File: DIO.cif

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global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
DIO      DIO '1,4-DIETHYLENE DIOXIDE              ' non-polymer        14   6 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_DIO
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 DIO           "H2'2" H    H         0.000      0.001    0.002   -0.002
 DIO           "C2'"  C    CH2       0.000     -1.035   -0.315    0.128
 DIO           "H2'1" H    H         0.000     -1.086   -1.406    0.103
 DIO           "O1'"  O    O2        0.000     -1.830    0.220   -0.929
 DIO           "C1'"  C    CH2       0.000     -3.163   -0.248   -0.727
 DIO           "H1'2" H    H         0.000     -3.167   -1.340   -0.734
 DIO           "H1'1" H    H         0.000     -3.802    0.122   -1.531
 DIO           C2     C    CH2       0.000     -1.559    0.189    1.472
 DIO           H21    H    H         0.000     -1.551    1.281    1.476
 DIO           H22    H    H         0.000     -0.916   -0.181    2.273
 DIO           O1     O    O2        0.000     -2.892   -0.279    1.675
 DIO           C1     C    CH2       0.000     -3.687    0.257    0.617
 DIO           H12    H    H         0.000     -3.635    1.347    0.643
 DIO           H11    H    H         0.000     -4.723   -0.061    0.747
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 DIO      "H2'2" n/a    "C2'"  START
 DIO      "C2'"  "H2'2" C2     .
 DIO      "H2'1" "C2'"  .      .
 DIO      "O1'"  "C2'"  "C1'"  .
 DIO      "C1'"  "O1'"  "H1'1" .
 DIO      "H1'2" "C1'"  .      .
 DIO      "H1'1" "C1'"  .      .
 DIO      C2     "C2'"  O1     .
 DIO      H21    C2     .      .
 DIO      H22    C2     .      .
 DIO      O1     C2     C1     .
 DIO      C1     O1     H11    .
 DIO      H12    C1     .      .
 DIO      H11    C1     .      END
 DIO      C1     "C1'"  .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 DIO      C1     "C1'"     single      1.524    0.020
 DIO      C1     O1        single      1.426    0.020
 DIO      H11    C1        single      1.092    0.020
 DIO      H12    C1        single      1.092    0.020
 DIO      C2     "C2'"     single      1.524    0.020
 DIO      O1     C2        single      1.426    0.020
 DIO      H21    C2        single      1.092    0.020
 DIO      H22    C2        single      1.092    0.020
 DIO      "C1'"  "O1'"     single      1.426    0.020
 DIO      "H1'1" "C1'"     single      1.092    0.020
 DIO      "H1'2" "C1'"     single      1.092    0.020
 DIO      "O1'"  "C2'"     single      1.426    0.020
 DIO      "H2'1" "C2'"     single      1.092    0.020
 DIO      "C2'"  "H2'2"    single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 DIO      "H2'2" "C2'"  "H2'1"  107.900    3.000
 DIO      "H2'2" "C2'"  "O1'"   109.470    3.000
 DIO      "H2'2" "C2'"  C2      109.470    3.000
 DIO      "H2'1" "C2'"  "O1'"   109.470    3.000
 DIO      "H2'1" "C2'"  C2      109.470    3.000
 DIO      "O1'"  "C2'"  C2      109.470    3.000
 DIO      "C2'"  "O1'"  "C1'"   111.800    3.000
 DIO      "O1'"  "C1'"  "H1'2"  109.470    3.000
 DIO      "O1'"  "C1'"  "H1'1"  109.470    3.000
 DIO      "O1'"  "C1'"  C1      109.470    3.000
 DIO      "H1'2" "C1'"  "H1'1"  107.900    3.000
 DIO      "H1'2" "C1'"  C1      109.470    3.000
 DIO      "H1'1" "C1'"  C1      109.470    3.000
 DIO      "C2'"  C2     H21     109.470    3.000
 DIO      "C2'"  C2     H22     109.470    3.000
 DIO      "C2'"  C2     O1      109.470    3.000
 DIO      H21    C2     H22     107.900    3.000
 DIO      H21    C2     O1      109.470    3.000
 DIO      H22    C2     O1      109.470    3.000
 DIO      C2     O1     C1      111.800    3.000
 DIO      O1     C1     H12     109.470    3.000
 DIO      O1     C1     H11     109.470    3.000
 DIO      O1     C1     "C1'"   109.470    3.000
 DIO      H12    C1     H11     107.900    3.000
 DIO      H12    C1     "C1'"   109.470    3.000
 DIO      H11    C1     "C1'"   109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 DIO      var_1    "H2'2" "C2'"  "O1'"  "C1'"    180.000   20.000   1
 DIO      var_2    "C2'"  "O1'"  "C1'"  C1        60.000   20.000   1
 DIO      var_3    "H2'2" "C2'"  C2     O1       180.000   20.000   3
 DIO      var_4    "C2'"  C2     O1     C1       -60.000   20.000   1
 DIO      var_5    C2     O1     C1     "C1'"     60.000   20.000   1
 DIO      var_6    O1     C1     "C1'"  "O1'"    -60.000   20.000   3
# ------------------------------------------------------