File: DMF.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (135 lines) | stat: -rw-r--r-- 4,930 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
DMF      DMF 'DIMETHYLFORMAMIDE                   ' non-polymer        12   5 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_DMF
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 DMF           O      O    O         0.000      0.000    0.000    0.000
 DMF           C      C    C1        0.000     -1.212    0.000   -0.056
 DMF           HC     H    H         0.000     -1.707    0.000   -1.012
 DMF           N      N    N         0.000     -1.938    0.000    1.079
 DMF           C2     C    CH3       0.000     -1.265    0.000    2.379
 DMF           H23    H    H         0.000     -1.546    0.865    2.924
 DMF           H22    H    H         0.000     -1.546   -0.865    2.924
 DMF           H21    H    H         0.000     -0.215    0.000    2.236
 DMF           C1     C    CH3       0.000     -3.401    0.000    1.011
 DMF           H13    H    H         0.000     -3.803    0.000    1.992
 DMF           H12    H    H         0.000     -3.733    0.865    0.496
 DMF           H11    H    H         0.000     -3.733   -0.865    0.496
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 DMF      O      n/a    C      START
 DMF      C      O      N      .
 DMF      HC     C      .      .
 DMF      N      C      C1     .
 DMF      C2     N      H21    .
 DMF      H23    C2     .      .
 DMF      H22    C2     .      .
 DMF      H21    C2     .      .
 DMF      C1     N      H11    .
 DMF      H13    C1     .      .
 DMF      H12    C1     .      .
 DMF      H11    C1     .      END
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 DMF      C1     N         single      1.455    0.020
 DMF      H11    C1        single      1.059    0.020
 DMF      H12    C1        single      1.059    0.020
 DMF      H13    C1        single      1.059    0.020
 DMF      C2     N         single      1.455    0.020
 DMF      H21    C2        single      1.059    0.020
 DMF      H22    C2        single      1.059    0.020
 DMF      H23    C2        single      1.059    0.020
 DMF      C      O         double      1.220    0.020
 DMF      N      C         single      1.260    0.020
 DMF      HC     C         single      1.077    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 DMF      O      C      HC      123.000    3.000
 DMF      O      C      N       120.000    3.000
 DMF      HC     C      N       120.000    3.000
 DMF      C      N      C2      120.000    3.000
 DMF      C      N      C1      120.000    3.000
 DMF      C2     N      C1      120.000    3.000
 DMF      N      C2     H23     109.470    3.000
 DMF      N      C2     H22     109.470    3.000
 DMF      N      C2     H21     109.470    3.000
 DMF      H23    C2     H22     109.470    3.000
 DMF      H23    C2     H21     109.470    3.000
 DMF      H22    C2     H21     109.470    3.000
 DMF      N      C1     H13     109.470    3.000
 DMF      N      C1     H12     109.470    3.000
 DMF      N      C1     H11     109.470    3.000
 DMF      H13    C1     H12     109.470    3.000
 DMF      H13    C1     H11     109.470    3.000
 DMF      H12    C1     H11     109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 DMF      var_1    O      C      N      C1       180.000   20.000   1
 DMF      var_2    C      N      C2     H21        0.000   20.000   1
 DMF      var_3    C      N      C1     H11       60.002   20.000   1
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 DMF      plan-1    C         0.020
 DMF      plan-1    O         0.020
 DMF      plan-1    N         0.020
 DMF      plan-1    HC        0.020
 DMF      plan-2    N         0.020
 DMF      plan-2    C1        0.020
 DMF      plan-2    C2        0.020
 DMF      plan-2    C         0.020
 DMF      plan-2    HC        0.020
# ------------------------------------------------------