File: DT2.cif

package info (click to toggle)
refmac-dictionary 5.41-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 217,852 kB
file content (389 lines) | stat: -rw-r--r-- 17,698 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
global_
_lib_name         ?
_lib_version      ?
_lib_update       ?
# ------------------------------------------------
#
# ---   LIST OF MONOMERS ---
#
data_comp_list
loop_
_chem_comp.id
_chem_comp.three_letter_code
_chem_comp.name
_chem_comp.group
_chem_comp.number_atoms_all
_chem_comp.number_atoms_nh
_chem_comp.desc_level
DT2      DT2 '4-{[5-(CYCLOHEXYLAMINO)[1,2,4]TRIAZO' non-polymer        48  27 .
# ------------------------------------------------------
# ------------------------------------------------------
#
# --- DESCRIPTION OF MONOMERS ---
#
data_comp_DT2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.type_energy
_chem_comp_atom.partial_charge
_chem_comp_atom.x
_chem_comp_atom.y
_chem_comp_atom.z
 DT2           O3     O    OS        0.000      0.000    0.000    0.000
 DT2           S1     S    ST        0.000     -0.968    0.500   -0.912
 DT2           O2     O    OS        0.000     -1.208   -0.009   -2.217
 DT2           N6     N    NH2       0.000     -0.609    2.105   -1.114
 DT2           H6N2   H    H         0.000      0.248    2.394   -1.583
 DT2           H6N1   H    H         0.000     -1.240    2.829   -0.772
 DT2           C16    C    CR6       0.000     -2.512    0.407   -0.070
 DT2           C17    C    CR16      0.000     -2.543    0.368    1.312
 DT2           H17    H    H         0.000     -1.618    0.391    1.875
 DT2           C18    C    CR16      0.000     -3.753    0.301    1.975
 DT2           H18    H    H         0.000     -3.777    0.278    3.058
 DT2           C13    C    CR6       0.000     -4.939    0.261    1.252
 DT2           C14    C    CR16      0.000     -4.904    0.293   -0.136
 DT2           H14    H    H         0.000     -5.826    0.261   -0.702
 DT2           C15    C    CR16      0.000     -3.691    0.367   -0.793
 DT2           H15    H    H         0.000     -3.663    0.393   -1.875
 DT2           N5     N    NH1       0.000     -6.165    0.186    1.920
 DT2           H5     H    H         0.000     -6.187    0.055    2.921
 DT2           C9     C    CR6       0.000     -7.343    0.292    1.213
 DT2           C8     C    CR16      0.000     -8.271   -0.711    1.255
 DT2           H8     H    H         0.000     -8.091   -1.601    1.846
 DT2           C7     C    CR6       0.000     -9.459   -0.573    0.524
 DT2           N1     N    NRD6      0.000     -9.675    0.516   -0.197
 DT2           C10    C    CR56      0.000     -8.772    1.501   -0.244
 DT2           N4     N    NRD5      0.000     -8.751    2.669   -0.878
 DT2           C11    C    CR15      0.000     -7.619    3.306   -0.606
 DT2           H11    H    H         0.000     -7.342    4.280   -0.992
 DT2           N3     N    NRD5      0.000     -6.886    2.578    0.200
 DT2           N2     N    NR56      0.000     -7.605    1.404    0.460
 DT2           N7     N    NH1       0.000    -10.409   -1.578    0.555
 DT2           H7     H    H         0.000    -10.246   -2.410    1.105
 DT2           C1     C    CH1       0.000    -11.652   -1.437   -0.208
 DT2           H1     H    H         0.000    -11.447   -0.901   -1.145
 DT2           C6     C    CH2       0.000    -12.671   -0.649    0.618
 DT2           H6C1   H    H         0.000    -12.268    0.340    0.847
 DT2           H6C2   H    H         0.000    -12.874   -1.182    1.550
 DT2           C5     C    CH2       0.000    -13.969   -0.501   -0.180
 DT2           H5C1   H    H         0.000    -13.764    0.033   -1.111
 DT2           H5C2   H    H         0.000    -14.696    0.063    0.409
 DT2           C4     C    CH2       0.000    -14.532   -1.887   -0.498
 DT2           H4C1   H    H         0.000    -15.459   -1.781   -1.066
 DT2           H4C2   H    H         0.000    -14.737   -2.418    0.434
 DT2           C3     C    CH2       0.000    -13.514   -2.675   -1.323
 DT2           H3C1   H    H         0.000    -13.311   -2.143   -2.255
 DT2           H3C2   H    H         0.000    -13.917   -3.664   -1.550
 DT2           C2     C    CH2       0.000    -12.216   -2.823   -0.526
 DT2           H2C2   H    H         0.000    -11.490   -3.386   -1.115
 DT2           H2C1   H    H         0.000    -12.421   -3.356    0.405
loop_
_chem_comp_tree.comp_id
_chem_comp_tree.atom_id
_chem_comp_tree.atom_back
_chem_comp_tree.atom_forward
_chem_comp_tree.connect_type
 DT2      O3     n/a    S1     START
 DT2      S1     O3     C16    .
