.000    3.000
 DIK      HN1    N1     C12     120.000    3.000
 DIK      N1     C12    C9      120.000    3.000
 DIK      N1     C12    C11     120.000    3.000
 DIK      C9     C12    C11     120.000    3.000
 DIK      C12    C9     H9      120.000    3.000
 DIK      C12    C9     C8      120.000    3.000
 DIK      H9     C9     C8      120.000    3.000
 DIK      C9     C8     H8      120.000    3.000
 DIK      C9     C8     C7      120.000    3.000
 DIK      H8     C8     C7      120.000    3.000
 DIK      C12    C11    H11     120.000    3.000
 DIK      C12    C11    C10     120.000    3.000
 DIK      H11    C11    C10     120.000    3.000
 DIK      C11    C10    H10     120.000    3.000
 DIK      C11    C10    C7      120.000    3.000
 DIK      H10    C10    C7      120.000    3.000
 DIK      C10    C7     C6      120.000    3.000
 DIK      C10    C7     C8      120.000    3.000
 DIK      C6     C7     C8      120.000    3.000
 DIK      C7     C6     H6      109.470    3.000
 DIK      C7     C6     H6A     109.470    3.000
 DIK      C7     C6     C5      109.470    3.000
 DIK      H6     C6     H6A     107.900    3.000
 DIK      H6     C6     C5      109.470    3.000
 DIK      H6A    C6     C5      109.470    3.000
 DIK      C6     C5     H5      109.470    3.000
 DIK      C6     C5     H5A     109.470    3.000
 DIK      C6     C5     C4      109.470    3.000
 DIK      H5     C5     H5A     107.900    3.000
 DIK      H5     C5     C4      109.470    3.000
 DIK      H5A    C5     C4      109.470    3.000
 DIK      C5     C4     O1      120.500    3.000
 DIK      C5     C4     C3      120.000    3.000
 DIK      O1     C4     C3      120.500    3.000
 DIK      C4     C3     H3      120.000    3.000
 DIK      C4     C3     C2      120.000    3.000
 DIK      H3     C3     C2      120.000    3.000
 DIK      C3     C2     C18     120.000    3.000
 DIK      C3     C2     C1      120.000    3.000
 DIK      C18    C2     C1      120.000    3.000
 DIK      C2     C18    H23     109.470    3.000
 DIK      C2     C18    H22     109.470    3.000
 DIK      C2     C18    H21     109.470    3.000
 DIK      H23    C18    H22     109.470    3.000
 DIK      H23    C18    H21     109.470    3.000
 DIK      H22    C18    H21     109.470    3.000
 DIK      C2     C1     H1B     109.470    3.000
 DIK      C2     C1     H1A     109.470    3.000
 DIK      C2     C1     H1      109.470    3.000
 DIK      H1B    C1     H1A     109.470    3.000
 DIK      H1B    C1     H1      109.470    3.000
 DIK      H1A    C1     H1      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 DIK      var_1    O4     C17    C16    C15     -179.989   20.000   3
 DIK      var_2    C17    C16    C15    C14      179.963   20.000   3
 DIK      var_3    C16    C15    C14    C13      179.944   20.000   3
 DIK      var_4    C15    C14    C13    N1       179.956   20.000   3
 DIK      CONST_1  C14    C13    N1     C12      180.000    0.000   0
 DIK      var_5    C13    N1     C12    C11     -140.563   20.000   1
 DIK      CONST_2  N1     C12    C9     C8       180.000    0.000   0
 DIK      CONST_3  C12    C9     C8     C7         0.000    0.000   0
 DIK      CONST_4  N1     C12    C11    C10      180.000    0.000   0
 DIK      CONST_5  C12    C11    C10    C7         0.000    0.000   0
 DIK      CONST_6  C11    C10    C7     C6       180.000    0.000   0
 DIK      CONST_7  C10    C7     C8     C9         0.000    0.000   0
 DIK      var_6    C10    C7     C6     C5        89.961   20.000   2
 DIK      var_7    C7     C6     C5     C4       180.000   20.000   3
 DIK      var_8    C6     C5     C4     C3       179.988   20.000   3
 DIK      var_9    C5     C4     C3     C2       174.267   20.000   1
 DIK      CONST_8  C4     C3     C2     C1        -7.436    0.000   0
 DIK      var_10   C3     C2     C18    H21      -90.027   20.000   1
 DIK      var_11   C3     C2     C1     H1        83.998   20.000   1
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 DIK      plan-1    C2        0.020
 DIK      plan-1    C1        0.020
 DIK      plan-1    C3        0.020
 DIK      plan-1    C18       0.020
 DIK      plan-1    C4        0.020
 DIK      plan-1    H3        0.020
 DIK      plan-2    C4        0.020
 DIK      plan-2    C3        0.020
 DIK      plan-2    O1        0.020
 DIK      plan-2    C5        0.020
 DIK      plan-2    H3        0.020
 DIK      plan-3    C7        0.020
 DIK      plan-3    C6        0.020
 DIK      plan-3    C8        0.020
 DIK      plan-3    C10       0.020
 DIK      plan-3    C9        0.020
 DIK      plan-3    C11       0.020
 DIK      plan-3    C12       0.020
 DIK      plan-3    H8        0.020
 DIK      plan-3    H9        0.020
 DIK      plan-3    H10       0.020
 DIK      plan-3    H11       0.020
 DIK      plan-3    N1        0.020
 DIK      plan-3    HN1       0.020
 DIK      plan-4    N1        0.020
 DIK      plan-4    C12       0.020
 DIK      plan-4    C13       0.020
 DIK      plan-4    HN1       0.020
 DIK      plan-5    C13       0.020
 DIK      plan-5    N1        0.020
 DIK      plan-5    O2        0.020
 DIK      plan-5    C14       0.020
 DIK      plan-5    HN1       0.020
 DIK      plan-6    C17       0.020
 DIK      plan-6    C16       0.020
 DIK      plan-6    O3        0.020
 DIK      plan-6    O4        0.020
# ------------------------------------------------------