 DT2      O2     S1     .      .
 DT2      N6     S1     H6N1   .
 DT2      H6N2   N6     .      .
 DT2      H6N1   N6     .      .
 DT2      C16    S1     C17    .
 DT2      C17    C16    C18    .
 DT2      H17    C17    .      .
 DT2      C18    C17    C13    .
 DT2      H18    C18    .      .
 DT2      C13    C18    N5     .
 DT2      C14    C13    C15    .
 DT2      H14    C14    .      .
 DT2      C15    C14    H15    .
 DT2      H15    C15    .      .
 DT2      N5     C13    C9     .
 DT2      H5     N5     .      .
 DT2      C9     N5     C8     .
 DT2      C8     C9     C7     .
 DT2      H8     C8     .      .
 DT2      C7     C8     N7     .
 DT2      N1     C7     C10    .
 DT2      C10    N1     N2     .
 DT2      N4     C10    C11    .
 DT2      C11    N4     N3     .
 DT2      H11    C11    .      .
 DT2      N3     C11    .      .
 DT2      N2     C10    .      .
 DT2      N7     C7     C1     .
 DT2      H7     N7     .      .
 DT2      C1     N7     C6     .
 DT2      H1     C1     .      .
 DT2      C6     C1     C5     .
 DT2      H6C1   C6     .      .
 DT2      H6C2   C6     .      .
 DT2      C5     C6     C4     .
 DT2      H5C1   C5     .      .
 DT2      H5C2   C5     .      .
 DT2      C4     C5     C3     .
 DT2      H4C1   C4     .      .
 DT2      H4C2   C4     .      .
 DT2      C3     C4     C2     .
 DT2      H3C1   C3     .      .
 DT2      H3C2   C3     .      .
 DT2      C2     C3     H2C1   .
 DT2      H2C2   C2     .      .
 DT2      H2C1   C2     .      END
 DT2      C16    C15    .    ADD
 DT2      C9     N2     .    ADD
 DT2      N2     N3     .    ADD
 DT2      C1     C2     .    ADD
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.type
_chem_comp_bond.value_dist
_chem_comp_bond.value_dist_esd
 DT2      O2     S1        double      1.436    0.020
 DT2      S1     O3        double      1.436    0.020
 DT2      N6     S1        single      1.600    0.020
 DT2      C16    S1        single      1.595    0.020
 DT2      H6N1   N6        single      1.010    0.020
 DT2      H6N2   N6        single      1.010    0.020
 DT2      C16    C15       double      1.390    0.020
 DT2      C17    C16       single      1.390    0.020
 DT2      C15    C14       single      1.390    0.020
 DT2      H15    C15       single      1.083    0.020
 DT2      C14    C13       double      1.390    0.020
 DT2      H14    C14       single      1.083    0.020
 DT2      C13    C18       single      1.390    0.020
 DT2      N5     C13       single      1.350    0.020
 DT2      C18    C17       double      1.390    0.020
 DT2      H18    C18       single      1.083    0.020
 DT2      H17    C17       single      1.083    0.020
 DT2      C9     N5        single      1.350    0.020
 DT2      H5     N5        single      1.010    0.020
 DT2      C9     N2        single      1.337    0.020
 DT2      C8     C9        double      1.390    0.020
 DT2      N2     N3        single      1.402    0.020
 DT2      N2     C10       single      1.337    0.020
 DT2      N3     C11       double      1.350    0.020
 DT2      C11    N4        single      1.350    0.020
 DT2      H11    C11       single      1.083    0.020
 DT2      N4     C10       double      1.350    0.020
 DT2      C10    N1        single      1.355    0.020
 DT2      N1     C7        double      1.350    0.020
 DT2      C7     C8        single      1.390    0.020
 DT2      N7     C7        single      1.350    0.020
 DT2      H8     C8        single      1.083    0.020
 DT2      C1     N7        single      1.450    0.020
 DT2      H7     N7        single      1.010    0.020
 DT2      C1     C2        single      1.524    0.020
 DT2      C6     C1        single      1.524    0.020
 DT2      H1     C1        single      1.099    0.020
 DT2      C2     C3        single      1.524    0.020
 DT2      H2C1   C2        single      1.092    0.020
 DT2      H2C2   C2        single      1.092    0.020
 DT2      C3     C4        single      1.524    0.020
 DT2      H3C1   C3        single      1.092    0.020
 DT2      H3C2   C3        single      1.092    0.020
 DT2      C4     C5        single      1.524    0.020
 DT2      H4C1   C4        single      1.092    0.020
 DT2      H4C2   C4        single      1.092    0.020
 DT2      C5     C6        single      1.524    0.020
 DT2      H5C1   C5        single      1.092    0.020
 DT2      H5C2   C5        single      1.092    0.020
 DT2      H6C1   C6        single      1.092    0.020
 DT2      H6C2   C6        single      1.092    0.020
loop_
_chem_comp_angle.comp_id
_chem_comp_angle.atom_id_1
_chem_comp_angle.atom_id_2
_chem_comp_angle.atom_id_3
_chem_comp_angle.value_angle
_chem_comp_angle.value_angle_esd
 DT2      O3     S1     O2      109.500    3.000
 DT2      O3     S1     N6      109.500    3.000
 DT2      O3     S1     C16     109.500    3.000
 DT2      O2     S1     N6      109.500    3.000
 DT2      O2     S1     C16     109.500    3.000
 DT2      N6     S1     C16     109.500    3.000
 DT2      S1     N6     H6N2    120.000    3.000
 DT2      S1     N6     H6N1    120.000    3.000
 DT2      H6N2   N6     H6N1    120.000    3.000
 DT2      S1     C16    C17     120.000    3.000
 DT2      S1     C16    C15     120.000    3.000
 DT2      C17    C16    C15     120.000    3.000
 DT2      C16    C17    H17     120.000    3.000
 DT2      C16    C17    C18     120.000    3.000
 DT2      H17    C17    C18     120.000    3.000
 DT2      C17    C18    H18     120.000    3.000
 DT2      C17    C18    C13     120.000    3.000
 DT2      H18    C18    C13     120.000    3.000
 DT2      C18    C13    C14     120.000    3.000
 DT2      C18    C13    N5      120.000    3.000
 DT2      C14    C13    N5      120.000    3.000
 DT2      C13    C14    H14     120.000    3.000
 DT2      C13    C14    C15     120.000    3.000
 DT2      H14    C14    C15     120.000    3.000
 DT2      C14    C15    H15     120.000    3.000
 DT2      C14    C15    C16     120.000    3.000
 DT2      H15    C15    C16     120.000    3.000
 DT2      C13    N5     H5      120.000    3.000
 DT2      C13    N5     C9      120.000    3.000
 DT2      H5     N5     C9      120.000    3.000
 DT2      N5     C9     C8      120.000    3.000
 DT2      N5     C9     N2      120.000    3.000
 DT2      C8     C9     N2      120.000    3.000
 DT2      C9     C8     H8      120.000    3.000
 DT2      C9     C8     C7      120.000    3.000
 DT2      H8     C8     C7      120.000    3.000
 DT2      C8     C7     N1      120.000    3.000
 DT2      C8     C7     N7      120.000    3.000
 DT2      N1     C7     N7      120.000    3.000
 DT2      C7     N1     C10     120.000    3.000
 DT2      N1     C10    N4      120.000    3.000
 DT2      N1     C10    N2      120.000    3.000
 DT2      N4     C10    N2      108.000    3.000
 DT2      C10    N4     C11     108.000    3.000
 DT2      N4     C11    H11     126.000    3.000
 DT2      N4     C11    N3      108.000    3.000
 DT2      H11    C11    N3      126.000    3.000
 DT2      C11    N3     N2      108.000    3.000
 DT2      C10    N2     C9      120.000    3.000
 DT2      C10    N2     N3      120.000    3.000
 DT2      C9     N2     N3      120.000    3.000
 DT2      C7     N7     H7      120.000    3.000
 DT2      C7     N7     C1      120.000    3.000
 DT2      H7     N7     C1      118.500    3.000
 DT2      N7     C1     H1      108.550    3.000
 DT2      N7     C1     C6      110.000    3.000
 DT2      N7     C1     C2      110.000    3.000
 DT2      H1     C1     C6      108.340    3.000
 DT2      H1     C1     C2      108.340    3.000
 DT2      C6     C1     C2      109.470    3.000
 DT2      C1     C6     H6C1    109.470    3.000
 DT2      C1     C6     H6C2    109.470    3.000
 DT2      C1     C6     C5      111.000    3.000
 DT2      H6C1   C6     H6C2    107.900    3.000
 DT2      H6C1   C6     C5      109.470    3.000
 DT2      H6C2   C6     C5      109.470    3.000
 DT2      C6     C5     H5C1    109.470    3.000
 DT2      C6     C5     H5C2    109.470    3.000
 DT2      C6     C5     C4      111.000    3.000
 DT2      H5C1   C5     H5C2    107.900    3.000
 DT2      H5C1   C5     C4      109.470    3.000
 DT2      H5C2   C5     C4      109.470    3.000
 DT2      C5     C4     H4C1    109.470    3.000
 DT2      C5     C4     H4C2    109.470    3.000
 DT2      C5     C4     C3      111.000    3.000
 DT2      H4C1   C4     H4C2    107.900    3.000
 DT2      H4C1   C4     C3      109.470    3.000
 DT2      H4C2   C4     C3      109.470    3.000
 DT2      C4     C3     H3C1    109.470    3.000
 DT2      C4     C3     H3C2    109.470    3.000
 DT2      C4     C3     C2      111.000    3.000
 DT2      H3C1   C3     H3C2    107.900    3.000
 DT2      H3C1   C3     C2      109.470    3.000
 DT2      H3C2   C3     C2      109.470    3.000
 DT2      C3     C2     H2C2    109.470    3.000
 DT2      C3     C2     H2C1    109.470    3.000
 DT2      C3     C2     C1      111.000    3.000
 DT2      H2C2   C2     H2C1    107.900    3.000
 DT2      H2C2   C2     C1      109.470    3.000
 DT2      H2C1   C2     C1      109.470    3.000
loop_
_chem_comp_tor.comp_id
_chem_comp_tor.id
_chem_comp_tor.atom_id_1
_chem_comp_tor.atom_id_2
_chem_comp_tor.atom_id_3
_chem_comp_tor.atom_id_4
_chem_comp_tor.value_angle
_chem_comp_tor.value_angle_esd
_chem_comp_tor.period
 DT2      var_1    O3     S1     N6     H6N1    -112.587   20.000   1
 DT2      var_2    O3     S1     C16    C17       22.305   20.000   1
 DT2      CONST_1  S1     C16    C15    C14      180.000    0.000   0
 DT2      CONST_2  S1     C16    C17    C18      180.000    0.000   0
 DT2      CONST_3  C16    C17    C18    C13        0.000    0.000   0
 DT2      CONST_4  C17    C18    C13    N5       180.000    0.000   0
 DT2      CONST_5  C18    C13    C14    C15        0.000    0.000   0
 DT2      CONST_6  C13    C14    C15    C16        0.000    0.000   0
 DT2      var_3    C18    C13    N5     C9       173.020   20.000   1
 DT2      var_4    C13    N5     C9     C8       121.981   20.000   1
 DT2      CONST_7  N5     C9     N2     C10      180.000    0.000   0
 DT2      CONST_8  N5     C9     C8     C7       180.000    0.000   0
 DT2      CONST_9  C9     C8     C7     N7       180.000    0.000   0
 DT2      CONST_10 C8     C7     N1     C10        0.000    0.000   0
 DT2      CONST_11 C7     N1     C10    N2         0.000    0.000   0
 DT2      CONST_12 N1     C10    N4     C11      180.000    0.000   0
 DT2      CONST_13 C10    N4     C11    N3         0.000    0.000   0
 DT2      CONST_14 N4     C11    N3     N2         0.000    0.000   0
 DT2      CONST_15 N1     C10    N2     C9         0.000    0.000   0
 DT2      CONST_16 C10    N2     N3     C11        0.000    0.000   0
 DT2      var_5    C8     C7     N7     C1       179.999   20.000   1
 DT2      var_6    C7     N7     C1     C6       -84.990   20.000   3
 DT2      var_7    N7     C1     C2     C3       180.000   20.000   3
 DT2      var_8    N7     C1     C6     C5       180.000   20.000   3
 DT2      var_9    C1     C6     C5     C4        60.000   20.000   3
 DT2      var_10   C6     C5     C4     C3       -60.000   20.000   3
 DT2      var_11   C5     C4     C3     C2        60.000   20.000   3
 DT2      var_12   C4     C3     C2     C1       -60.000   20.000   3
loop_
_chem_comp_chir.comp_id
_chem_comp_chir.id
_chem_comp_chir.atom_id_centre
_chem_comp_chir.atom_id_1
_chem_comp_chir.atom_id_2
_chem_comp_chir.atom_id_3
_chem_comp_chir.volume_sign
 DT2      chir_01  S1     O2     O3     N6        negativ
 DT2      chir_02  C1     N7     C2     C6        negativ
loop_
_chem_comp_plane_atom.comp_id
_chem_comp_plane_atom.plane_id
_chem_comp_plane_atom.atom_id
_chem_comp_plane_atom.dist_esd
 DT2      plan-1    N6        0.020
 DT2      plan-1    S1        0.020
 DT2      plan-1    H6N1      0.020
 DT2      plan-1    H6N2      0.020
 DT2      plan-2    C16       0.020
 DT2      plan-2    S1        0.020
 DT2      plan-2    C15       0.020
 DT2      plan-2    C17       0.020
 DT2      plan-2    C14       0.020
 DT2      plan-2    C13       0.020
 DT2      plan-2    C18       0.020
 DT2      plan-2    H15       0.020
 DT2      plan-2    H14       0.020
 DT2      plan-2    N5        0.020
 DT2      plan-2    H18       0.020
 DT2      plan-2    H17       0.020
 DT2      plan-2    H5        0.020
 DT2      plan-3    N5        0.020
 DT2      plan-3    C13       0.020
 DT2      plan-3    C9        0.020
 DT2      plan-3    H5        0.020
 DT2      plan-4    C9        0.020
 DT2      plan-4    N5        0.020
 DT2      plan-4    N2        0.020
 DT2      plan-4    C8        0.020
 DT2      plan-4    N1        0.020
 DT2      plan-4    C7        0.020
 DT2      plan-4    N3        0.020
 DT2      plan-4    C10       0.020
 DT2      plan-4    C11       0.020
 DT2      plan-4    N4        0.020
 DT2      plan-4    H11       0.020
 DT2      plan-4    N7        0.020
 DT2      plan-4    H8        0.020
 DT2      plan-4    H5        0.020
 DT2      plan-4    H7        0.020
 DT2      plan-5    N7        0.020
 DT2      plan-5    C7        0.020
 DT2      plan-5    C1        0.020
 DT2      plan-5    H7        0.020
# ------------------------------------------------------